{"id":"https://openalex.org/W4417416950","doi":"https://doi.org/10.1093/bib/bbaf670","title":"Decoupled dual-granularity rebalanced pyramid network for drug\u2013target interaction prediction","display_name":"Decoupled dual-granularity rebalanced pyramid network for drug\u2013target interaction prediction","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4417416950","doi":"https://doi.org/10.1093/bib/bbaf670","pmid":"https://pubmed.ncbi.nlm.nih.gov/41396811"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf670","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf670","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101195985","display_name":"Zhiyuan Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiyuan Dong","raw_affiliation_strings":["School of Computer and Artificial Intelligence , Zhengzhou University, No. 100 Science Avenue, Zhengzhou 450000,"],"affiliations":[{"raw_affiliation_string":"School of Computer and Artificial Intelligence , Zhengzhou University, No. 100 Science Avenue, Zhengzhou 450000,","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039905032","display_name":"Yijia Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,","institution_ids":["https://openalex.org/I4210100868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048879716","display_name":"Yang Shi","orcid":"https://orcid.org/0009-0004-8046-790X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Shi","raw_affiliation_strings":["Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460096","display_name":"Chao Zhang","orcid":"https://orcid.org/0000-0001-7894-8828"},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Zhang","raw_affiliation_strings":["The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,","institution_ids":["https://openalex.org/I4210100868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110132176","display_name":"Chaosheng Han","orcid":"https://orcid.org/0009-0000-9149-4525"},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaoyang Han","raw_affiliation_strings":["The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,","institution_ids":["https://openalex.org/I4210100868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100615431","display_name":"Hongfeng Li","orcid":"https://orcid.org/0000-0003-4589-3116"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfeng Li","raw_affiliation_strings":["Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002307743","display_name":"Yajuan Gao","orcid":"https://orcid.org/0009-0008-2149-5387"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210141942","display_name":"Peking University Third Hospital","ror":"https://ror.org/04wwqze12","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajuan Gao","raw_affiliation_strings":["Beijing Key Laboratory of Magnetic Resonance lmaging Devices and Technology , Peking University Third Hospital, No. 49 Huayuan North Road, Haidian District, Beijing 100191,","Department of Radiology , Peking University Third Hospital, No. 49 Huayuan North Road, Haidian District, Beijing 100191,"],"affiliations":[{"raw_affiliation_string":"Beijing Key Laboratory of Magnetic Resonance lmaging Devices and Technology , Peking University Third Hospital, No. 49 Huayuan North Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210141942"]},{"raw_affiliation_string":"Department of Radiology , Peking University Third Hospital, No. 49 Huayuan North Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210141942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089969284","display_name":"Wanyi Fu","orcid":"https://orcid.org/0000-0002-9851-1970"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanyi Fu","raw_affiliation_strings":["Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082320568","display_name":"Yanye Lu","orcid":"https://orcid.org/0000-0002-3063-8051"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanye Lu","raw_affiliation_strings":["Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Technology , Peking University Health Science Center, No. 38 Xueyuan Road, Haidian District, Beijing 100191,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715175","display_name":"Ping Ren","orcid":"https://orcid.org/0000-0002-7163-9958"},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Ren","raw_affiliation_strings":["The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,","institution_ids":["https://openalex.org/I4210100868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104260652","display_name":"Lei Liang","orcid":"https://orcid.org/0009-0004-2636-3659"},"institutions":[{"id":"https://openalex.org/I4210161752","display_name":"Beijing Haidian Hospital","ror":"https://ror.org/058x5eq06","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210161752"]},{"id":"https://openalex.org/I4210110108","display_name":"Aerospace Center Hospital","ror":"https://ror.org/01yb3sb52","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210110108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Liang","raw_affiliation_strings":["Peking University and Director of the Ultrasound Department , Aerospace Center Hospital, No. 15 Yuquan Road, Haidian District, Beijing 100049,"],"affiliations":[{"raw_affiliation_string":"Peking University and Director of the Ultrasound Department , Aerospace Center Hospital, No. 15 Yuquan Road, Haidian District, Beijing 100049,","institution_ids":["https://openalex.org/I4210161752","https://openalex.org/I4210110108"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100400421","display_name":"Zhiyu Liu","orcid":"https://orcid.org/0000-0002-7918-9971"},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyu Liu","raw_affiliation_strings":["The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,"],"affiliations":[{"raw_affiliation_string":"The Second Affiliated Hospital of Dalian Medical University , 467 Zhongshan Road, Shahekou District, Dalian 116023,","institution_ids":["https://openalex.org/I4210100868"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5101195985"],"corresponding_institution_ids":["https://openalex.org/I38877650"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.40118085,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.925000011920929,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.925000011920929,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.016499999910593033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.013700000010430813,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.736299991607666},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6894999742507935},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.6759999990463257},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6632000207901001},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6618000268936157},{"id":"https://openalex.org/keywords/pyramid","display_name":"Pyramid (geometry)","score":0.6029000282287598},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5893999934196472},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5673999786376953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7944999933242798},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.736299991607666},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6894999742507935},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.6759999990463257},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6632000207901001},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6618000268936157},{"id":"https://openalex.org/C142575187","wikidata":"https://www.wikidata.org/wiki/Q3358290","display_name":"Pyramid (geometry)","level":2,"score":0.6029000282287598},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5993000268936157},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5893999934196472},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5673999786376953},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.4876999855041504},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4625999927520752},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4169999957084656},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.35420000553131104},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.31349998712539673},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.30660000443458557},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.3057999908924103},{"id":"https://openalex.org/C2778971668","wikidata":"https://www.wikidata.org/wiki/Q5510284","display_name":"Fusion rules","level":4,"score":0.27090001106262207},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.2676999866962433},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.260699987411499}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf670","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41396811","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41396811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12704439","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12704439/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12704439/pdf/bbaf670.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf670","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3182591502","display_name":null,"funder_award_id":"62371423","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W2035585923","https://openalex.org/W2086286404","https://openalex.org/W2119821739","https://openalex.org/W2121175754","https://openalex.org/W2166550586","https://openalex.org/W2168480393","https://openalex.org/W2255466643","https://openalex.org/W2767891136","https://openalex.org/W2860192827","https://openalex.org/W2898391595","https://openalex.org/W2899788782","https://openalex.org/W3000043291","https://openalex.org/W3018980093","https://openalex.org/W3029836473","https://openalex.org/W3096561213","https://openalex.org/W3115142961","https://openalex.org/W3177828909","https://openalex.org/W3206585172","https://openalex.org/W4205510792","https://openalex.org/W4283010692","https://openalex.org/W4297733535","https://openalex.org/W4310457446","https://openalex.org/W4318981550","https://openalex.org/W4323653718","https://openalex.org/W4390621089","https://openalex.org/W4394853685","https://openalex.org/W4400060970","https://openalex.org/W4401757149","https://openalex.org/W4406279606","https://openalex.org/W4406885099","https://openalex.org/W4408304439","https://openalex.org/W4408557607","https://openalex.org/W4409364444","https://openalex.org/W4412131028"],"related_works":[],"abstract_inverted_index":{"Drug-target":[0],"interaction":[1],"(DTI)":[2],"prediction":[3,167],"is":[4,57,109],"a":[5,66,144],"critical":[6],"task":[7,76],"in":[8,14,23,140,165],"drug":[9],"discovery.":[10],"However,":[11],"the":[12,29,41,74,94,99,105,134,137,149],"differences":[13],"size":[15],"between":[16],"drugs":[17],"and":[18,65,93,169,176],"proteins":[19],"present":[20],"significant":[21],"challenges":[22],"accurately":[24],"predicting":[25],"binding":[26,124],"sites.":[27,125],"Additionally,":[28],"issue":[30],"of":[31,43,80,123],"modality":[32,37,139,154],"imbalance,":[33],"which":[34,56,85,131],"arises":[35],"from":[36],"learning":[38],"biases,":[39],"undermines":[40],"contribution":[42],"multimodal":[44,141],"representations":[45],"to":[46,111],"DTI":[47,75],"prediction.":[48],"To":[49],"address":[50],"these":[51],"challenges,":[52],"we":[53,127],"propose":[54],"DDGR-DTI,":[55],"based":[58,90],"on":[59,91],"an":[60,129],"innovative":[61],"Decoupled":[62],"Dual-Granularity":[63],"Framework":[64],"Rebalanced":[67],"pyramid":[68],"network":[69],"(RPN).":[70],"This":[71],"framework":[72],"divides":[73],"into":[77,88],"two":[78],"levels":[79],"granularity.":[81],"The":[82,173],"macro":[83],"level,":[84],"decomposes":[86,98],"it":[87],"subtasks":[89],"modality,":[92],"micro":[95],"level":[96],"further":[97],"representation":[100],"within":[101,116],"each":[102,117],"subtask.":[103],"Furthermore,":[104],"dual-stream":[106],"attention":[107],"module":[108],"utilized":[110],"perform":[112],"fine-grained":[113],"substructure-level":[114],"interactions":[115],"subtask,":[118],"thereby":[119],"enabling":[120],"accurate":[121],"identification":[122],"Simultaneously,":[126],"employ":[128],"RPN,":[130],"effectively":[132],"alleviates":[133],"bias":[135],"towards":[136],"dominant":[138],"fusion":[142],"through":[143],"hierarchical":[145],"aggregation":[146],"mechanism,":[147],"emphasizing":[148],"synergistic":[150],"advantages":[151],"brought":[152],"by":[153],"balance.":[155],"Benchmark":[156],"results":[157],"demonstrate":[158],"that":[159],"DDGR-DTI":[160],"outperforms":[161],"existing":[162],"state-of-the-art":[163],"models":[164],"both":[166],"performance":[168],"generalization":[170],"ability.":[171],"Availability:":[172],"source":[174],"code":[175],"dataset":[177],"can":[178],"be":[179],"found":[180],"at":[181],"https://github.com/ZZUzy/DDGR-DTI.":[182]},"counts_by_year":[],"updated_date":"2026-03-22T08:09:32.410652","created_date":"2025-12-16T00:00:00"}
