{"id":"https://openalex.org/W4415146860","doi":"https://doi.org/10.1093/bib/bbaf539","title":"BioRAGent: natural language biomedical querying with retrieval-augmented multiagent systems","display_name":"BioRAGent: natural language biomedical querying with retrieval-augmented multiagent systems","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4415146860","doi":"https://doi.org/10.1093/bib/bbaf539","pmid":"https://pubmed.ncbi.nlm.nih.gov/41081729"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf539","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf539/64659570/bbaf539.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf539/64659570/bbaf539.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5119985290","display_name":"Manlian Bi","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Manlian Bi","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037309581","display_name":"Zhijie Bao","orcid":"https://orcid.org/0000-0002-6261-7706"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhijie Bao","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","School of Data Science, Fudan University , No. 220 Handan Road, Shanghai 200433 ,","School of Data Science, Fudan University, No. 220 Handan Road, Shanghai 200433, China","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"School of Data Science, Fudan University , No. 220 Handan Road, Shanghai 200433 ,","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Data Science, Fudan University, No. 220 Handan Road, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Dongna Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Dongna Xie","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025003779","display_name":"Xiaohan Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xiaohan Xie","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082303138","display_name":"Changxiao Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Changxiao Yang","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577163","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0003-2766-3106"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I99418890","display_name":"Northwestern Polytechnic University","ror":"https://ror.org/05wn69s11","country_code":"US","type":"education","lineage":["https://openalex.org/I99418890"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI for Science Interdisciplinary Research Center, School of Computer Science, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I99418890"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , No. 1 Dongxiang Road, Xi\u2019an 710129 ,","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, No. 1 Dongxiang Road, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.9207,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.91548826,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9661999940872192,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6320000290870667},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.49779999256134033},{"id":"https://openalex.org/keywords/natural-language-understanding","display_name":"Natural language understanding","score":0.3734999895095825},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.3091999888420105},{"id":"https://openalex.org/keywords/multi-agent-system","display_name":"Multi-agent system","score":0.30059999227523804},{"id":"https://openalex.org/keywords/intelligent-agent","display_name":"Intelligent agent","score":0.2935999929904938}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8507000207901001},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6320000290870667},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.49779999256134033},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4650999903678894},{"id":"https://openalex.org/C2779439875","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Natural language understanding","level":3,"score":0.3734999895095825},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3416000008583069},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.3091999888420105},{"id":"https://openalex.org/C41550386","wikidata":"https://www.wikidata.org/wiki/Q529909","display_name":"Multi-agent system","level":2,"score":0.30059999227523804},{"id":"https://openalex.org/C74072328","wikidata":"https://www.wikidata.org/wiki/Q1142726","display_name":"Intelligent agent","level":2,"score":0.2935999929904938},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.29100000858306885},{"id":"https://openalex.org/C174252522","wikidata":"https://www.wikidata.org/wiki/Q3816772","display_name":"Natural language user interface","level":3,"score":0.288100004196167},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2865999937057495},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2815000116825104},{"id":"https://openalex.org/C2776187449","wikidata":"https://www.wikidata.org/wiki/Q1513879","display_name":"Natural language generation","level":3,"score":0.2721000015735626},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.25529998540878296},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2517000138759613}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf539","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf539/64659570/bbaf539.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41081729","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41081729","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11324622","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12516949","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12516949/pdf/bbaf539.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf539","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf539/64659570/bbaf539.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4789861363","display_name":null,"funder_award_id":"92370106","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G535927982","display_name":null,"funder_award_id":"62072376","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415146860.pdf","grobid_xml":"https://content.openalex.org/works/W4415146860.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1509844421","https://openalex.org/W2094010958","https://openalex.org/W2114888488","https://openalex.org/W2123152121","https://openalex.org/W2141132558","https://openalex.org/W2286261512","https://openalex.org/W2558643140","https://openalex.org/W2785664611","https://openalex.org/W2969628488","https://openalex.org/W2973267506","https://openalex.org/W2999574254","https://openalex.org/W3095580221","https://openalex.org/W3198080531","https://openalex.org/W4297253404","https://openalex.org/W4309674289","https://openalex.org/W4320165837","https://openalex.org/W4361001766","https://openalex.org/W4361289889","https://openalex.org/W4366563389","https://openalex.org/W4381587418","https://openalex.org/W4384071683","https://openalex.org/W4385287322","https://openalex.org/W4385474529","https://openalex.org/W4388615740","https://openalex.org/W4388616071","https://openalex.org/W4391873151","https://openalex.org/W4400657362","https://openalex.org/W4401042992","https://openalex.org/W4402092105","https://openalex.org/W4404225840","https://openalex.org/W4404458588","https://openalex.org/W4405219055","https://openalex.org/W4405807737","https://openalex.org/W4409166206"],"related_works":[],"abstract_inverted_index":{"Understanding":[0],"the":[1,27,30,51,96,120,138],"roles":[2],"of":[3,19,29,53,98,103,126,140],"genes,":[4,63],"phenotypes,":[5,64],"and":[6,16,66,80,89,106,122],"diseases":[7],"is":[8],"crucial":[9],"for":[10],"advancing":[11],"biomedical":[12,20,38,87],"research.":[13],"However,":[14],"efficient":[15],"accessible":[17],"retrieval":[18,145],"knowledge":[21],"remains":[22],"a":[23,47,101],"challenge":[24],"due":[25],"to":[26,84,90],"complexity":[28],"relevant":[31],"data.":[32],"We":[33,94],"introduce":[34],"BioRAGent,":[35,127],"an":[36],"intelligent":[37],"assistant":[39],"that":[40],"combines":[41],"Tool-augmented":[42],"retrieval-augmented":[43],"generation":[44],"(RAG)":[45],"with":[46,114],"multiagent":[48],"system.":[49],"Leveraging":[50],"ability":[52],"large":[54],"language":[55,60],"models,":[56],"BioRAGent":[57,69,99],"facilitates":[58],"natural":[59],"queries":[61],"about":[62],"diseases,":[65],"their":[67],"interrelationships.":[68],"employs":[70],"three":[71,107],"specialized":[72],"agents:":[73],"Guide":[74],"(query":[75],"optimization),":[76],"Retriever":[77],"(data":[78],"retrieval),":[79],"Reviewer":[81],"(answer":[82],"validation)":[83],"access":[85],"authoritative":[86],"databases":[88],"generate":[91],"accurate":[92],"responses.":[93],"evaluate":[95],"performance":[97],"on":[100],"benchmark":[102],"eleven":[104],"single-hop":[105],"multi-hop":[108,132],"tasks,":[109],"demonstrating":[110],"superior":[111],"results":[112],"compared":[113],"state-of-the-art":[115],"models.":[116],"User":[117],"evaluations":[118],"highlight":[119],"practicality":[121],"robust":[123],"user":[124],"experience":[125],"particularly":[128],"in":[129,143],"handling":[130],"complex":[131],"queries.":[133],"Moreover,":[134],"ablation":[135],"experiments":[136],"validate":[137],"contribution":[139],"each":[141],"agent":[142],"improving":[144],"accuracy.":[146]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-14T00:00:00"}