{"id":"https://openalex.org/W4414513339","doi":"https://doi.org/10.1093/bib/bbaf494","title":"Contrastive hypergraph collaborative filtering for transfer RNA\u2013disease association prediction","display_name":"Contrastive hypergraph collaborative filtering for transfer RNA\u2013disease association prediction","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414513339","doi":"https://doi.org/10.1093/bib/bbaf494","pmid":"https://pubmed.ncbi.nlm.nih.gov/40996145"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf494","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf494/64380561/bbaf494.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf494/64380561/bbaf494.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101180908","display_name":"Tianxiang Ouyang","orcid":"https://orcid.org/0009-0002-1951-7184"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tianxiang Ouyang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I48168531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052229178","display_name":"Yuanpeng Zhang","orcid":"https://orcid.org/0000-0003-1736-3425"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanpeng Zhang","raw_affiliation_strings":["School of Software, Xinjiang University , 666 Shengli Road, Tianshan District, Urumqi, Xinjiang 830046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Xinjiang University , 666 Shengli Road, Tianshan District, Urumqi, Xinjiang 830046 ,","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101825078","display_name":"Zhijian Huang","orcid":"https://orcid.org/0000-0003-4574-345X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhijian Huang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I48168531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113262237","display_name":"Lei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I48168531","display_name":"South University","ror":"https://ror.org/01rjfjt94","country_code":"US","type":"education","lineage":["https://openalex.org/I48168531"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Lei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , 932 Lushan South Road, Yuelu District, Changsha, Hunan 410083 ,","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I48168531"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5113262237"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I48168531"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15473083,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.9190000295639038},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5052000284194946},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4959999918937683},{"id":"https://openalex.org/keywords/collaborative-filtering","display_name":"Collaborative filtering","score":0.48190000653266907},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.4453999996185303},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.42660000920295715},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.39469999074935913},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.38119998574256897}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.9190000295639038},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.777899980545044},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5052000284194946},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4959999918937683},{"id":"https://openalex.org/C21569690","wikidata":"https://www.wikidata.org/wiki/Q94702","display_name":"Collaborative filtering","level":3,"score":0.48190000653266907},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44929999113082886},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.4453999996185303},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42989999055862427},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.42660000920295715},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.39469999074935913},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3869999945163727},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.38119998574256897},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36899998784065247},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.36880001425743103},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.35519999265670776},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3497999906539917},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.3434000015258789},{"id":"https://openalex.org/C60908668","wikidata":"https://www.wikidata.org/wiki/Q690207","display_name":"Perceptron","level":3,"score":0.3418999910354614},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.3393999934196472},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.33719998598098755},{"id":"https://openalex.org/C152671427","wikidata":"https://www.wikidata.org/wiki/Q10843505","display_name":"Non-negative matrix factorization","level":4,"score":0.303600013256073},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.27869999408721924},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.26809999346733093},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.2648000121116638}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf494","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf494/64380561/bbaf494.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40996145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40996145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11270241","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12461710","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12461710","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12461710/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf494","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf494/64380561/bbaf494.