{"id":"https://openalex.org/W4414452988","doi":"https://doi.org/10.1093/bib/bbaf483","title":"Alignment-free unique molecular identifier clustering suppresses sequencing errors for accurate detection of low-frequency DNA variants","display_name":"Alignment-free unique molecular identifier clustering suppresses sequencing errors for accurate detection of low-frequency DNA variants","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414452988","doi":"https://doi.org/10.1093/bib/bbaf483","pmid":"https://pubmed.ncbi.nlm.nih.gov/40982469"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf483","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf483","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021104669","display_name":"Fei Yu","orcid":"https://orcid.org/0000-0001-6138-1490"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Yu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Haojie Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haojie Xiao","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113052064","display_name":"Dongyang Song","orcid":null},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongyang Song","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiao Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Yang","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shiyue Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiyue Huang","raw_affiliation_strings":["Chongqing Yangjiaping Middle School , Chongqing 400050 ,","Chongqing Yangjiaping Middle School, Chongqing 400050, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Yangjiaping Middle School , Chongqing 400050 ,","institution_ids":["https://openalex.org/I158842170"]},{"raw_affiliation_string":"Chongqing Yangjiaping Middle School, Chongqing 400050, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445261","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0002-7175-4649"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048591796","display_name":"Mingze Bai","orcid":"https://orcid.org/0000-0002-9782-2056"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingze Bai","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044053522","display_name":"Xiaoming Yao","orcid":null},"institutions":[{"id":"https://openalex.org/I3129305164","display_name":"La Consolacion University Philippines","ror":"https://ror.org/009sv4j63","country_code":"PH","type":"education","lineage":["https://openalex.org/I3129305164"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Xiaoming Yao","raw_affiliation_strings":["Caronos Inc. , Anji, Zhejiang 313300 ,","Caronos Inc., Anji, Zhejiang 313300, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Caronos Inc. , Anji, Zhejiang 313300 ,","institution_ids":["https://openalex.org/I3129305164"]},{"raw_affiliation_string":"Caronos Inc., Anji, Zhejiang 313300, China","institution_ids":["https://openalex.org/I3129305164"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072776409","display_name":"Kunxian Shu","orcid":"https://orcid.org/0000-0003-4487-2727"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kunxian Shu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":"https://orcid.org/0000-0003-4487-2727","affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101498650","display_name":"Dan Pu","orcid":"https://orcid.org/0000-0002-0156-898X"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Pu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China"],"raw_orcid":"https://orcid.org/0000-0002-0156-898X","affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, No. 2 Chongwen Road, Nan'an District, Chongqing 400065, China","institution_ids":["https://openalex.org/I10535382"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5021104669"],"corresponding_institution_ids":["https://openalex.org/I10535382"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.6707,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.73317521,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5870000123977661},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5105000138282776},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.4684999883174896},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42879998683929443},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4253000020980835},{"id":"https://openalex.org/keywords/consensus-sequence","display_name":"Consensus sequence","score":0.38830000162124634},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.3212999999523163},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.3206000030040741}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5870000123977661},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5845000147819519},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5778999924659729},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5105000138282776},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.4684999883174896},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42879998683929443},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4253000020980835},{"id":"https://openalex.org/C54985914","wikidata":"https://www.wikidata.org/wiki/Q1295754","display_name":"Consensus sequence","level":4,"score":0.38830000162124634},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.387800008058548},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3215999901294708},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.3212999999523163},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.3206000030040741},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.31769999861717224},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.31200000643730164},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3082999885082245},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.299699991941452},{"id":"https://openalex.org/C40969351","wikidata":"https://www.wikidata.org/wiki/Q3516228","display_name":"Word