{"id":"https://openalex.org/W4416205387","doi":"https://doi.org/10.1093/bib/bbaf581","title":"Decoding heart failure subtypes with neural networks via differential explanation analysis","display_name":"Decoding heart failure subtypes with neural networks via differential explanation analysis","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4416205387","doi":"https://doi.org/10.1093/bib/bbaf581","pmid":"https://pubmed.ncbi.nlm.nih.gov/41222558"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf581","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf581/65275879/bbaf581.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf581/65275879/bbaf581.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079558004","display_name":"Mariano Ruz Jurado","orcid":"https://orcid.org/0000-0001-5354-5336"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mariano Ruz Jurado","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5354-5336","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","institution_ids":["https://openalex.org/I4210127591"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074460283","display_name":"David Rodr\u00edguez Morales","orcid":"https://orcid.org/0000-0002-1819-6991"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Rodriguez Morales","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1819-6991","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078014518","display_name":"Elijah Genetzakis","orcid":"https://orcid.org/0009-0009-4381-7268"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"Elijah Genetzakis","raw_affiliation_strings":["Faculty of Medicine and Health, University of Sydney , Camperdown, NSW 2050 ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","Faculty of Medicine and Health, University of Sydney, Camperdown, NSW 2050, Australia"],"raw_orcid":"https://orcid.org/0009-0009-4381-7268","affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health, University of Sydney , Camperdown, NSW 2050 ,","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Faculty of Medicine and Health, University of Sydney, Camperdown, NSW 2050, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089837706","display_name":"Fatemeh Behjati Ardakani","orcid":"https://orcid.org/0000-0002-0185-3932"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fatemeh Behjati Ardakani","raw_affiliation_strings":["Institute for Computational Genomic Medicine, Goethe University Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0185-3932","affiliations":[{"raw_affiliation_string":"Institute for Computational Genomic Medicine, Goethe University Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062995958","display_name":"Lukas Zanders","orcid":"https://orcid.org/0000-0003-0488-6243"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210132578","display_name":"University Hospital Frankfurt","ror":"https://ror.org/03f6n9m15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210132578"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lukas Zanders","raw_affiliation_strings":["Clinic for Cardiology, University Hospital Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany","German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0488-6243","affiliations":[{"raw_affiliation_string":"Clinic for Cardiology, University Hospital Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438","https://openalex.org/I4210132578"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","institution_ids":["https://openalex.org/I4210127591"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054356851","display_name":"Ariane Fischer","orcid":null},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ariane Fischer","raw_affiliation_strings":["Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021809355","display_name":"Florian Buettner","orcid":"https://orcid.org/0000-0001-5587-6761"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210161239","display_name":"Frankfurt Cancer Institute","ror":"https://ror.org/05bx21r34","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210161239"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Buettner","raw_affiliation_strings":["German Cancer Consortium (DKTK), Goethe University Hospital , Frankfurt am Main 60590, Hessen ,","German Cancer Research Center (DKFZ) , Heidelberg 69120, Baden-W\u00fcrttemberg ,","German Cancer Consortium (DKTK), Goethe University Hospital, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5587-6761","affiliations":[{"raw_affiliation_string":"German Cancer Consortium (DKTK), Goethe University Hospital , Frankfurt am Main 60590, Hessen ,","institution_ids":["https://openalex.org/I114090438","https://openalex.org/I4210161239"]},{"raw_affiliation_string":"German Cancer Research Center (DKFZ) , Heidelberg 69120, Baden-W\u00fcrttemberg ,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK), Goethe University Hospital, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438","https://openalex.org/I4210161239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080725960","display_name":"Marcel H. Schulz","orcid":"https://orcid.org/0000-0002-1252-3656"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcel H Schulz","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG ), Hessen ,","German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","Institute for Computational Genomic Medicine, Goethe University Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen ,","Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","Institute for Computational Genomic Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1252-3656","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG ), Hessen ,","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute for Computational Genomic Medicine, Goethe University Frankfurt , Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen ,","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute for Computational Genomic Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025706940","display_name":"Stefanie Dimmeler","orcid":"https://orcid.org/0000-0002-1045-2436"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefanie Dimmeler","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1045-2436","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK) , Theodor-Stern-Kai 7, Frankfurt am Main 60590 ,","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Theodor-Stern-Kai 7, Frankfurt am Main 60590, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005270356","display_name":"David John","orcid":"https://orcid.org/0000-0003-3217-5449"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"David John","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3217-5449","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG) , Hessen ,","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt , Frankfurt am Main 60590, Hessen ,","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), funded by the German Research Foundation (DFG), Hessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"Institute of Cardiovascular Regeneration, Theodor-Stern-Kai 7, Goethe University Frankfurt, Frankfurt am Main 60590, Hessen, Germany","institution_ids":["https://openalex.org/I114090438"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5005270356"],"corresponding_institution_ids":["https://openalex.org/I114090438","https://openalex.org/I4210154233"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":0.3866,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63599726,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9122999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9122999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11962","display_name":"Cardiac