{"id":"https://openalex.org/W4416088425","doi":"https://doi.org/10.1093/bib/bbaf596","title":"Decoding cancer heterogeneity through super-enhancer landscapes: from subtype discovery to therapeutic opportunity","display_name":"Decoding cancer heterogeneity through super-enhancer landscapes: from subtype discovery to therapeutic opportunity","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4416088425","doi":"https://doi.org/10.1093/bib/bbaf596","pmid":"https://pubmed.ncbi.nlm.nih.gov/41212594"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf596","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf596/65259447/bbaf596.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf596/65259447/bbaf596.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028020051","display_name":"Shuyang Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":false,"raw_author_name":"Shuyang Cai","raw_affiliation_strings":["State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077913648","display_name":"Zhenchang Wang","orcid":"https://orcid.org/0000-0001-8190-6469"},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":false,"raw_author_name":"Zhenchang Wang","raw_affiliation_strings":["State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082259816","display_name":"Xiao Sun","orcid":"https://orcid.org/0000-0003-1048-7775"},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":false,"raw_author_name":"Xiao Sun","raw_affiliation_strings":["State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China"],"raw_orcid":"https://orcid.org/0000-0003-1048-7775","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006597349","display_name":"Hao Huang","orcid":"https://orcid.org/0000-0002-5570-6145"},"institutions":[{"id":"https://openalex.org/I4210090971","display_name":"Southeast University","ror":"https://ror.org/00cf0ab87","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210090971"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["BD","CN"],"is_corresponding":true,"raw_author_name":"Hao Huang","raw_affiliation_strings":["State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China"],"raw_orcid":"https://orcid.org/0000-0002-5570-6145","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University , No. 2 SEU Road, Nanjing, Jiangsu 211189 ,","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]},{"raw_affiliation_string":"State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, No. 2 SEU Road, Nanjing, Jiangsu 211189, China","institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006597349"],"corresponding_institution_ids":["https://openalex.org/I4210090971","https://openalex.org/I76569877"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.4074,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64185153,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.37450000643730164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.37450000643730164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1412999927997589,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.10719999670982361,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.6585000157356262},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6506999731063843},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5169000029563904},{"id":"https://openalex.org/keywords/epigenesis","display_name":"Epigenesis","score":0.48590001463890076},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4611999988555908},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.39430001378059387},{"id":"https://openalex.org/keywords/tumour-heterogeneity","display_name":"Tumour heterogeneity","score":0.3874000012874603}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.6585000157356262},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6506999731063843},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5975000262260437},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5169000029563904},{"id":"https://openalex.org/C179463898","wikidata":"https://www.wikidata.org/wiki/Q10273301","display_name":"Epigenesis","level":5,"score":0.48590001463890076},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4611999988555908},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39980000257492065},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.39430001378059387},{"id":"https://openalex.org/C2777306565","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumour heterogeneity","level":3,"score":0.3874000012874603},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.38519999384880066},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3781999945640564},{"id":"https://openalex.org/C64618202","wikidata":"https://www.wikidata.org/wiki/Q3733697","display_name":"Genetic heterogeneity","level":4,"score":0.33480000495910645},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3334999978542328},{"id":"https://openalex.org/C2778355321","wikidata":"https://www.wikidata.org/wiki/Q17079427","display_name":"Identity (music)","level":2,"score":0.3224000036716461},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.3158999979496002},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30869999527931213},{"id":"https://openalex.org/C3018028425","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumor heterogeneity","level":3,"score":0.28679999709129333},{"id":"https://openalex.org/C2781089630","wikidata":"https://www.wikidata.org/wiki/Q21856745","display_name":"Realization (probability)","level":2,"score":0.26649999618530273}],"mesh":[{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018740","descriptor_name":"Genetic Heterogeneity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018740","descriptor_name":"Genetic Heterogeneity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf596","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf596/65259447/bbaf596.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41212594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41212594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11409609","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12599312","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12599312/pdf/bbaf596.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf596","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf596/65259447/bbaf596.