{"id":"https://openalex.org/W4415217286","doi":"https://doi.org/10.1093/bib/bbaf529","title":"MRDadaptis: self-adaptive parameter configuration enhances minimal residual disease detection in heterogeneous ctDNA samples","display_name":"MRDadaptis: self-adaptive parameter configuration enhances minimal residual disease detection in heterogeneous ctDNA samples","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4415217286","doi":"https://doi.org/10.1093/bib/bbaf529","pmid":"https://pubmed.ncbi.nlm.nih.gov/41092060"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf529","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf529/64711730/bbaf529.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf529/64711730/bbaf529.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019682437","display_name":"Tianci Wang","orcid":"https://orcid.org/0000-0002-4875-3488"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianci Wang","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":"https://orcid.org/0000-0002-4875-3488","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010224302","display_name":"Xin Lai","orcid":"https://orcid.org/0000-0003-4913-5822"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Lai","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694725","display_name":"Shenjie Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131893","display_name":"Second Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/03aq7kf18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210131893"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shenjie Wang","raw_affiliation_strings":["Department of Respiratory Medicine, The Second Affiliated Hospital of Xi\u2019an Jiaotong University, \u00a0 No. 157, Xiwu Road, Xincheng District, Xi\u2019an 710003 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Medicine, The Second Affiliated Hospital of Xi\u2019an Jiaotong University, \u00a0 No. 157, Xiwu Road, Xincheng District, Xi\u2019an 710003 ,","institution_ids":["https://openalex.org/I4210131893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032318263","display_name":"Zhengfa Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengfa Xue","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067706647","display_name":"Yuqian Liu","orcid":"https://orcid.org/0000-0001-6210-1147"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqian Liu","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452974","display_name":"Xiaoyan Zhu","orcid":"https://orcid.org/0000-0002-7173-7793"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Zhu","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100410939","display_name":"Xiaonan Wang","orcid":"https://orcid.org/0000-0001-9775-2417"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaonan Wang","raw_affiliation_strings":["Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081685345","display_name":"Zhili Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhili Chang","raw_affiliation_strings":["Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003742311","display_name":"Yang Shao","orcid":"https://orcid.org/0000-0003-4585-1792"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Shao","raw_affiliation_strings":["Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,"],"raw_orcid":"https://orcid.org/0000-0003-4585-1792","affiliations":[{"raw_affiliation_string":"Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438851","display_name":"Xian Zhang","orcid":"https://orcid.org/0000-0002-6055-0130"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xian Zhang","raw_affiliation_strings":["Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Geneseeq Technology Inc. , 128 Huakang Road, Pukou, Nanjing 211800 ,","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027360778","display_name":"Jiayin Wang","orcid":"https://orcid.org/0000-0002-3862-6557"},"institutions":[{"id":"https://openalex.org/I4210131893","display_name":"Second Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/03aq7kf18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210131893"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayin Wang","raw_affiliation_strings":["Department of Respiratory Medicine, The Second Affiliated Hospital of Xi\u2019an Jiaotong University, \u00a0 No. 157, Xiwu Road, Xincheng District, Xi\u2019an 710003 ,","School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,"],"raw_orcid":"https://orcid.org/0000-0002-3862-6557","affiliations":[{"raw_affiliation_string":"Department of Respiratory Medicine, The Second Affiliated Hospital of Xi\u2019an Jiaotong University, \u00a0 No. 157, Xiwu Road, Xincheng District, Xi\u2019an 710003 ,","institution_ids":["https://openalex.org/I4210131893"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shaanxi Engineering Research Center of Medical and Health Big Data, Xi\u2019an Jiaotong University , 28 Xianning West Road, Beilin, Xi\u2019an 710049 ,","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.32138489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circulating-tumor-dna","display_name":"Circulating tumor DNA","score":0.6751000285148621},{"id":"https://openalex.org/keywords/residual","display_name":"Residual","score":0.5271999835968018},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.47920000553131104},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.47119998931884766},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.4049000144004822},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.35679998993873596},{"id":"https://openalex.org/keywords/bayesian-optimization","display_name":"Bayesian optimization","score":0.35429999232292175},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.3517000079154968}],"concepts":[{"id":"https://openalex.org/C2781335228","wikidata":"https://www.wikidata.org/wiki/Q19596321","display_name":"Circulating tumor DNA","level":3,"score":0.6751000285148621},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6384000182151794},{"id":"https://openalex.org/C155512373","wikidata":"https://www.wikidata.org/wiki/Q287450","display_name":"Residual","level":2,"score":0.5271999835968018},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.47920000553131104},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.47119998931884766},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4174000024795532},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.4049000144004822},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3801000118255615},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.35679998993873596},{"id":"https://openalex.org/C2778049539","wikidata":"https://www.wikidata.org/wiki/Q17002908","display_name":"Bayesian