{"id":"https://openalex.org/W4414625538","doi":"https://doi.org/10.1093/bib/bbaf513","title":"soFusion: facilitating tissue structure identification via spatial multi-omics data fusion","display_name":"soFusion: facilitating tissue structure identification via spatial multi-omics data fusion","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414625538","doi":"https://doi.org/10.1093/bib/bbaf513","pmid":"https://pubmed.ncbi.nlm.nih.gov/41020524"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf513","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf513","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006824735","display_name":"Na Yu","orcid":"https://orcid.org/0000-0002-1154-3348"},"institutions":[{"id":"https://openalex.org/I3133055985","display_name":"Westlake University","ror":"https://ror.org/05hfa4n20","country_code":"CN","type":"education","lineage":["https://openalex.org/I3133055985"]},{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Yu","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","School of Life Sciences, Westlake University , No. 18, Shilongshan Road, Xihu District, Hangzhou, Zhejiang 310024 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","School of Life Sciences, Westlake University, No. 18, Shilongshan Road, Xihu District, Hangzhou, Zhejiang 310024, China"],"raw_orcid":"https://orcid.org/0000-0002-1154-3348","affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"School of Life Sciences, Westlake University , No. 18, Shilongshan Road, Xihu District, Hangzhou, Zhejiang 310024 ,","institution_ids":["https://openalex.org/I3133055985"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"School of Life Sciences, Westlake University, No. 18, Shilongshan Road, Xihu District, Hangzhou, Zhejiang 310024, China","institution_ids":["https://openalex.org/I3133055985"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047599605","display_name":"Wenrui Li","orcid":"https://orcid.org/0009-0009-5328-2287"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenrui Li","raw_affiliation_strings":["MOE Key Lab of Bioinformatics and Bioinformatics Division of BNRIST, Department of Automation, Tsinghua University , No 30, Shuangqing road, Haidian district, Beijing 100084 ,","MOE Key Lab of Bioinformatics and Bioinformatics Division of BNRIST, Department of Automation, Tsinghua University, No 30, Shuangqing road, Haidian district, Beijing 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MOE Key Lab of Bioinformatics and Bioinformatics Division of BNRIST, Department of Automation, Tsinghua University , No 30, Shuangqing road, Haidian district, Beijing 100084 ,","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"MOE Key Lab of Bioinformatics and Bioinformatics Division of BNRIST, Department of Automation, Tsinghua University, No 30, Shuangqing road, Haidian district, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102369850","display_name":"Xue Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue Sun","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074859921","display_name":"Jing Hu","orcid":"https://orcid.org/0000-0002-8948-0711"},"institutions":[{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]},{"id":"https://openalex.org/I4210161528","display_name":"Qilu Hospital of Shandong University","ror":"https://ror.org/056ef9489","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210161528"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jing Hu","raw_affiliation_strings":["Department of Pathology, Qilu Hospital, Shandong University , No. 107, Wenhua Xilu, Lixia District, Jinan, ShanDong 250012 ,","Michigan Center for Translational Pathology, University of Michigan , 1500 E. Medical Center Dr., Rogel Cancer Center, Ann Arbor, MI 48109-0940 ,","Michigan Center for Translational Pathology, University of Michigan, 1500 E. Medical Center Dr., Rogel Cancer Center, Ann Arbor, MI 48109-0940, United States","Department of Pathology, Qilu Hospital, Shandong University, No. 107, Wenhua Xilu, Lixia District, Jinan, ShanDong 250012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Qilu Hospital, Shandong University , No. 107, Wenhua Xilu, Lixia District, Jinan, ShanDong 250012 ,","institution_ids":["https://openalex.org/I4210161528"]},{"raw_affiliation_string":"Michigan Center for Translational Pathology, University of Michigan , 1500 E. Medical Center Dr., Rogel Cancer Center, Ann Arbor, MI 48109-0940 ,","institution_ids":["https://openalex.org/I4210117557"]},{"raw_affiliation_string":"Michigan Center for Translational Pathology, University of Michigan, 1500 E. Medical Center Dr., Rogel Cancer Center, Ann Arbor, MI 48109-0940, United States","institution_ids":["https://openalex.org/I4210117557"]},{"raw_affiliation_string":"Department of Pathology, Qilu Hospital, Shandong University, No. 107, Wenhua Xilu, Lixia District, Jinan, ShanDong 250012, China","institution_ids":["https://openalex.org/I4210161528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032177649","display_name":"Qi