{"id":"https://openalex.org/W4417458297","doi":"https://doi.org/10.1093/bib/bbaf675","title":"scHLens: a web server for hierarchically and interactively exploring single cell RNA-seq data","display_name":"scHLens: a web server for hierarchically and interactively exploring single cell RNA-seq data","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4417458297","doi":"https://doi.org/10.1093/bib/bbaf675","pmid":"https://pubmed.ncbi.nlm.nih.gov/41403052"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf675","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf675","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079986783","display_name":"Jiazhi Xia","orcid":"https://orcid.org/0000-0003-4629-6268"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jiazhi Xia","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I48168531","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101529579","display_name":"Zhiwei Deng","orcid":"https://orcid.org/0000-0003-4536-293X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhiwei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I48168531","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100745885","display_name":"Chen He","orcid":"https://orcid.org/0000-0002-7810-5334"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Chen He","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I48168531","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I48168531","https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044328870","display_name":"Ruiqing Zheng","orcid":"https://orcid.org/0000-0001-6372-6798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Ruiqing Zheng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":"https://orcid.org/0000-0001-6372-6798","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I48168531","https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30485113,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7681999802589417},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6453999876976013},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5669999718666077},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5637999773025513},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5590000152587891},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.546500027179718},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5385000109672546},{"id":"https://openalex.org/keywords/forcing","display_name":"Forcing (mathematics)","score":0.4284000098705292},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.3553999960422516}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.821399986743927},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7681999802589417},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6453999876976013},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5669999718666077},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5637999773025513},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5590000152587891},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.546500027179718},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5385000109672546},{"id":"https://openalex.org/C197115733","wikidata":"https://www.wikidata.org/wiki/Q1003136","display_name":"Forcing (mathematics)","level":2,"score":0.4284000098705292},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.3553999960422516},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3547999858856201},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3481000065803528},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.34450000524520874},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.33480000495910645},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.33399999141693115},{"id":"https://openalex.org/C24733836","wikidata":"https://www.wikidata.org/wiki/Q649186","display_name":"Web mapping","level":4,"score":0.29919999837875366},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.2946999967098236},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.2924000024795532},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.28999999165534973},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.26510000228881836},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.257099986076355},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.2563000023365021},{"id":"https://openalex.org/C138744977","wikidata":"https://www.wikidata.org/wiki/Q5132438","display_name":"Clickstream","level":5,"score":0.25060001015663147}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf675","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41403052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41403052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12708058","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12708058/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf675","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2042553169","display_name":null,"funder_award_id":"62372471","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7748339813","display_name":null,"funder_award_id":"2023JJ40780","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G921486363","display_name":null,"funder_award_id":"U23A20313","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1129723573","https://openalex.org/W1504192843","https://openalex.org/W1982320535","https://openalex.org/W2027461913","https://openalex.org/W2069089843","https://openalex.org/W2070050178","https://openalex.org/W2111886083","https://openalex.org/W2130410032","https://openalex.org/W2131681506","https://openalex.org/W2150593711","https://openalex.org/W2345356016","https://openalex.org/W2526262591","https://openalex.org/W2598326928","https://openalex.org/W2786672974","https://openalex.org/W2800392236","https://openalex.org/W2894687190","https://openalex.org/W2895456557","https://openalex.org/W2897249806","https://openalex.org/W2911108160","https://openalex.org/W2912844538","https://openalex.org/W2951158909","https://openalex.org/W2951506174","https://openalex.org/W2972458663","https://openalex.org/W2992151131","https://openalex.org/W2997280954","https://openalex.org/W2998065416","https://openalex.org/W3007935255","https://openalex.org/W3110693579","https://openalex.org/W3132661792","https://openalex.org/W3145969289","https://openalex.org/W3157597116","https://openalex.org/W3186494727","https://openalex.org/W3194569097","https://openalex.org/W3195264720","https://openalex.org/W3196668182","https://openalex.org/W4206581595","https://openalex.org/W4224304058","https://openalex.org/W4225282388","https://openalex.org/W4225702304","https://openalex.org/W4233298626","https://openalex.org/W4252684946","https://openalex.org/W4304480073","https://openalex.org/W4311125341","https://openalex.org/W4380082653","https://openalex.org/W4385741869","https://openalex.org/W4385782508","https://openalex.org/W4385797716","https://openalex.org/W4386084242","https://openalex.org/W4389868415","https://openalex.org/W4390206253","https://openalex.org/W4391677297","https://openalex.org/W4392231446","https://openalex.org/W4393276283","https://openalex.org/W4404019762","https://openalex.org/W4407158035","https://openalex.org/W4414521027"],"related_works":[],"abstract_inverted_index":{"With":[0],"the":[1,8,30,78,134,142],"great":[2],"advancement":[3],"of":[4,10,80],"single-cell":[5],"transcriptome":[6],"technologies,":[7],"identification":[9],"cellular":[11,69,121],"heterogeneity":[12],"from":[13],"scRNA-seq":[14],"data":[15],"has":[16],"become":[17],"an":[18],"important":[19],"task":[20],"in":[21,58],"biomedical":[22],"research.":[23],"There":[24],"are":[25],"several":[26],"challenges":[27],"associated":[28],"with":[29],"existing":[31,51],"analysis":[32,99],"methods:":[33],"(i)":[34],"The":[35,112,123],"reliance":[36],"on":[37],"command-line":[38],"interfaces":[39],"creates":[40],"a":[41,87,97],"substantial":[42],"technical":[43],"barrier":[44],"for":[45],"researchers":[46],"lacking":[47],"computational":[48],"expertise;":[49],"(ii)":[50],"methods":[52],"or":[53],"platforms":[54],"usually":[55],"lack":[56],"flexibility":[57],"workflow":[59],"customization,":[60],"forcing":[61],"users":[62],"into":[63],"rigid":[64],"analytical":[65],"pipelines;":[66],"(iii)":[67],"hierarchical":[68,88,102],"subtypes":[70],"challenge":[71],"conventional":[72],"clustering,":[73],"as":[74],"fixed-resolution":[75],"analyses":[76],"prevent":[77],"detection":[79],"biologically":[81],"subtype":[82],"cells.":[83],"Here,":[84],"we":[85],"develop":[86],"and":[89,101,109,141],"interactive":[90],"web":[91,125],"server":[92,126],"named":[93],"scHLens.":[94],"scHLens":[95],"supports":[96],"user-defined":[98],"pipeline":[100],"exploration":[103],"mode,":[104],"providing":[105],"various":[106],"visualization":[107],"views":[108],"interaction":[110],"operations.":[111],"three":[113],"case":[114],"studies":[115],"demonstrate":[116],"scHLens's":[117],"ability":[118],"to":[119],"identify":[120],"heterogeneity.":[122],"online":[124],"version":[127,136],"is":[128,137],"freely":[129],"available":[130,138],"at":[131,139,148],"http://schlens.csuligroup.com,":[132],"while":[133],"Docker":[135],"https://hub.docker.com/r/zhiweideng975/schlens,":[140],"source":[143],"code":[144],"can":[145],"be":[146],"obtained":[147],"https://github.com/ZhiweiDeng459/scHLens.":[149]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-12-18T00:00:00"}