Fibrosis and Remodeling","score":0.016499999910593033,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.010700000450015068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5583999752998352},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.490200012922287},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4869000017642975},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.44020000100135803},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.4189000129699707},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.3880000114440918}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5637999773025513},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5583999752998352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5576000213623047},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.490200012922287},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4869000017642975},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.44020000100135803},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4339999854564667},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42410001158714294},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.4189000129699707},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.3880000114440918},{"id":"https://openalex.org/C2778198053","wikidata":"https://www.wikidata.org/wiki/Q181754","display_name":"Heart failure","level":2,"score":0.3635999858379364},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.34779998660087585},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.34299999475479126},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3140000104904175},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.26809999346733093},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.26190000772476196}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006333","descriptor_name":"Heart Failure","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf581","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf581/65275879/bbaf581.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41222558","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41222558","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:11415215","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12610404","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12610404/pdf/bbaf581.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf581","pdf_url":"https://academic.oup.com/bib/article-pdf/26/6/bbaf581/65275879/bbaf581.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6533397490","display_name":null,"funder_award_id":"81X3200119","funder_id":"https://openalex.org/F4320312069","funder_display_name":"Deutsches Zentrum f\u00fcr Herz-Kreislaufforschung"},{"id":"https://openalex.org/G687154478","display_name":null,"funder_award_id":"81Z0200104","funder_id":"https://openalex.org/F4320312069","funder_display_name":"Deutsches Zentrum f\u00fcr Herz-Kreislaufforschung"},{"id":"https://openalex.org/G8387754326","display_name":"SFB 1531: Schadenskontrolle durch das Stromavaskul\u00e4re Kompartiment","funder_award_id":"456687919","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320312069","display_name":"Deutsches Zentrum f\u00fcr Herz-Kreislaufforschung","ror":"https://ror.org/031t5w623"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416205387.pdf","grobid_xml":"https://content.openalex.org/works/W4416205387.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1580018887","https://openalex.org/W1981179223","https://openalex.org/W2038277655","https://openalex.org/W2081209272","https://openalex.org/W2168082531","https://openalex.org/W2181255501","https://openalex.org/W2328206105","https://openalex.org/W2487898712","https://openalex.org/W2612519453","https://openalex.org/W2890977746","https://openalex.org/W2901677030","https://openalex.org/W2937229868","https://openalex.org/W2951381561","https://openalex.org/W2980495984","https://openalex.org/W2984629040","https://openalex.org/W2998851712","https://openalex.org/W3010809227","https://openalex.org/W3088401235","https://openalex.org/W3090883107","https://openalex.org/W3113178943","https://openalex.org/W3120089253","https://openalex.org/W3125573011","https://openalex.org/W3164692211","https://openalex.org/W3169674085","https://openalex.org/W3178382813","https://openalex.org/W4212829112","https://openalex.org/W4213100671","https://openalex.org/W4280596398","https://openalex.org/W4283016605","https://openalex.org/W4283390936","https://openalex.org/W4293581826","https://openalex.org/W4294541781","https://openalex.org/W4294782864","https://openalex.org/W4294884148","https://openalex.org/W4296185277","https://openalex.org/W4304187556","https://openalex.org/W4321370697","https://openalex.org/W4378838672","https://openalex.org/W4379879135","https://openalex.org/W4385688127","https://openalex.org/W4386416503","https://openalex.org/W4391448127","https://openalex.org/W4391616939","https://openalex.org/W4391826537","https://openalex.org/W4392168151","https://openalex.org/W4393043593","https://openalex.org/W4393934312","https://openalex.org/W4394852369","https://openalex.org/W4399394500","https://openalex.org/W4401165182","https://openalex.org/W4402902773","https://openalex.org/W4404349502","https://openalex.org/W4404667490"],"related_works":[],"abstract_inverted_index":{"Single-cell":[0],"transcriptomics":[1],"offers":[2],"critical":[3],"insights":[4,124],"into":[5,125],"the":[6,26,33,112],"molecular":[7],"mechanisms":[8,22],"of":[9,29,114,128],"heart":[10],"failure":[11],"(HF)":[12],"with":[13,86],"reduced":[14],"or":[15],"preserved":[16],"ejection":[17],"fraction.":[18],"However,":[19],"understanding":[20],"these":[21,52,87],"is":[23],"hindered":[24],"by":[25,54],"growing":[27],"complexity":[28],"single-cell":[30],"data":[31],"and":[32,61,137],"difficulty":[34],"in":[35,71,116,140],"unmasking":[36],"meaningful":[37],"differential":[38],"gene":[39],"signatures":[40],"among":[41],"HF":[42,118],"types.":[43],"Machine":[44],"learning,":[45],"particularly":[46],"deep":[47],"neural":[48],"networks":[49],"(NNs),":[50],"address":[51],"challenges":[53],"learning":[55],"transcriptional":[56],"patterns,":[57],"reconstructing":[58],"expression":[59],"profiles":[60],"effectively":[62],"classifying":[63],"cells":[64],"but":[65],"often":[66],"lacks":[67],"interpretability.":[68],"Recent":[69],"advances":[70],"explainable":[72],"AI":[73],"(XAI)":[74],"offer":[75],"tools":[76,88],"to":[77,96],"clarify":[78],"model":[79],"decisions.":[80],"Yet":[81],"pinpointing":[82],"differentially":[83,98],"regulated":[84],"genes":[85,100],"remains":[89],"challenging.":[90],"We":[91,110],"introduce":[92],"a":[93,131],"novel":[94],"method":[95],"identify":[97],"explained":[99],"(DXGs)":[101],"based":[102],"on":[103],"importance":[104],"scores":[105],"derived":[106],"from":[107],"custom-built":[108],"NNs.":[109],"highlight":[111],"superiority":[113],"DXGs":[115],"identifying":[117],"subtypes-specific":[119],"pathways":[120],"that":[121],"provide":[122],"new":[123],"different":[126],"types":[127],"HF.":[129],"Offering":[130],"robust":[132],"foundation":[133],"for":[134],"future":[135],"research":[136],"therapeutic":[138],"exploration":[139],"expanding":[141],"transcriptome":[142],"atlases.":[143]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-11-12T00:00:00"}