Zou","orcid":"https://orcid.org/0000-0002-8662-5874"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Zou","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001552700","display_name":"Zhi\u2010Ping Liu","orcid":"https://orcid.org/0000-0001-7742-9161"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiping Liu","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China"],"raw_orcid":"https://orcid.org/0000-0001-7742-9161","affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046409597","display_name":"Daoliang Zhang","orcid":"https://orcid.org/0009-0009-7682-6187"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Daoliang Zhang","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University , No. 825, Zhangheng Road, Pudong New Area, Shanghai 200433 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, No. 825, Zhangheng Road, Pudong New Area, Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University , No. 825, Zhangheng Road, Pudong New Area, Shanghai 200433 ,","institution_ids":["https://openalex.org/I4210164150"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, No. 825, Zhangheng Road, Pudong New Area, Shanghai 200433, China","institution_ids":["https://openalex.org/I4210164150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100761365","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0003-4264-5758"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China"],"raw_orcid":"https://orcid.org/0000-0003-4264-5758","affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023736025","display_name":"Rui Gao","orcid":"https://orcid.org/0000-0002-3599-7678"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Rui Gao","raw_affiliation_strings":["Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China"],"raw_orcid":"https://orcid.org/0000-0002-3599-7678","affiliations":[{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University , No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061 ,","institution_ids":["https://openalex.org/I34949971"]},{"raw_affiliation_string":"Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, No. 17923, Jingshi Road, Lixia District, Jinan, Shandong 250061, China","institution_ids":["https://openalex.org/I34949971"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023736025","https://openalex.org/A5046409597","https://openalex.org/A5100761365"],"corresponding_institution_ids":["https://openalex.org/I34949971","https://openalex.org/I4210164150"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8435,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73654344,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9114999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9082000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.669700026512146},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6208999752998352},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5540000200271606},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48829999566078186},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4657000005245209},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4226999878883362},{"id":"https://openalex.org/keywords/hyperspectral-imaging","display_name":"Hyperspectral imaging","score":0.40540000796318054},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40299999713897705},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.35100001096725464}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6977999806404114},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.669700026512146},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6208999752998352},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5540000200271606},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5514000058174133},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48829999566078186},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4657000005245209},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4226999878883362},{"id":"https://openalex.org/C159078339","wikidata":"https://www.wikidata.org/wiki/Q959005","display_name":"Hyperspectral imaging","level":2,"score":0.40540000796318054},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40299999713897705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39259999990463257},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3671000003814697},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.35100001096725464},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.3481999933719635},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.33970001339912415},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.3337000012397766},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.31839999556541443},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.314300000667572},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.31279999017715454},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.27469998598098755},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.273499995470047},{"id":"https://openalex.org/C9770341","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Geospatial analysis","level":2,"score":0.2727000117301941},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2711000144481659},{"id":"https://openalex.org/C27511587","wikidata":"https://www.wikidata.org/wiki/Q2178623","display_name":"Spatial