{"id":"https://openalex.org/W4414467752","doi":"https://doi.org/10.1093/bib/bbaf490","title":"DeCoST: unveiling cell type heterogeneity in spatial transcriptomics based on inter-domain alignment and Gaussian kernel conditional autoregressive","display_name":"DeCoST: unveiling cell type heterogeneity in spatial transcriptomics based on inter-domain alignment and Gaussian kernel conditional autoregressive","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414467752","doi":"https://doi.org/10.1093/bib/bbaf490","pmid":"https://pubmed.ncbi.nlm.nih.gov/40991330"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf490","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf490/64373130/bbaf490.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf490/64373130/bbaf490.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101879054","display_name":"Xinyang Guo","orcid":"https://orcid.org/0000-0001-5607-5704"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210141776","display_name":"China XD Group (China)","ror":"https://ror.org/04ceqst84","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210141776"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinyang Guo","raw_affiliation_strings":["School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,","institution_ids":["https://openalex.org/I149594827","https://openalex.org/I4210141776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042358680","display_name":"Zilin Li","orcid":"https://orcid.org/0000-0002-3816-7151"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210141776","display_name":"China XD Group (China)","ror":"https://ror.org/04ceqst84","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210141776"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilin Li","raw_affiliation_strings":["School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,","institution_ids":["https://openalex.org/I149594827","https://openalex.org/I4210141776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101562601","display_name":"Zhaoyang Huang","orcid":"https://orcid.org/0000-0002-9839-7020"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210141776","display_name":"China XD Group (China)","ror":"https://ror.org/04ceqst84","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210141776"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyang Huang","raw_affiliation_strings":["School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,","institution_ids":["https://openalex.org/I149594827","https://openalex.org/I4210141776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100420980","display_name":"Juan Li","orcid":"https://orcid.org/0000-0001-7175-2320"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]},{"id":"https://openalex.org/I4210158926","display_name":"Xijing Hospital","ror":"https://ror.org/05cqe9350","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158926"]},{"id":"https://openalex.org/I9916479","display_name":"Air Force Medical University","ror":"https://ror.org/00ms48f15","country_code":"CN","type":"education","lineage":["https://openalex.org/I9916479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Li","raw_affiliation_strings":["College of Life Sciences , Northwest University, No. 229 Taibai North Road, Beilin District, Xi\u2019an, Shaanxi 710069,","Department of Rehabilitation Medicine , Xijing Hospital, Fourth Military Medical University, No. 127 Changle West Road, Xincheng District, Xi\u2019an, Shaanxi 710032,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences , Northwest University, No. 229 Taibai North Road, Beilin District, Xi\u2019an, Shaanxi 710069,","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Department of Rehabilitation Medicine , Xijing Hospital, Fourth Military Medical University, No. 127 Changle West Road, Xincheng District, Xi\u2019an, Shaanxi 710032,","institution_ids":["https://openalex.org/I9916479","https://openalex.org/I4210158926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079060420","display_name":"Chenguang Zhao","orcid":"https://orcid.org/0000-0002-2619-5905"},"institutions":[{"id":"https://openalex.org/I4210158926","display_name":"Xijing Hospital","ror":"https://ror.org/05cqe9350","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158926"]},{"id":"https://openalex.org/I9916479","display_name":"Air Force Medical University","ror":"https://ror.org/00ms48f15","country_code":"CN","type":"education","lineage":["https://openalex.org/I9916479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenguang Zhao","raw_affiliation_strings":["Department of Rehabilitation Medicine , Xijing Hospital, Fourth Military Medical University, No. 127 Changle West Road, Xincheng District, Xi\u2019an, Shaanxi 710032,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rehabilitation Medicine , Xijing Hospital, Fourth Military Medical University, No. 127 Changle West Road, Xincheng