{"id":"https://openalex.org/W4414624754","doi":"https://doi.org/10.1093/bib/bbaf505","title":"Streamline automated biomedical discoveries with agentic bioinformatics","display_name":"Streamline automated biomedical discoveries with agentic bioinformatics","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414624754","doi":"https://doi.org/10.1093/bib/bbaf505","pmid":"https://pubmed.ncbi.nlm.nih.gov/41016012"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf505","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf505/64419628/bbaf505.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf505/64419628/bbaf505.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104653068","display_name":"Juexiao Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094016","display_name":"Candela (United States)","ror":"https://ror.org/00rj6k558","country_code":"US","type":"company","lineage":["https://openalex.org/I4210094016"]},{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I4210124601","display_name":"Department of Mathematical Sciences","ror":"https://ror.org/02xkdev90","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601"]},{"id":"https://openalex.org/I4210124892","display_name":"SynZyme Technologies (United States)","ror":"https://ror.org/02sgk9b41","country_code":"US","type":"company","lineage":["https://openalex.org/I4210124892"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CN","RU","SA","US"],"is_corresponding":true,"raw_author_name":"Juexiao Zhou","raw_affiliation_strings":["Center of Excellence for Smart Health, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Center of Excellence on Generative AI, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","King Abdullah University of Science and Technology (KAUST) , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","School of Data Science, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), Guangdong 518172 ,","Syneron Opal , 10281 ,","Syneron Opal, 10281, Cayman Island","School of Data Science, The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172, P.R. China","Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence for Smart Health, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Center of Excellence on Generative AI, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I4210124601"]},{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST) , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"School of Data Science, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), Guangdong 518172 ,","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Syneron Opal , 10281 ,","institution_ids":["https://openalex.org/I4210094016"]},{"raw_affiliation_string":"Syneron Opal, 10281, Cayman Island","institution_ids":["https://openalex.org/I4210124892"]},{"raw_affiliation_string":"School of Data Science, The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172, P.R. China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048356707","display_name":"Jindong Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I134687103","display_name":"Nanjing Tech University","ror":"https://ror.org/03sd35x91","country_code":"CN","type":"education","lineage":["https://openalex.org/I134687103"]},{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jindong Jiang","raw_affiliation_strings":["Department of Statistics, Nanjing University , Nanjing 210008 ,","Department of Statistics, Nanjing University, Nanjing 210008, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Nanjing University , Nanjing 210008 ,","institution_ids":["https://openalex.org/I881766915","https://openalex.org/I134687103","https://openalex.org/I119454577","https://openalex.org/I36399199"]},{"raw_affiliation_string":"Department of Statistics, Nanjing University, Nanjing 210008, China","institution_ids":["https://openalex.org/I881766915","https://openalex.org/I134687103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086112796","display_name":"Zhongyi Han","orcid":"https://orcid.org/0000-0003-2851-193X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]},{"id":"https://openalex.org/I4210124601","display_name":"Department of Mathematical Sciences","ror":"https://ror.org/02xkdev90","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["CN","RU","SA"],"is_corresponding":false,"raw_author_name":"Zhongyi Han","raw_affiliation_strings":["Center of Excellence for Smart Health, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Center of Excellence on Generative AI, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","King Abdullah University of Science and Technology (KAUST) , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","School of Software, Shandong University , Jinan 250101 ,","School of Software, Shandong University, Jinan 250101, China","Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence for Smart Health, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Center of Excellence on Generative AI, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I4210124601"]},{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST) , Computer, Electrical and Mathematical Sciences and Engineering Division, , Thuwal 23955-6900 ,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan 250101 ,","institution_ids":["https://openalex.org/I154099455","https://openalex.org/I34949971"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan 250101, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104135620","display_name":"Zijian Wang","orcid":"https://orcid.org/0009-0008-0388-1129"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zijian Wang","raw_affiliation_strings":["School of Data Science , The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172,","School of Data Science, The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data Science , The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172,","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"School of Data Science, The Chinese University of Hong Kong, Shenzhen (CUHK-Shenzhen), Guangdong 518172, P.R. China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072992339","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-3367-3725"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Center of Excellence for Smart Health , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","Center of Excellence on Generative AI , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence for Smart Health , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Center of Excellence on Generative AI , King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer Science Program , Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900,","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5104653068"],"corresponding_institution_ids":["https://openalex.org/I4210094016","https://openalex.org/I4210116924","https://openalex.org/I4210124601","https://openalex.org/I4210124892","https://openalex.org/I71920554"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.4297,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.94983579,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9143000245094299,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9143000245094299,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformative-learning","display_name":"Transformative learning","score":0.666100025177002},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.515500009059906},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5131000280380249},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5009999871253967},{"id":"https://openalex.org/keywords/grand-challenges","display_name":"Grand Challenges","score":0.424699991941452},{"id":"https://openalex.org/keywords/paradigm-shift","display_name":"Paradigm