relation","level":2,"score":0.2709999978542328},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.260699987411499},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.25870001316070557},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.25459998846054077},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.25060001015663147},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.2500999867916107}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf513","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41020524","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41020524","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11288682","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12477611","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12477611","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12477611/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf513","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3962627399","display_name":null,"funder_award_id":"U1806202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4438589808","display_name":null,"funder_award_id":"ZR2023QF081","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G5202595935","display_name":null,"funder_award_id":"62303271","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6049953321","display_name":null,"funder_award_id":"82274320","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W2122874647","https://openalex.org/W2472507069","https://openalex.org/W2739492614","https://openalex.org/W2918621261","https://openalex.org/W3020317539","https://openalex.org/W3027051073","https://openalex.org/W3046747175","https://openalex.org/W3129866267","https://openalex.org/W3153110198","https://openalex.org/W3164692211","https://openalex.org/W3216000180","https://openalex.org/W4211225597","https://openalex.org/W4252058255","https://openalex.org/W4283815719","https://openalex.org/W4313454424","https://openalex.org/W4321611267","https://openalex.org/W4322768301","https://openalex.org/W4324344255","https://openalex.org/W4360999182","https://openalex.org/W4378212119","https://openalex.org/W4378212624","https://openalex.org/W4382632237","https://openalex.org/W4389243988","https://openalex.org/W4392044395","https://openalex.org/W4394011009","https://openalex.org/W4398240043","https://openalex.org/W4399201860","https://openalex.org/W4399892951","https://openalex.org/W4401250547","https://openalex.org/W4401454905","https://openalex.org/W4401843719","https://openalex.org/W4402590079","https://openalex.org/W4404815492","https://openalex.org/W4405127169","https://openalex.org/W4406688381","https://openalex.org/W4406820319","https://openalex.org/W4407707481","https://openalex.org/W4409190914"],"related_works":[],"abstract_inverted_index":{"The":[0],"rapid":[1],"advancement":[2],"of":[3,57,160],"spatial":[4,50,72,138,153,161],"multi-omics":[5,51,154],"technologies":[6],"has":[7],"opened":[8],"new":[9],"avenues":[10],"for":[11,35,46,89,152],"dissecting":[12],"tissue":[13,58],"architecture":[14],"with":[15,140],"unprecedented":[16],"resolution.":[17],"However,":[18],"inherent":[19],"disparities":[20],"across":[21],"omics":[22,73,108],"modalities,":[23],"such":[24],"as":[25],"differences":[26],"in":[27,106,132],"biological":[28],"hierarchy":[29],"and":[30,81,91,121,136,143],"resolution,":[31],"pose":[32],"significant":[33],"challenges":[34],"integrative":[36],"analysis.":[37],"To":[38,75],"address":[39],"this,":[40],"we":[41,84],"present":[42],"soFusion,":[43],"a":[44,62,86],"method":[45],"representation":[47],"learning":[48],"on":[49,113],"data":[52],"that":[53],"enables":[54],"automated":[55],"identification":[56],"compartmentalization.":[59],"soFusion":[60,112,127,147],"employs":[61],"graph":[63],"convolutional":[64],"network":[65],"(GCN)":[66],"to":[67,100],"extract":[68],"latent":[69],"embeddings":[70],"from":[71],"profiles.":[74],"simultaneously":[76],"capture":[77],"both":[78],"cross-modality":[79],"relationships":[80],"modality-specific":[82,96],"features,":[83],"introduce":[85],"novel":[87],"strategy":[88],"intra-":[90],"inter-omics":[92],"feature":[93],"learning.":[94],"Moreover,":[95],"decoders":[97],"are":[98],"designed":[99],"preserve":[101],"the":[102,158],"unique":[103],"information":[104],"embedded":[105],"each":[107],"type.":[109],"We":[110],"evaluated":[111],"multiple":[114],"datasets":[115],"including":[116],"gene":[117],"expression,":[118,120],"protein":[119],"epigenetic":[122],"features.":[123],"Across":[124],"all":[125],"benchmarks,":[126],"consistently":[128],"outperformed":[129],"existing":[130],"methods":[131],"delineating":[133],"anatomical":[134],"structures":[135],"identifying":[137],"domains":[139],"improved":[141],"continuity":[142],"reduced":[144],"noise.":[145],"Collectively,":[146],"offers":[148],"an":[149],"effective":[150],"solution":[151],"integration,":[155],"substantially":[156],"enhancing":[157],"robustness":[159],"domain":[162],"identification.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
