{"id":"https://openalex.org/W4416137592","doi":"https://doi.org/10.1093/bib/bbaf601","title":"The rise and potential opportunities of large language model agents in bioinformatics and biomedicine","display_name":"The rise and potential opportunities of large language model agents in bioinformatics and biomedicine","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4416137592","doi":"https://doi.org/10.1093/bib/bbaf601","pmid":"https://pubmed.ncbi.nlm.nih.gov/41214870"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf601","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf601","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Tiantian Yang","orcid":"https://orcid.org/0009-0000-0499-336X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tiantian Yang","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China"],"raw_orcid":"https://orcid.org/0009-0000-0499-336X","affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085358727","display_name":"Yihang Xiao","orcid":"https://orcid.org/0009-0007-8624-4856"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yihang Xiao","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037309581","display_name":"Zhijie Bao","orcid":"https://orcid.org/0000-0002-6261-7706"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhijie Bao","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","School of Data Science, Fudan University , No. 220 Handan Road, Shanghai, 200433 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China","School of Data Science, Fudan University, No. 220 Handan Road, Shanghai, 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"School of Data Science, Fudan University , No. 220 Handan Road, Shanghai, 200433 ,","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Data Science, Fudan University, No. 220 Handan Road, Shanghai, 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047509839","display_name":"Jianye Hao","orcid":"https://orcid.org/0000-0002-0422-8235"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianye Hao","raw_affiliation_strings":["School of Intelligence and Computing, Tianjin University , No. 92 Weijin Road, Tianjin, 300072 ,","School of Intelligence and Computing, Tianjin University, No. 92 Weijin Road, Tianjin, 300072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligence and Computing, Tianjin University , No. 92 Weijin Road, Tianjin, 300072 ,","institution_ids":["https://openalex.org/I162868743"]},{"raw_affiliation_string":"School of Intelligence and Computing, Tianjin University, No. 92 Weijin Road, Tianjin, 300072, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086535409","display_name":"Jiajie Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology, No. 1 Dongxiang Road, Xi'an, 710129, China","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , No. 1 Dongxiang Road, Xi\u2019an, 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology, No. 1 Dongxiang Road, Xi'an, 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an, 710129, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.9862,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.92036331,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.6694999933242798,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.6694999933242798,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.027799999341368675,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.025699999183416367,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.8461999893188477},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5357000231742859},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.49729999899864197},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.3154999911785126},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.2985000014305115},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.2921000123023987}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.8461999893188477},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5940999984741211},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5357000231742859},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.49729999899864197},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4690999984741211},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.392300009727478},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3806999921798706},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.3154999911785126},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.3151000142097473},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.2985000014305115},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.2921000123023987},{"id":"https://openalex.org/C2779017730","wikidata":"https://www.wikidata.org/wiki/Q5145845","display_name":"Collaborative model","level":2,"score":0.271699994802475},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.26170000433921814},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.25949999690055847}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf601","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41214870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41214870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11410644","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12602188","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf601","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4789861363","display_name":null,"funder_award_id":"92370106","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G535927982","display_name":null,"funder_award_id":"62072376","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":170,"referenced_works":["https://openalex.org/W1984174202","https://openalex.org/W2009313526","https://openalex.org/W2152208870","https://openalex.org/W2522882154","https://openalex.org/W2528448779","https://openalex.org/W2751968371","https://openalex.org/W2885079199","https://openalex.org/W2903777941","https://openalex.org/W2910436338","https://openalex.org/W2911489562","https://openalex.org/W2963341956","https://openalex.org/W2982551402","https://openalex.org/W2990072080","https://openalex.org/W3009086013","https://openalex.org/W3034999214","https://openalex.org/W3038607030","https://openalex.org/W3042021489","https://openalex.org/W3100788068","https://openalex.org/W3128912454","https://openalex.org/W3161958962","https://openalex.org/W3169483174","https://openalex.org/W3177828909","https://openalex.org/W3184778096","https://openalex.org/W3196974791","https://openalex.org/W3197328310","https://openalex.org/W3209059054","https://openalex.org/W4205537147","https://openalex.org/W4210656949","https://openalex.org/W4214810114","