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1289673286","display_name":null,"funder_award_id":"BK20220823","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G1344631100","display_name":null,"funder_award_id":"2242023R40017","funder_id":"https://openalex.org/F4320324856","funder_display_name":"Southeast University"},{"id":"https://openalex.org/G1403535049","display_name":null,"funder_award_id":"2242023 K5005","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G1540064695","display_name":null,"funder_award_id":"62202098","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1679022308","display_name":null,"funder_award_id":"2242023R40017","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2733733853","display_name":null,"funder_award_id":"RF1028623140","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G3266067444","display_name":null,"funder_award_id":"RF1028623140","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3364274508","display_name":null,"funder_award_id":"RF1028623140","funder_id":"https://openalex.org/F4320324856","funder_display_name":"Southeast University"},{"id":"https://openalex.org/G3375692960","display_name":null,"funder_award_id":"62202098","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G3418634161","display_name":null,"funder_award_id":"2242023R40017","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4284951055","display_name":null,"funder_award_id":"BK20220823","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G437392617","display_name":null,"funder_award_id":"62202098","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4387651648","display_name":null,"funder_award_id":"2242023R40017","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G4422306722","display_name":null,"funder_award_id":"BK20220823","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G4465689842","display_name":null,"funder_award_id":"2242023","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5933580214","display_name":null,"funder_award_id":"RF1028623140","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324856","display_name":"Southeast University","ror":"https://ror.org/04ct4d772"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416088425.pdf","grobid_xml":"https://content.openalex.org/works/W4416088425.grobid-xml"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W1642951258","https://openalex.org/W1965057731","https://openalex.org/W1969466735","https://openalex.org/W1971578941","https://openalex.org/W1989043599","https://openalex.org/W2002395443","https://openalex.org/W2002850151","https://openalex.org/W2004966039","https://openalex.org/W2012983319","https://openalex.org/W2014677321","https://openalex.org/W2060484997","https://openalex.org/W2061555550","https://openalex.org/W2082414039","https://openalex.org/W2091548199","https://openalex.org/W2114104545","https://openalex.org/W2120572492","https://openalex.org/W2128151873","https://openalex.org/W2146512944","https://openalex.org/W2147944526","https://openalex.org/W2157164705","https://openalex.org/W2170846478","https://openalex.org/W2171808845","https://openalex.org/W2176574121","https://openalex.org/W2179438025","https://openalex.org/W2269026928","https://openalex.org/W2524890297","https://openalex.org/W2587699608","https://openalex.org/W2607363971","https://openalex.org/W2738259427","https://openalex.org/W2738563754","https://openalex.org/W2786732053","https://openalex.org/W2791004579","https://openalex.org/W2892397277","https://openalex.org/W2919981059","https://openalex.org/W2921841818","https://openalex.org/W2931202164","https://openalex.org/W2979624544","https://openalex.org/W2983759518","https://openalex.org/W2989837622","https://openalex.org/W2997016650","https://openalex.org/W2999161782","https://openalex.org/W3000068022","https://openalex.org/W3037646282","https://openalex.org/W3038229939","https://openalex.org/W3089276031","https://openalex.org/W3091019271","https://openalex.org/W3092177456","https://openalex.org/W3097471811","https://openalex.org/W3112137768","https://openalex.org/W3156830838","https://openalex.org/W3159317682","https://openalex.org/W3183894367","https://openalex.org/W3200079988","https://openalex.org/W3200887597","https://openalex.org/W3207774560","https://openalex.org/W3208331474","https://openalex.org/W4213151014","https://openalex.org/W4283828391","https://openalex.org/W4284879625","https://openalex.org/W4294675785","https://openalex.org/W4306404480","https://openalex.org/W4307845770","https://openalex.org/W4319317220","https://openalex.org/W4353016739","https://openalex.org/W4377142576","https://openalex.org/W4380265755","https://openalex.org/W4383368959","https://openalex.org/W4385198661","https://openalex.org/W4386624620","https://openalex.org/W4387114589","https://openalex.org/W4387811387","https://openalex.org/W4387966116","https://openalex.org/W4389243306","https://openalex.org/W4390108630","https://openalex.org/W4402145669","https://openalex.org/W4404356559","https://openalex.org/W4406780952","https://openalex.org/W4408275933","https://openalex.org/W4409605658","https://openalex.org/W4410332174","https://openalex.org/W4410809588","https://openalex.org/W4415550890"],"related_works":[],"abstract_inverted_index":{"Super-enhancers":[0],"(SEs)":[1],"are":[2],"clusters":[3],"of":[4,23,40,86,125],"enhancers":[5],"with":[6],"potent":[7],"regulatory":[8],"capabilities.":[9],"They":[10],"play":[11],"a":[12,107],"crucial":[13],"role":[14],"in":[15,62,76],"shaping":[16],"cellular":[17],"identity":[18],"and":[19,36,48,79,83,96,120],"driving":[20],"the":[21,59,71,81,92,123],"progression":[22],"various":[24],"diseases,":[25],"including":[26],"cancer.":[27],"SEs":[28],"exhibit":[29],"significant":[30],"heterogeneity":[31],"across":[32],"different":[33],"cell":[34],"types":[35],"cancer":[37,63,112],"subtypes.":[38,53,88],"Analysis":[39],"SE":[41,104],"landscapes":[42],"can":[43],"recapitulate":[44],"existing":[45],"classification":[46],"systems":[47],"unveil":[49],"novel":[50,117],"SE-driven":[51,87],"epigenetic":[52,118],"In":[54],"this":[55],"review,":[56],"we":[57,90],"summarized":[58],"latest":[60],"advancements":[61],"subtype":[64],"identification":[65],"based":[66],"on":[67],"SE-related":[68],"characteristics,":[69],"outlined":[70],"typical":[72],"analytical":[73],"workflows":[74],"adopted":[75],"such":[77],"studies,":[78],"explored":[80],"biological":[82],"clinical":[84],"significance":[85],"Furthermore,":[89],"discussed":[91],"field's":[93],"key":[94],"challenges":[95],"emerging":[97],"technologies":[98],"to":[99],"highlight":[100],"future":[101],"research":[102],"directions.":[103],"analysis":[105],"provides":[106],"robust":[108],"framework":[109],"for":[110,122],"dissecting":[111],"heterogeneity.":[113],"This":[114],"approach":[115],"offers":[116],"perspectives":[119],"support":[121],"realization":[124],"personalized":[126],"medicine.":[127]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-11-10T00:00:00"}