error rate","level":2,"score":0.2921000123023987},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.28040000796318054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2612000107765198},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.2606000006198883},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.26030001044273376}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf483","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40982469","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40982469","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11261622","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12452285","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12452285","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12452285/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf483","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4737017817","display_name":null,"funder_award_id":"CSTB2024NSCQ-KJFZMSX0036","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"}],"funders":[{"id":"https://openalex.org/F4320323172","display_name":"Natural Science Foundation of Chongqing","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2049161350","https://openalex.org/W2107356675","https://openalex.org/W2116699248","https://openalex.org/W2120096459","https://openalex.org/W2143197030","https://openalex.org/W2152241467","https://openalex.org/W2170747616","https://openalex.org/W2329906190","https://openalex.org/W2396849069","https://openalex.org/W2401404581","https://openalex.org/W2517311150","https://openalex.org/W2611802561","https://openalex.org/W2792407191","https://openalex.org/W2898449026","https://openalex.org/W2940391028","https://openalex.org/W2946766521","https://openalex.org/W2952109315","https://openalex.org/W2952344627","https://openalex.org/W2952746993","https://openalex.org/W2952901975","https://openalex.org/W2953354146","https://openalex.org/W2962649098","https://openalex.org/W2990870977","https://openalex.org/W2996575833","https://openalex.org/W2996805586","https://openalex.org/W3011084528","https://openalex.org/W3025364836","https://openalex.org/W3043927350","https://openalex.org/W3082037286","https://openalex.org/W3129128929","https://openalex.org/W3154855549","https://openalex.org/W3159298665","https://openalex.org/W3161666351","https://openalex.org/W3164117097","https://openalex.org/W3165358150","https://openalex.org/W4214778096","https://openalex.org/W4298111185","https://openalex.org/W4313701993","https://openalex.org/W4362677987","https://openalex.org/W4367294691","https://openalex.org/W4367556784","https://openalex.org/W4376867710","https://openalex.org/W4381470516","https://openalex.org/W4386019793","https://openalex.org/W4387033705","https://openalex.org/W4387127742","https://openalex.org/W4403228218","https://openalex.org/W4405447882"],"related_works":[],"abstract_inverted_index":{"Accurate":[0],"detection":[1,159,200],"of":[2,26,150,160,184],"low-frequency":[3],"DNA":[4],"variants":[5,161],"(below":[6],"1%)":[7],"is":[8,48],"essential":[9],"in":[10,117,187,218],"diverse":[11],"biological":[12],"and":[13,53,63,89,108,114,121,146,201,206,222],"clinical":[14,220],"contexts,":[15],"yet":[16],"remains":[17],"fundamentally":[18],"constrained":[19],"by":[20,40,50,54],"the":[21,134,148],"high":[22],"intrinsic":[23],"error":[24,136],"rates":[25],"next-generation":[27],"sequencing":[28,212],"technologies.":[29],"Although":[30],"unique":[31],"molecular":[32],"identifiers":[33],"(UMIs)":[34],"have":[35],"significantly":[36],"mitigated":[37],"these":[38,83],"errors":[39],"uniquely":[41],"indexing":[42],"original":[43],"template":[44],"molecules,":[45],"their":[46],"efficacy":[47],"compromised":[49],"UMI":[51,77,87],"collisions":[52],"artifacts":[55],"introduced":[56],"during":[57],"polymerase":[58],"chain":[59],"reaction":[60],"(PCR)":[61],"amplification":[62],"sequencing,":[64],"which":[65],"collectively":[66],"engender":[67],"false-positive":[68],"variant":[69,163,199],"calls.":[70],"Here,":[71],"we":[72],"present":[73],"AFUMIC,":[74],"an":[75,194],"alignment-free":[76],"clustering":[78,106],"framework":[79,209],"that":[80,213],"systematically":[81],"addresses":[82],"limitations":[84],"through":[85],"collision-resilient":[86],"grouping":[88],"a":[90,203],"consensus":[91,98,119,123],"quality":[92],"score":[93],"(CQS)-guided":[94],"strategy":[95],"for":[96,181,197,210],"high-fidelity":[97],"sequence":[99,120,124],"generation.":[100],"AFUMIC":[101,173,192],"reduces":[102],"singleton":[103],"families,":[104],"enhances":[105],"precision,":[107],"maximizes":[109],"data":[110],"retention,":[111],"yielding":[112],"7.27-fold":[113],"3.84-fold":[115],"increases":[116],"single-strand":[118],"duplex":[122],"output,":[125],"respectively,":[126],"compared":[127],"to":[128,142,155],"Du":[129],"Novo.":[130],"It":[131],"further":[132],"decreases":[133],"per-base":[135],"rate":[137],"from":[138,153],"$3.01":[139],"\\times":[140,144,170],"10^{-4}$":[141],"$2.10":[143],"10^{-5}$":[145],"raises":[147],"proportion":[149],"error-free":[151],"positions":[152],"45.27%":[154],"99.85%,":[156],"enabling":[157],"confident":[158],"at":[162],"allele":[164],"frequencies":[165],"as":[166,168],"low":[167],"$1.0":[169],"10^{-5}$.":[171],"Notably,":[172],"exhibits":[174],"superior":[175],"computational":[176],"efficiency,":[177],"rendering":[178],"it":[179],"well-suited":[180],"high-throughput":[182],"analysis":[183],"UMI-tagged":[185],"libraries":[186],"large-scale":[188,223],"genomic":[189,224],"studies.":[190],"Collectively,":[191],"represents":[193],"efficient":[195,208],"methodology":[196],"ultrasensitive":[198],"establishes":[202],"broadly":[204],"applicable":[205],"computationally":[207],"error-corrected":[211],"can":[214],"be":[215],"readily":[216],"deployed":[217],"both":[219],"diagnostics":[221],"research.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