https://openalex.org/W4224308101","https://openalex.org/W4224983028","https://openalex.org/W4252672146","https://openalex.org/W4283783607","https://openalex.org/W4285110821","https://openalex.org/W4287083393","https://openalex.org/W4294243134","https://openalex.org/W4294837428","https://openalex.org/W4297253404","https://openalex.org/W4306801963","https://openalex.org/W4309088836","https://openalex.org/W4322718191","https://openalex.org/W4327810158","https://openalex.org/W4327810286","https://openalex.org/W4362515116","https://openalex.org/W4375858802","https://openalex.org/W4378942171","https://openalex.org/W4382394524","https://openalex.org/W4382653968","https://openalex.org/W4384129427","https://openalex.org/W4384561707","https://openalex.org/W4384918448","https://openalex.org/W4386555477","https://openalex.org/W4386794445","https://openalex.org/W4386942462","https://openalex.org/W4387356327","https://openalex.org/W4387835442","https://openalex.org/W4388155974","https://openalex.org/W4388584897","https://openalex.org/W4388843580","https://openalex.org/W4388890651","https://openalex.org/W4389109729","https://openalex.org/W4389741632","https://openalex.org/W4389775637","https://openalex.org/W4389917881","https://openalex.org/W4390754450","https://openalex.org/W4391272008","https://openalex.org/W4391591599","https://openalex.org/W4391766565","https://openalex.org/W4391871157","https://openalex.org/W4392193191","https://openalex.org/W4392240262","https://openalex.org/W4392449489","https://openalex.org/W4392871613","https://openalex.org/W4393065402","https://openalex.org/W4393147158","https://openalex.org/W4395026179","https://openalex.org/W4395065873","https://openalex.org/W4396622252","https://openalex.org/W4396723768","https://openalex.org/W4396822552","https://openalex.org/W4396882099","https://openalex.org/W4396914123","https://openalex.org/W4397004462","https://openalex.org/W4398203645","https://openalex.org/W4399029231","https://openalex.org/W4399401168","https://openalex.org/W4399986584","https://openalex.org/W4399991282","https://openalex.org/W4400324908","https://openalex.org/W4400600526","https://openalex.org/W4400971703","https://openalex.org/W4401201158","https://openalex.org/W4401386758","https://openalex.org/W4401390644","https://openalex.org/W4401506519","https://openalex.org/W4401650501","https://openalex.org/W4401820448","https://openalex.org/W4402170669","https://openalex.org/W4402626956","https://openalex.org/W4402671648","https://openalex.org/W4402671652","https://openalex.org/W4402671772","https://openalex.org/W4402672057","https://openalex.org/W4403071119","https://openalex.org/W4403075667","https://openalex.org/W4403099947","https://openalex.org/W4403160590","https://openalex.org/W4403322813","https://openalex.org/W4403324134","https://openalex.org/W4403346066","https://openalex.org/W4403571374","https://openalex.org/W4403575774","https://openalex.org/W4403704348","https://openalex.org/W4403757785","https://openalex.org/W4403786786","https://openalex.org/W4403851311","https://openalex.org/W4403925918","https://openalex.org/W4404088737","https://openalex.org/W4404518047","https://openalex.org/W4404594861","https://openalex.org/W4404641323","https://openalex.org/W4404781082","https://openalex.org/W4404781813","https://openalex.org/W4404876948","https://openalex.org/W4404914624","https://openalex.org/W4404917813","https://openalex.org/W4405180888","https://openalex.org/W4405427526","https://openalex.org/W4405483747","https://openalex.org/W4405562084","https://openalex.org/W4405576517","https://openalex.org/W4406152279","https://openalex.org/W4406259721","https://openalex.org/W4406316552","https://openalex.org/W4406449971","https://openalex.org/W4406542750","https://openalex.org/W4406633314","https://openalex.org/W4406706905","https://openalex.org/W4406833248","https://openalex.org/W4406855514","https://openalex.org/W4407691270","https://openalex.org/W4407759090","https://openalex.org/W4407837005","https://openalex.org/W4407858065","https://openalex.org/W4408192027","https://openalex.org/W4409481553","https://openalex.org/W4409657397","https://openalex.org/W4410706618","https://openalex.org/W4411005431","https://openalex.org/W4411403346","https://openalex.org/W4412143524","https://openalex.org/W4412203333","https://openalex.org/W4412635660","https://openalex.org/W4412692453","https://openalex.org/W4412709685","https://openalex.org/W4412722243","https://openalex.org/W4412825760","https://openalex.org/W4412888620","https://openalex.org/W4413108750","https://openalex.org/W4414484806","https://openalex.org/W4415020794","https://openalex.org/W6891742716","https://openalex.org/W6891838526","https://openalex.org/W6891904667","https://openalex.org/W6891925823","https://openalex.org/W6892070074","https://openalex.org/W6910806095","https://openalex.org/W6910824972","https://openalex.org/W6929704151","https://openalex.org/W6966857919"],"related_works":[],"abstract_inverted_index":{"Large":[0],"language":[1],"model":[2,76],"(LLM)":[3],"agents":[4,40,123],"have":[5],"demonstrated":[6],"remarkable":[7],"potential":[8],"in":[9,41,124],"the":[10,19,36,56,65,101,119],"fields":[11],"of":[12,22,38,69,81,103,121],"bioinformatics":[13,125],"and":[14,31,49,67,74,78,84,86,100,106,116,126],"biomedicine.":[15,127],"This":[16,108],"paper":[17,53,109],"reviews":[18],"technical":[20],"foundations":[21],"LLM":[23,39,61,122],"agents,":[24,62],"including":[25,94],"their":[26,70],"core":[27],"architecture,":[28],"key":[29],"technologies,":[30],"collaborative":[32],"modes.":[33],"We":[34],"explore":[35],"applications":[37],"multi-omics,":[42],"drug":[43],"development,":[44],"chemical":[45],"research,":[46],"clinical":[47],"diagnosis,":[48],"health":[50],"management.":[51],"The":[52],"also":[54],"analyzes":[55],"major":[57],"challenges":[58],"faced":[59],"by":[60],"such":[63],"as":[64],"interaction":[66],"extension":[68],"frameworks,":[71],"data":[72],"privacy":[73],"security,":[75],"hallucinations":[77],"interpretability,":[79],"timeliness":[80],"knowledge":[82],"updates,":[83],"ethical":[85],"legal":[87],"risks.":[88],"Furthermore,":[89],"we":[90],"discuss":[91],"future":[92],"directions,":[93],"paradigms":[95],"for":[96],"human-artificial":[97],"intelligence":[98],"collaboration":[99],"development":[102],"open-source":[104],"ecosystems":[105],"standardization.":[107],"aims":[110],"to":[111],"provide":[112],"a":[113],"comprehensive":[114],"perspective":[115],"guidance":[117],"on":[118],"advancement":[120]},"counts_by_year":[{"year":2026,"cited_by_count":9}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-11-11T00:00:00"}