optimization","level":2,"score":0.35429999232292175},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.3517000079154968},{"id":"https://openalex.org/C2779823535","wikidata":"https://www.wikidata.org/wiki/Q6865356","display_name":"Minimal residual disease","level":3,"score":0.3481999933719635},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3248000144958496},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.32179999351501465},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.303600013256073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27799999713897705},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.26899999380111694},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.26739999651908875},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.2648000121116638},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.26179999113082886},{"id":"https://openalex.org/C2778445095","wikidata":"https://www.wikidata.org/wiki/Q18354077","display_name":"Sample complexity","level":2,"score":0.25850000977516174}],"mesh":[{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018365","descriptor_name":"Neoplasm, Residual","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf529","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf529/64711730/bbaf529.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41092060","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41092060","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11332245","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12527258","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf529","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf529/64711730/bbaf529.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2715084110","display_name":null,"funder_award_id":"62402376","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3180425335","display_name":null,"funder_award_id":"72293581","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G516663181","display_name":null,"funder_award_id":"72274152","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6671363317","display_name":null,"funder_award_id":"62572389","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4415217286.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W2029996495","https://openalex.org/W2065817684","https://openalex.org/W2067983896","https://openalex.org/W2109523262","https://openalex.org/W2111350087","https://openalex.org/W2119582595","https://openalex.org/W2141287548","https://openalex.org/W2146005104","https://openalex.org/W2154397429","https://openalex.org/W2235737683","https://openalex.org/W2791649658","https://openalex.org/W2810592374","https://openalex.org/W2948024819","https://openalex.org/W2949522823","https://openalex.org/W2950833487","https://openalex.org/W2963186762","https://openalex.org/W2963499961","https://openalex.org/W2968680829","https://openalex.org/W3004540857","https://openalex.org/W3021225320","https://openalex.org/W3023407070","https://openalex.org/W3134382826","https://openalex.org/W3179950556","https://openalex.org/W3199234432","https://openalex.org/W4213349489","https://openalex.org/W4214821232","https://openalex.org/W4291950457","https://openalex.org/W4313595227","https://openalex.org/W4317883989","https://openalex.org/W4318479427","https://openalex.org/W4367299915","https://openalex.org/W4382052004","https://openalex.org/W4387949708","https://openalex.org/W4389904066","https://openalex.org/W4390500910","https://openalex.org/W4392089907","https://openalex.org/W4394917946","https://openalex.org/W4400457192","https://openalex.org/W4405039258","https://openalex.org/W4405134536","https://openalex.org/W4406229659","https://openalex.org/W4410216721"],"related_works":[],"abstract_inverted_index":{"Detection":[0],"of":[1,24,31,72,180,195],"structural":[2,36],"variations":[3],"(SVs)":[4],"through":[5,198],"circulating":[6],"tumor":[7],"DNA":[8],"(ctDNA)":[9],"has":[10],"become":[11],"a":[12,85,93],"key":[13],"method":[14],"for":[15,48],"detecting":[16,197],"minimal":[17],"residual":[18],"disease":[19],"(MRD).":[20],"However,":[21],"the":[22,69,120,177,191],"heterogeneity":[23],"ctDNA":[25,121,154,199],"samples,":[26],"characterized":[27],"by":[28,68,101],"variable":[29],"limits":[30],"detection":[32,41,51,88,111,141,144],"(LOD)":[33],"and":[34,43,56,75,143,152,165,193],"diverse":[35],"variant":[37],"types,":[38],"significantly":[39,139],"impacts":[40],"stability":[42,167],"performance,":[44],"posing":[45],"persistent":[46],"challenges":[47],"conventional":[49],"SV":[50,87],"tools":[52],"such":[53],"as":[54],"Delly":[55],"Manta.":[57],"These":[58,174],"widely":[59],"used":[60],"methods":[61],"require":[62],"extensive":[63],"manual":[64,131],"parameter":[65,95],"tuning,":[66],"hindered":[67],"combinatorial":[70],"complexity":[71],"multiple":[73],"parameters":[74,112],"heterogeneous":[76],"sequencing":[77,122],"data.":[78],"To":[79],"address":[80],"this,":[81],"we":[82],"propose":[83],"MRDadaptis,":[84],"novel":[86],"tool":[89],"that":[90],"uniquely":[91],"incorporates":[92],"self-adaptive":[94],"optimization":[96,104],"mechanism.":[97],"MRDadaptis":[98,181],"distinguishes":[99],"itself":[100],"integrating":[102],"Bayesian":[103],"with":[105],"meta-learning":[106],"techniques":[107],"to":[108,189],"dynamically":[109],"adjust":[110],"automatically,":[113],"based":[114],"on":[115],"intrinsic":[116],"features":[117],"derived":[118],"from":[119],"data":[123],"itself.":[124],"This":[125],"innovative":[126],"approach":[127],"not":[128],"only":[129],"reduces":[130],"intervention":[132],"but":[133],"also":[134],"effectively":[135],"captures":[136],"sample-specific":[137],"characteristics,":[138],"improving":[140],"stability,":[142],"performance.":[145],"Extensive":[146],"validation":[147],"experiments":[148],"using":[149],"both":[150],"simulated":[151],"real-world":[153],"datasets":[155],"demonstrates":[156],"it":[157],"distinct":[158],"advantages,":[159],"including":[160],"markedly":[161],"improved":[162],"average":[163],"F1-scores":[164],"superior":[166],"(reduced":[168],"variance,":[169],"lower":[170],"RMSE,":[171],"increased":[172],"kurtosis).":[173],"results":[175],"highlight":[176],"significant":[178],"advantages":[179],"in":[182],"addressing":[183],"sample":[184],"heterogeneity,":[185],"underscoring":[186],"its":[187],"potential":[188],"improve":[190],"accuracy":[192],"reliability":[194],"MRD":[196],"analysis.":[200],"https://github.com/aAT0047/MRDadaptis.git.":[201]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-16T00:00:00"}
