{"id":"https://openalex.org/W4415085686","doi":"https://doi.org/10.1093/bib/bbaf532","title":"MODA: a graph convolutional network-based multi-omics integration framework for unraveling hub molecules and disease mechanisms","display_name":"MODA: a graph convolutional network-based multi-omics integration framework for unraveling hub molecules and disease mechanisms","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4415085686","doi":"https://doi.org/10.1093/bib/bbaf532","pmid":"https://pubmed.ncbi.nlm.nih.gov/41071612"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf532","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf532/64613018/bbaf532.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf532/64613018/bbaf532.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101840434","display_name":"Jinhui Zhao","orcid":"https://orcid.org/0000-0002-3584-3572"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinhui Zhao","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066415299","display_name":"Yanyan Zhou","orcid":"https://orcid.org/0000-0001-5460-8917"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I191996457","display_name":"Dalian Medical University","ror":"https://ror.org/04c8eg608","country_code":"CN","type":"education","lineage":["https://openalex.org/I191996457"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanyan Zhou","raw_affiliation_strings":["Hepatobiliary Surgery Department, Dalian Medical University , No. 9, West Section of Lvshun South Road, Dalian 116044 ,","Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","Hepatobiliary Surgery Department, Dalian Medical University, No. 9, West Section of Lvshun South Road, Dalian 116044, P.R. China","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hepatobiliary Surgery Department, Dalian Medical University , No. 9, West Section of Lvshun South Road, Dalian 116044 ,","institution_ids":["https://openalex.org/I191996457"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Hepatobiliary Surgery Department, Dalian Medical University, No. 9, West Section of Lvshun South Road, Dalian 116044, P.R. China","institution_ids":["https://openalex.org/I191996457"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101886499","display_name":"Han Bao","orcid":"https://orcid.org/0000-0001-5715-6768"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Bao","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101552461","display_name":"Xinjie Zhao","orcid":"https://orcid.org/0000-0002-1963-2126"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinjie Zhao","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406848","display_name":"Xinxin Wang","orcid":"https://orcid.org/0000-0003-2307-1736"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinxin Wang","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100750958","display_name":"Chunxia Zhao","orcid":"https://orcid.org/0000-0001-9451-1052"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunxia Zhao","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057762861","display_name":"Wangshu Qin","orcid":"https://orcid.org/0009-0004-3123-371X"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wangshu Qin","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":"https://orcid.org/0009-0004-3123-371X","affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001405633","display_name":"Xin Lu","orcid":"https://orcid.org/0000-0001-5569-1740"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xin Lu","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":"https://orcid.org/0000-0001-5569-1740","affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031458824","display_name":"Guowang Xu","orcid":"https://orcid.org/0000-0003-4298-3554"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guowang Xu","raw_affiliation_strings":["Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023 ,","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 1 Yanqihu East Road, Huairou District, Beijing 100049 ,","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Liaoning Province Key Laboratory of Metabolomics, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I153374732"]},{"raw_affiliation_string":"State Key Laboratory of Medical Proteomics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, No. 457 Zhongshan Road, Shahekou District, Dalian, Liaoning 116023, P.R. China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, No. 1 Yanqihu East Road, Huairou District, Beijing 100049, P.R. China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001405633","https://openalex.org/A5031458824"],"corresponding_institution_ids":["https://openalex.org/I153374732","https://openalex.org/I180585399","https://openalex.org/I4210165038"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":1.5386,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.83296784,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.932699978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.901199996471405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.6474999785423279},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5286999940872192},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.43380001187324524},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.34790000319480896},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.3377000093460083},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.3352999985218048},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.33500000834465027},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.3230000138282776}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7671999931335449},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.6474999785423279},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5286999940872192},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.43380001187324524},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37599998712539673},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3716000020503998},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.34790000319480896},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.3377000093460083},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.3352999985218048},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.33500000834465027},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33480000495910645},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3230000138282776},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.31290000677108765},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.2808000147342682},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.2775999903678894},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.272599995136261},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.2721000015735626},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.2718000113964081},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.26739999651908875},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.26510000228881836},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.2630000114440918},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.2563999891281128},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2506999969482422}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf532","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf532/64613018/bbaf532.