shift","score":0.30559998750686646},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.29840001463890076}],"concepts":[{"id":"https://openalex.org/C70587473","wikidata":"https://www.wikidata.org/wiki/Q7834111","display_name":"Transformative learning","level":2,"score":0.666100025177002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5630999803543091},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.515500009059906},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5131000280380249},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5009999871253967},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4909999966621399},{"id":"https://openalex.org/C2777362162","wikidata":"https://www.wikidata.org/wiki/Q5594431","display_name":"Grand Challenges","level":2,"score":0.424699991941452},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.334199994802475},{"id":"https://openalex.org/C43540301","wikidata":"https://www.wikidata.org/wiki/Q689971","display_name":"Paradigm shift","level":2,"score":0.30559998750686646},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.29840001463890076},{"id":"https://openalex.org/C207267971","wikidata":"https://www.wikidata.org/wiki/Q120208","display_name":"Emerging technologies","level":2,"score":0.287200003862381},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.2694000005722046},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.25699999928474426},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2565000057220459},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.25540000200271606},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2538999915122986},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.2531999945640564},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.25270000100135803}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf505","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf505/64419628/bbaf505.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41016012","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41016012","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11285466","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12476841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12476841","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12476841/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf505","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf505","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf505/64419628/bbaf505.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3518144781","display_name":null,"funder_award_id":"URF/1/4663-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G373900934","display_name":null,"funder_award_id":"REI/1/5404-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5289953175","display_name":null,"funder_award_id":"REI/1/5234-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5292232911","display_name":null,"funder_award_id":"REI/1/5992-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G6661931101","display_name":null,"funder_award_id":"REI/1/5414-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G7618909991","display_name":null,"funder_award_id":"REI/1/5289-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8166015131","display_name":null,"funder_award_id":"UDF01004172","funder_id":"https://openalex.org/F3953416623","funder_display_name":"Chinese University of Hong Kong, Shenzhen"}],"funders":[{"id":"https://openalex.org/F3953416623","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414624754.pdf","grobid_xml":"https://content.openalex.org/works/W4414624754.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1967394355","https://openalex.org/W1971707621","https://openalex.org/W2025058643","https://openalex.org/W2110417468","https://openalex.org/W2114888488","https://openalex.org/W2131581981","https://openalex.org/W2146764278","https://openalex.org/W2168103533","https://openalex.org/W2311607323","https://openalex.org/W2567080747","https://openalex.org/W2762638728","https://openalex.org/W2799040448","https://openalex.org/W2800679800","https://openalex.org/W2844602024","https://openalex.org/W2885079199","https://openalex.org/W2919115771","https://openalex.org/W2953522645","https://openalex.org/W2955214642","https://openalex.org/W3049002444","https://openalex.org/W3094409036","https://openalex.org/W3181414820","https://openalex.org/W3197647000","https://openalex.org/W3200776886","https://openalex.org/W3212461952","https://openalex.org/W4220681836","https://openalex.org/W4220941667","https://openalex.org/W4225513411","https://openalex.org/W4306353195","https://openalex.org/W4309674289","https://openalex.org/W4313452774","https://openalex.org/W4315607517","https://openalex.org/W4315641887","https://openalex.org/W4381051623","https://openalex.org/W4382501959","https://openalex.org/W4386777151","https://openalex.org/W4388155974","https://openalex.org/W4388185854","https://openalex.org/W4390618566","https://openalex.org/W4392359953","https://openalex.org/W4393931635","https://openalex.org/W4394874526","https://openalex.org/W4395703652","https://openalex.org/W4396974446","https://openalex.org/W4397004462","https://openalex.org/W4398161918","https://openalex.org/W4398203645","https://openalex.org/W4399716258","https://openalex.org/W4400955918","https://openalex.org/W4403099947","https://openalex.org/W4403925918","https://openalex.org/W4404283941","https://openalex.org/W4404480129","https://openalex.org/W4405079446","https://openalex.org/W4408293710","https://openalex.org/W4409277642","https://openalex.org/W4410092171"],"related_works":[],"abstract_inverted_index":{"The":[0],"emergence":[1],"of":[2,54,73,81,128,146],"artificial":[3],"intelligence":[4],"agents":[5,26],"powered":[6],"by":[7],"large":[8],"language":[9],"models":[10],"marks":[11],"a":[12,36,138],"transformative":[13],"shift":[14],"in":[15,84,141],"computational":[16],"biology.":[17],"In":[18,104],"this":[19],"new":[20,37],"paradigm,":[21],"autonomous,":[22],"adaptive,":[23],"and":[24,51,69,93,102,111,131,153],"intelligent":[25],"are":[27],"deployed":[28],"to":[29,35,65,99],"tackle":[30],"complex":[31],"biological":[32,74],"challenges,":[33],"leading":[34],"research":[38,152],"field":[39],"named":[40],"agentic":[41,55,60,82,116,135],"bioinformatics.":[42,56],"Here,":[43],"we":[44,77,106,133],"explore":[45],"the":[46,79,108,126,143],"core":[47],"principles,":[48],"evolving":[49],"methodologies,":[50],"diverse":[52],"applications":[53],"We":[57],"examine":[58],"how":[59],"bioinformatics":[61,136],"systems":[62],"work":[63],"synergistically":[64],"facilitate":[66],"data-driven":[67],"decision-making":[68],"enable":[70],"self-directed":[71],"exploration":[72],"datasets.":[75],"Furthermore,":[76],"highlight":[78],"integration":[80],"frameworks":[83],"key":[85,119],"areas":[86],"such":[87],"as":[88,137],"personalized":[89],"medicine,":[90],"drug":[91],"discovery,":[92],"synthetic":[94],"biology,":[95,148],"illustrating":[96],"their":[97],"potential":[98],"revolutionize":[100],"healthcare":[101],"biotechnology.":[103],"addition,":[105],"address":[107],"ethical,":[109],"technical,":[110],"scalability":[112],"challenges":[113,145],"associated":[114],"with":[115],"bioinformatics,":[117],"identifying":[118],"opportunities":[120],"for":[121],"future":[122],"advancements.":[123],"By":[124],"emphasizing":[125],"importance":[127],"interdisciplinary":[129],"collaboration":[130],"innovation,":[132],"envision":[134],"major":[139],"force":[140],"overcoming":[142],"grand":[144],"modern":[147],"ultimately":[149],"advancing":[150],"both":[151],"clinical":[154],"applications.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