District, Xi\u2019an, Shaanxi 710032,","institution_ids":["https://openalex.org/I9916479","https://openalex.org/I4210158926"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054977113","display_name":"Liang Yu","orcid":"https://orcid.org/0000-0002-8351-3332"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210141776","display_name":"China XD Group (China)","ror":"https://ror.org/04ceqst84","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210141776"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Yu","raw_affiliation_strings":["School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,"],"raw_orcid":"https://orcid.org/0000-0002-8351-3332","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology , Xidian University, No. 266, Xinglong Section of Xifeng Road, Chang\u2019an District, Xi\u2019an, Shaanxi 710126,","institution_ids":["https://openalex.org/I149594827","https://openalex.org/I4210141776"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101879054"],"corresponding_institution_ids":["https://openalex.org/I149594827","https://openalex.org/I4210141776"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.6255,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72032125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9553999900817871,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.7947999835014343},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.6001999974250793},{"id":"https://openalex.org/keywords/spatial-contextual-awareness","display_name":"Spatial contextual awareness","score":0.4982999861240387},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.48899999260902405},{"id":"https://openalex.org/keywords/autoregressive-model","display_name":"Autoregressive model","score":0.47839999198913574},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.44119998812675476},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.4268999993801117}],"concepts":[{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.7947999835014343},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6657999753952026},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.6001999974250793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5076000094413757},{"id":"https://openalex.org/C64754055","wikidata":"https://www.wikidata.org/wiki/Q7574053","display_name":"Spatial contextual awareness","level":2,"score":0.4982999861240387},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.48899999260902405},{"id":"https://openalex.org/C159877910","wikidata":"https://www.wikidata.org/wiki/Q2202883","display_name":"Autoregressive model","level":2,"score":0.47839999198913574},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.44119998812675476},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.4268999993801117},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4242999851703644},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.39489999413490295},{"id":"https://openalex.org/C158709400","wikidata":"https://www.wikidata.org/wiki/Q3578586","display_name":"Spatial ecology","level":2,"score":0.3158000111579895},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31540000438690186},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31279999017715454},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.3091999888420105},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.3000999987125397},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.28790000081062317},{"id":"https://openalex.org/C7218915","wikidata":"https://www.wikidata.org/wiki/Q1054475","display_name":"Gaussian function","level":3,"score":0.25519999861717224},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.251800000667572}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009830","descriptor_name":"Olfactory Bulb","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009830","descriptor_name":"Olfactory Bulb","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009830","descriptor_name":"Olfactory Bulb","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009830","descriptor_name":"Olfactory Bulb","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009830","descriptor_name":"Olfactory Bulb","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D010190","descriptor_name":"Pancreatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D021441","descriptor_name":"Carcinoma, Pancreatic Ductal","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf490","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf490/64373130/bbaf490.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40991330","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40991330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11267822","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12459264","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12459264","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12459264/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf490","pdf_url":"https://academic.oup.com/bib/article-pdf/26/5/bbaf490/64373130/bbaf490.