{"id":"https://openalex.org/W4414625645","doi":"https://doi.org/10.1093/bib/bbaf509","title":"INAB: identify nucleic acid binding domain via cross-modal protein language models and multiscale computation","display_name":"INAB: identify nucleic acid binding domain via cross-modal protein language models and multiscale computation","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414625645","doi":"https://doi.org/10.1093/bib/bbaf509","pmid":"https://pubmed.ncbi.nlm.nih.gov/41020638"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf509","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf509/64426907/bbaf509.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf509/64426907/bbaf509.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092344817","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0003-0484-0966"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I3131625388","display_name":"University Town of Shenzhen","ror":"https://ror.org/05f5j6225","country_code":"CN","type":"education","lineage":["https://openalex.org/I3131625388"]},{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China"],"raw_orcid":"https://orcid.org/0000-0003-0484-0966","affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I4210152380"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101972595","display_name":"Hao Zeng","orcid":"https://orcid.org/0000-0001-6821-8784"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I3131625388","display_name":"University Town of Shenzhen","ror":"https://ror.org/05f5j6225","country_code":"CN","type":"education","lineage":["https://openalex.org/I3131625388"]},{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Zeng","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I4210152380"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365536","display_name":"Junjie Chen","orcid":"https://orcid.org/0000-0002-0483-303X"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Chen","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen, Shenzhen 518060 ,","School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Shenzhen 518060, China"],"raw_orcid":"https://orcid.org/0000-0002-0483-303X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Shenzhen, Shenzhen 518060 ,","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213","https://openalex.org/I4210152380"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Shenzhen 518060, China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213","https://openalex.org/I4210152380"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I3131625388","display_name":"University Town of Shenzhen","ror":"https://ror.org/05f5j6225","country_code":"CN","type":"education","lineage":["https://openalex.org/I3131625388"]},{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China"],"raw_orcid":"https://orcid.org/0000-0001-8479-6904","affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I4210152380"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University , Shenzhen 518060 ,","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]},{"raw_affiliation_string":"School of Artificial Intelligence, Shenzhen University, Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I3131625388"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.9736,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76966568,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6951000094413757},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6237000226974487},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.616100013256073},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.42579999566078186},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.421999990940094},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.40549999475479126},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.39899998903274536},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.36239999532699585}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7355999946594238},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6951000094413757},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6237000226974487},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.616100013256073},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5393999814987183},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49239999055862427},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.42579999566078186},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.421999990940094},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.40549999475479126},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.39899998903274536},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3889999985694885},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.36239999532699585},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.3353999853134155},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.3343999981880188},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.32429999113082886},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.3034999966621399},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3028999865055084},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.30239999294281006},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.27250000834465027},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.26019999384880066},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.2526000142097473}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf509","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf509/64426907/bbaf509.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41020638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41020638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11288708","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12477684","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12477684","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12477684/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf509","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf509","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf509/64426907/bbaf509.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2756446455","display_name":null,"funder_award_id":"62302311","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3406309395","display_name":null,"funder_award_id":"2024A1515011681","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G5433012282","display_name":null,"funder_award_id":"2022YFF1202104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5759030989","display_name":null,"funder_award_id":"2025A1515010185","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G6276227692","display_name":null,"funder_award_id":"62471310","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414625645.pdf","grobid_xml":"https://content.openalex.org/works/W4414625645.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1969156759","https://openalex.org/W2008708467","https://openalex.org/W2026690931","https://openalex.org/W2046792302","https://openalex.org/W2051210555","https://openalex.org/W2103148772","https://openalex.org/W2170747616","https://openalex.org/W2582176104","https://openalex.org/W2617750324","https://openalex.org/W2892720054","https://openalex.org/W3121281384","https://openalex.org/W3126876258","https://openalex.org/W3177828909","https://openalex.org/W4289110734","https://openalex.org/W4327550249","https://openalex.org/W4366239108","https://openalex.org/W4386470073","https://openalex.org/W4388231013","https://openalex.org/W4389076414","https://openalex.org/W4390991996","https://openalex.org/W4391291188","https://openalex.org/W4393159238","https://openalex.org/W4396721167","https://openalex.org/W4396871936"],"related_works":[],"abstract_inverted_index":{"Protein-nucleic":[0],"acid":[1,114],"interactions":[2],"play":[3],"a":[4,54,68,76,102],"crucial":[5],"role":[6],"in":[7,20,112,124],"biological":[8],"processes,":[9],"including":[10],"gene":[11],"regulation":[12],"and":[13,37,117,127],"editing.":[14],"Accurately":[15],"identifying":[16],"nucleic":[17,57],"acid-binding":[18,58],"domains":[19],"proteins":[21],"is":[22],"essential":[23],"to":[24,47,121],"unravel":[25],"these":[26],"interactions,":[27],"yet":[28],"traditional":[29],"experimental":[30,91],"methods":[31],"like":[32],"X-ray":[33],"crystallography":[34],"remain":[35],"costly":[36],"time-intensive.":[38],"Computational":[39],"approaches":[40],"have":[41],"thus":[42],"emerged":[43],"as":[44],"indispensable":[45],"tools":[46],"complement":[48],"wet-lab":[49],"techniques.":[50],"Here,":[51],"we":[52],"introduce":[53],"framework":[55],"for":[56],"domain":[59],"prediction":[60],"by":[61],"integrating":[62],"cross-modal":[63],"protein":[64],"language":[65],"models":[66],"with":[67],"multiscale":[69],"computational":[70],"architecture.":[71],"The":[72],"proposed":[73],"method":[74],"leverages":[75],"structurally":[77],"annotated":[78],"benchmark":[79],"dataset,":[80],"which":[81],"quantifies":[82],"binding":[83],"likelihood":[84],"through":[85],"hierarchical,":[86],"proximity-based":[87],"labels":[88],"derived":[89],"from":[90],"complexes.":[92],"Evaluations":[93],"demonstrate":[94],"that":[95],"the":[96,106],"approach":[97],"achieves":[98],"state-of-the-art":[99],"performance,":[100],"providing":[101],"new":[103],"insight":[104],"into":[105],"design":[107],"of":[108],"multimodal":[109],"learning":[110],"systems":[111],"protein-nucleic":[113],"interaction":[115],"analysis":[116],"an":[118],"open":[119],"resource":[120],"accelerate":[122],"discoveries":[123],"functional":[125],"genomics":[126],"drug":[128],"design.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