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41071612","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41071612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:11320915","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12513173","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf532","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf532","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf532/64613018/bbaf532.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4083726514","display_name":null,"funder_award_id":"2023JH2/10700023","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4333433250","display_name":null,"funder_award_id":"2023JH2","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4351210934","display_name":null,"funder_award_id":"22274153","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5812211383","display_name":null,"funder_award_id":"DNL-YL A202202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6098936151","display_name":null,"funder_award_id":"DICP I202334","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G614732774","display_name":null,"funder_award_id":"DICP I202334","funder_id":"https://openalex.org/F4320334825","funder_display_name":"Dalian Institute of Chemical Physics"},{"id":"https://openalex.org/G6185897421","display_name":null,"funder_award_id":"22434006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G683799650","display_name":null,"funder_award_id":"DNL-YL A202202","funder_id":"https://openalex.org/F4320338190","funder_display_name":"Dalian National Laboratory for Clean Energy"},{"id":"https://openalex.org/G7307749321","display_name":null,"funder_award_id":"I202334","funder_id":"https://openalex.org/F4320334825","funder_display_name":"Dalian Institute of Chemical Physics"},{"id":"https://openalex.org/G7832354995","display_name":null,"funder_award_id":"22274151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334825","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54"},{"id":"https://openalex.org/F4320338190","display_name":"Dalian National Laboratory for Clean Energy","ror":"https://ror.org/04b7wbe03"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415085686.pdf","grobid_xml":"https://content.openalex.org/works/W4415085686.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1964007670","https://openalex.org/W2046233258","https://openalex.org/W2149360212","https://openalex.org/W2339798133","https://openalex.org/W2461193038","https://openalex.org/W2503524587","https://openalex.org/W2762019694","https://openalex.org/W2791549657","https://openalex.org/W2950985821","https://openalex.org/W2954515343","https://openalex.org/W2964429304","https://openalex.org/W2969664314","https://openalex.org/W3027051073","https://openalex.org/W3037571551","https://openalex.org/W3055559170","https://openalex.org/W3083629186","https://openalex.org/W3121785319","https://openalex.org/W3133943662","https://openalex.org/W3157357317","https://openalex.org/W3176966473","https://openalex.org/W3184973844","https://openalex.org/W4200134243","https://openalex.org/W4210546025","https://openalex.org/W4210912154","https://openalex.org/W4220690199","https://openalex.org/W4282916079","https://openalex.org/W4283278748","https://openalex.org/W4283761081","https://openalex.org/W4289861103","https://openalex.org/W4297383569","https://openalex.org/W4300862723","https://openalex.org/W4308775252","https://openalex.org/W4312085640","https://openalex.org/W4313346475","https://openalex.org/W4319765238","https://openalex.org/W4362673398","https://openalex.org/W4378838672","https://openalex.org/W4382941165","https://openalex.org/W4390971876","https://openalex.org/W4392557146","https://openalex.org/W4396599905","https://openalex.org/W4398178359","https://openalex.org/W4399039725","https://openalex.org/W4400208189","https://openalex.org/W4400956442","https://openalex.org/W4401717937","https://openalex.org/W4403245828"],"related_works":[],"abstract_inverted_index":{"Advances":[0],"in":[1,127,143,155,177,186],"omics":[2,62,79],"technologies":[3],"provide":[4],"unprecedented":[5],"opportunities":[6],"for":[7,170,208],"systems":[8],"biology,":[9],"yet":[10],"integrating":[11],"multi-omics":[12,32,140,161],"data":[13,33,63,80,195],"remains":[14],"challenging":[15],"due":[16],"to":[17,43,77,91,119,159],"its":[18],"complexity,":[19],"heterogeneity,":[20],"and":[21,47,49,96,172,185,198,213],"the":[22,106,160,178],"sparsity":[23],"of":[24,108,163,180],"prior":[25,41],"knowledge":[26,42,75],"networks.":[27],"Here,":[28],"we":[29],"introduce":[30],"a":[31,65,73,100,167,205],"integration":[34,141],"analysis":[35],"(MODA)":[36],"framework":[37],"that":[38,69,124,135],"fully":[39],"incorporates":[40],"identify":[44],"hub":[45],"molecules":[46,98],"pathways,":[48],"elucidate":[50],"biological":[51,74,148],"mechanisms.":[52],"By":[53],"leveraging":[54],"multiple":[55,128],"machine":[56],"learning":[57],"approaches,":[58],"MODA":[59,104,136,151,202],"transforms":[60],"raw":[61],"into":[64],"feature":[66],"importance":[67],"matrix":[68],"is":[70],"mapped":[71],"onto":[72],"graph":[76,85],"mitigate":[78],"noise.":[81],"Then,":[82],"it":[83],"uses":[84],"convolutional":[86],"networks":[87],"with":[88],"attention":[89],"mechanisms":[90,212],"capture":[92],"intricate":[93],"molecular":[94],"relationships":[95],"rank":[97],"via":[99],"feature-selective":[101],"layer.":[102],"Ultimately,":[103],"transcends":[105],"limitations":[107],"predefined":[109],"pathway":[110],"annotations":[111],"by":[112,175],"employing":[113],"an":[114],"overlapping":[115],"community":[116],"detection":[117],"algorithm":[118],"extract":[120],"core":[121],"functional":[122],"modules":[123],"are":[125],"involved":[126],"pivotal":[129],"disease":[130,211],"pathways.":[131],"Systematic":[132],"evaluations":[133],"show":[134],"outperforms":[137],"seven":[138],"existing":[139],"methods":[142],"classification":[144],"performance":[145],"while":[146],"maintaining":[147],"interpretability.":[149],"Moreover,":[150],"achieves":[152],"superior":[153],"stability":[154],"pan-cancer":[156],"datasets.":[157],"Application":[158],"datasets":[162],"prostate":[164,181],"cancer":[165],"reveals":[166],"key":[168],"role":[169],"carnitine":[171],"palmitoylcarnitine,":[173],"regulated":[174],"BBOX1":[176],"progression":[179],"cancer.":[182],"Population":[183],"samples":[184],"vitro":[187],"experiments":[188],"further":[189],"validate":[190],"these":[191],"findings.":[192],"With":[193],"high":[194],"utilization":[196],"efficiency":[197],"low":[199],"computational":[200],"cost,":[201],"serves":[203],"as":[204],"robust":[206],"tool":[207],"uncovering":[209],"novel":[210],"advancing":[214],"precision":[215],"medicine.":[216]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-12T00:00:00"}