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3409937746","display_name":null,"funder_award_id":"62272065","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3588362506","display_name":null,"funder_award_id":"62472344","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4377408675","display_name":null,"funder_award_id":"QTZX25071","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414467752.pdf","grobid_xml":"https://content.openalex.org/works/W4414467752.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W103634839","https://openalex.org/W1593532658","https://openalex.org/W1981856505","https://openalex.org/W2000752305","https://openalex.org/W2025806474","https://openalex.org/W2088973714","https://openalex.org/W2114220616","https://openalex.org/W2119578188","https://openalex.org/W2125865219","https://openalex.org/W2191006082","https://openalex.org/W2296260051","https://openalex.org/W2471536144","https://openalex.org/W2609871153","https://openalex.org/W2749550628","https://openalex.org/W2765266269","https://openalex.org/W2899224111","https://openalex.org/W2903487479","https://openalex.org/W2923300855","https://openalex.org/W2972445800","https://openalex.org/W2999977864","https://openalex.org/W3001833132","https://openalex.org/W3022836409","https://openalex.org/W3092450854","https://openalex.org/W3103218284","https://openalex.org/W3124439729","https://openalex.org/W3127422037","https://openalex.org/W3129476455","https://openalex.org/W3161009639","https://openalex.org/W3190759848","https://openalex.org/W3208940117","https://openalex.org/W4205817967","https://openalex.org/W4206199829","https://openalex.org/W4206804332","https://openalex.org/W4210643272","https://openalex.org/W4224218779","https://openalex.org/W4225272983","https://openalex.org/W4283573874","https://openalex.org/W4288359172","https://openalex.org/W4294631386","https://openalex.org/W4301341693","https://openalex.org/W4306404289","https://openalex.org/W4313561039","https://openalex.org/W4367311768","https://openalex.org/W4386699707","https://openalex.org/W4389526560","https://openalex.org/W4390731249","https://openalex.org/W4390946589","https://openalex.org/W4400645076","https://openalex.org/W4402604581","https://openalex.org/W4406628597","https://openalex.org/W4408737479","https://openalex.org/W4409237284"],"related_works":[],"abstract_inverted_index":{"Spatial":[0],"transcriptomics":[1],"(STs)":[2,55],"has":[3],"emerged":[4],"as":[5,123,125],"a":[6,66,88],"transformative":[7],"approach":[8],"to":[9,101,148,155],"elucidate":[10],"cellular":[11],"heterogeneity":[12],"and":[13,49,107,137,161,172,180],"spatial":[14,30,39,44,53,83,121,163],"organization":[15,171],"within":[16],"complex":[17,169],"tissue":[18,170],"microenvironments.":[19],"However,":[20],"the":[21,42,81,95,142],"analysis":[22],"of":[23,145,168],"ST":[24,108],"data":[25],"is":[26,46,76],"challenged":[27],"by":[28,59,86],"limited":[29],"resolution,":[31],"resulting":[32],"in":[33,52,177],"mixed":[34],"expression":[35],"profiles":[36],"at":[37],"each":[38],"location.":[40],"Moreover,":[41],"precious":[43],"information":[45,85],"rarely":[47],"exploited,":[48],"noise":[50],"issues":[51],"transcriptomes":[54],"are":[56],"often":[57],"overlooked":[58],"computational":[60,68],"deconvolution":[61,72,150],"methods.":[62],"In":[63],"this":[64],"study,":[65],"novel":[67],"framework":[69],"for":[70],"STs":[71],"(DeCoST),":[73],"called":[74],"DeCoST,":[75],"presented.":[77],"DeCoST":[78,146],"capitalizes":[79],"on":[80,116,129],"valuable":[82],"context":[84],"integrating":[87],"Gaussian":[89],"kernel-based":[90],"conditional":[91],"autoregressive":[92],"model.":[93],"Additionally,":[94],"method":[96],"employs":[97],"domain":[98],"adaptation":[99],"techniques":[100],"address":[102],"platform":[103],"effects":[104],"between":[105],"single-cell":[106],"data,":[109],"enabling":[110],"robust":[111],"cell":[112,159],"type":[113],"identification.":[114],"Evaluations":[115],"simulated":[117],"datasets":[118],"under":[119],"diverse":[120],"configurations,":[122],"well":[124],"real-world":[126],"case":[127],"studies":[128],"human":[130],"pancreatic":[131],"ductal":[132],"adenocarcinoma,":[133],"mouse":[134,138],"olfactory":[135],"bulb,":[136],"brain":[139],"samples,":[140],"demonstrate":[141],"superior":[143],"performance":[144],"compared":[147],"existing":[149],"approaches.":[151],"The":[152],"method's":[153],"ability":[154],"accurately":[156],"map":[157],"region-specific":[158],"types":[160],"uncover":[162],"interactions":[164],"advances":[165],"our":[166],"understanding":[167],"function,":[173],"with":[174],"broad":[175],"applications":[176],"disease":[178],"research":[179],"developmental":[181],"biology.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