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2008773563","display_name":null,"funder_award_id":"62272490","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5299854802","display_name":null,"funder_award_id":"U23A20321","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G758037005","display_name":null,"funder_award_id":"U23A20321, 62272490","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7606515264","display_name":null,"funder_award_id":"2025JJ20062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8865982768","display_name":null,"funder_award_id":"2025JJ20062","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414513339.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W323797365","https://openalex.org/W1564500309","https://openalex.org/W1970695197","https://openalex.org/W1993599690","https://openalex.org/W2049424828","https://openalex.org/W2051409304","https://openalex.org/W2091338613","https://openalex.org/W2101999834","https://openalex.org/W2109574129","https://openalex.org/W2187089797","https://openalex.org/W2255955546","https://openalex.org/W2264399954","https://openalex.org/W2329901740","https://openalex.org/W2765950793","https://openalex.org/W2776616144","https://openalex.org/W2800385019","https://openalex.org/W2892880750","https://openalex.org/W2902501977","https://openalex.org/W2924349232","https://openalex.org/W2985331920","https://openalex.org/W2988089887","https://openalex.org/W3010127844","https://openalex.org/W3014435559","https://openalex.org/W3080501980","https://openalex.org/W3093996932","https://openalex.org/W3095602948","https://openalex.org/W3102629312","https://openalex.org/W3124983620","https://openalex.org/W3133557863","https://openalex.org/W3155403258","https://openalex.org/W3209465832","https://openalex.org/W4225777983","https://openalex.org/W4282914538","https://openalex.org/W4283695165","https://openalex.org/W4294811162","https://openalex.org/W4297733535","https://openalex.org/W4297891375","https://openalex.org/W4307440230","https://openalex.org/W4318054849","https://openalex.org/W4323974793","https://openalex.org/W4382239158","https://openalex.org/W4385331028","https://openalex.org/W4386509579","https://openalex.org/W4386649703","https://openalex.org/W4387026766","https://openalex.org/W4388821668","https://openalex.org/W4390344226","https://openalex.org/W4390706181","https://openalex.org/W4390991988","https://openalex.org/W4392594225","https://openalex.org/W4392627794","https://openalex.org/W4392975559","https://openalex.org/W4396954010","https://openalex.org/W4403663534","https://openalex.org/W4407681133","https://openalex.org/W4409445067"],"related_works":[],"abstract_inverted_index":{"Transfer":[0],"RNAs":[1],"(tRNAs)":[2],"play":[3],"critical":[4],"roles":[5],"in":[6,42,75,214],"the":[7,43,49,70,150,187,196],"process":[8],"of":[9,45,51,152,192,199],"protein":[10],"synthesis":[11],"by":[12,144],"decoding":[13],"messenger":[14],"RNA":[15],"codons":[16],"into":[17],"amino":[18],"acids,":[19],"which":[20],"is":[21],"essential":[22],"for":[23,31,156,163],"cellular":[24],"function":[25],"across":[26,204],"various":[27],"biological":[28],"pathways":[29],"and":[30,60,72,110,131,160,217,225],"maintaining":[32],"metabolic":[33],"homeostasis.":[34],"Available":[35],"evidence":[36],"implicates":[37],"that":[38,92,174],"tRNAs":[39],"are":[40,142,227],"involved":[41],"progression":[44],"diverse":[46],"diseases,":[47],"underscoring":[48],"importance":[50],"accurately":[52],"predicting":[53],"tRNA-disease":[54,220],"associations":[55,159],"to":[56,105,116,134,180],"understand":[57],"disease":[58],"mechanisms":[59],"support":[61],"precision":[62],"medicine.":[63],"However,":[64],"existing":[65,181],"methods":[66],"often":[67],"struggle":[68],"with":[69,97,113,183],"complexity":[71],"heterogeneity":[73],"inherent":[74],"these":[76,80],"associations.":[77,221],"To":[78],"address":[79],"challenges,":[81],"we":[82],"introduce":[83],"contrastive":[84,95,124],"hypergraph":[85,94,132],"collaborative":[86,98,146],"filtering":[87,147],"(CoHGCL),":[88],"a":[89,122,145],"prediction":[90],"framework":[91],"integrates":[93],"learning":[96,125],"filtering.":[99],"CoHGCL":[100,175],"employs":[101],"graph":[102,130],"attention":[103],"networks":[104],"capture":[106],"local":[107],"structural":[108],"features":[109],"random":[111],"walk":[112],"restart":[114],"algorithms":[115],"encode":[117],"global":[118],"topological":[119],"patterns.":[120],"Subsequently,":[121],"node-level":[123],"mechanism":[126],"alternates":[127],"between":[128],"standard":[129],"representations":[133,141],"enhance":[135],"multiview":[136],"feature":[137],"embeddings.":[138],"These":[139],"enriched":[140],"integrated":[143],"approach":[148],"through":[149],"utilization":[151],"generalized":[153],"matrix":[154],"factorization":[155],"modeling":[157],"linear":[158],"multilayer":[161],"perceptrons":[162],"capturing":[164],"nonlinear":[165],"interactions.":[166],"Extensive":[167],"experimental":[168],"results":[169],"on":[170],"five-fold":[171],"cross-validation":[172],"demonstrate":[173],"achieves":[176],"superior":[177],"performance":[178],"compared":[179],"methods,":[182],"an":[184],"area":[185,194],"under":[186,195],"receiver":[188],"operating":[189],"characteristic":[190],"curve":[191,198],"0.9623,":[193],"precision-recall":[197],"0.9430,":[200],"outperforming":[201],"all":[202,205],"baselines":[203],"metrics.":[206],"Furthermore,":[207],"case":[208],"studies":[209],"further":[210],"confirm":[211],"CoHGCL's":[212],"effectiveness":[213],"discovering":[215],"novel":[216],"biologically":[218],"meaningful":[219],"The":[222],"source":[223],"code":[224],"datasets":[226],"publicly":[228],"available":[229],"at":[230],"https://github.com/Ouyang-cmd/CoHGCL.":[231]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
