{"id":"https://openalex.org/W4414382311","doi":"https://doi.org/10.1093/bib/bbaf480","title":"BioWalk-MDA: a novel approach for large-scale predicting metabolite-drug associations based on multi layered biomedical knowledge graphs","display_name":"BioWalk-MDA: a novel approach for large-scale predicting metabolite-drug associations based on multi layered biomedical knowledge graphs","publication_year":2025,"publication_date":"2025-08-31","ids":{"openalex":"https://openalex.org/W4414382311","doi":"https://doi.org/10.1093/bib/bbaf480","pmid":"https://pubmed.ncbi.nlm.nih.gov/40975834"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf480","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf480","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102757387","display_name":"Xiaoliang Wu","orcid":"https://orcid.org/0009-0002-0052-6347"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoliang Wu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114053227","display_name":"Meitao Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meitao Wu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057540672","display_name":"Yi Yang","orcid":"https://orcid.org/0000-0002-3519-5472"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yetong Yang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101861442","display_name":"Shuo Jiang","orcid":"https://orcid.org/0009-0000-4149-6493"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuo Jiang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100357018","display_name":"Gen Li","orcid":"https://orcid.org/0000-0002-0733-2695"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gen Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035676180","display_name":"Yang\u2010Xin Fu","orcid":"https://orcid.org/0000-0001-8441-6617"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanghe Fu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhuoxin Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuoxin Liu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089159821","display_name":"Yingli Lv","orcid":"https://orcid.org/0009-0007-1290-1745"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yingli Lv","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101590381","display_name":"Hongbo Shi","orcid":"https://orcid.org/0000-0002-0538-3026"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongbo Shi","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China"],"raw_orcid":"https://orcid.org/0000-0002-0538-3026","affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081 ,","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, No. 157, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5089159821","https://openalex.org/A5101590381"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2508614,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9491999745368958,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.5777999758720398},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.48330000042915344},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.46459999680519104},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.4562000036239624},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.44839999079704285},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.4311999976634979},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.3799999952316284},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.3625999987125397},{"id":"https://openalex.org/keywords/area-under-curve","display_name":"Area under curve","score":0.35040000081062317}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6862000226974487},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.5777999758720398},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.48330000042915344},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.46459999680519104},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.4562000036239624},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.44839999079704285},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44749999046325684},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.4311999976634979},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4262999892234802},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.3799999952316284},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36970001459121704},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.3625999987125397},{"id":"https://openalex.org/C3020225094","wikidata":"https://www.wikidata.org/wiki/Q80091","display_name":"Area under curve","level":3,"score":0.35040000081062317},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.34940001368522644},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3452000021934509},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.3174999952316284},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.30399999022483826},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.2915000021457672},{"id":"https://openalex.org/C2994212657","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Cellular metabolism","level":3,"score":0.28369998931884766},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.28299999237060547},{"id":"https://openalex.org/C89311334","wikidata":"https://www.wikidata.org/wiki/Q1124842","display_name":"Drug metabolism","level":3,"score":0.2766000032424927},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.2754000127315521},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.26930001378059387},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.2563999891281128},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.25279998779296875},{"id":"https://openalex.org/C97320921","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug interaction","level":3,"score":0.25270000100135803},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.25049999356269836}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf480","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40975834","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40975834","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11259745","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12450351","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12450351","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12450351/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf480","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1992159714","https://openalex.org/W2119220491","https://openalex.org/W2128049108","https://openalex.org/W2140099276","https://openalex.org/W2151888365","https://openalex.org/W2154851992","https://openalex.org/W2158783944","https://openalex.org/W2408949693","https://openalex.org/W2517981151","https://openalex.org/W2583889943","https://openalex.org/W2606021389","https://openalex.org/W2753953057","https://openalex.org/W2769934873","https://openalex.org/W2784429314","https://openalex.org/W2883712452","https://openalex.org/W2896863696","https://openalex.org/W2903096015","https://openalex.org/W2950173838","https://openalex.org/W3000719530","https://openalex.org/W3004306282","https://openalex.org/W3088602465","https://openalex.org/W3136836039","https://openalex.org/W3151120687","https://openalex.org/W3169072967","https://openalex.org/W3184519053","https://openalex.org/W3197858765","https://openalex.org/W3214608846","https://openalex.org/W4206447491","https://openalex.org/W4282930057","https://openalex.org/W4294051939","https://openalex.org/W4307425304","https://openalex.org/W4307645443","https://openalex.org/W4308834893","https://openalex.org/W4319993301","https://openalex.org/W4378528867","https://openalex.org/W4380853828","https://openalex.org/W4383710873","https://openalex.org/W4385185769","https://openalex.org/W4386120341","https://openalex.org/W4386148351","https://openalex.org/W4388615774","https://openalex.org/W4390035122","https://openalex.org/W4391751615","https://openalex.org/W4394579395","https://openalex.org/W4401200661","https://openalex.org/W4401634318","https://openalex.org/W4404687179"],"related_works":[],"abstract_inverted_index":{"Metabolism":[0],"is":[1,27,214],"fundamental":[2],"to":[3,14,59,131,146,216],"sustaining":[4],"human":[5],"life,":[6],"with":[7,156],"changes":[8],"in":[9,185,198,228],"metabolite":[10,33],"levels":[11],"closely":[12],"related":[13],"the":[15,38,64,165,178,206],"occurrence":[16],"and":[17,25,48,63,74,91,110,112,118,127,138,174,200,208,212,226,231],"progression":[18],"of":[19,55,116,121,135,160,172,183,210],"diseases.":[20],"The":[21,95,151],"interaction":[22],"between":[23,88],"metabolites":[24,39,90,196],"drugs":[26,30,203],"intricate,":[28],"encompassing":[29],"can":[31,44],"modulate":[32],"concentrations,":[34],"as":[35,37,218],"well":[36],"generated":[40],"through":[41],"drug":[42,49,229],"metabolism":[43],"influence":[45],"pharmacological":[46],"toxicity":[47],"interactions.":[50],"Currently,":[51],"a":[52,80,140,219],"substantial":[53],"proportion":[54],"metabolite-drug":[56,136,149,224],"associations":[57],"remains":[58],"be":[60],"fully":[61,141],"elucidated,":[62],"data":[65],"from":[66],"individual":[67],"sources":[68],"are":[69],"often":[70],"characterized":[71],"by":[72,103],"incompleteness":[73],"noise.":[75],"Here,":[76],"we":[77],"present":[78],"BioWalk-MDA,":[79,211],"computational":[81],"framework":[82,96,152],"for":[83,222],"large-scale":[84],"predicting":[85],"novel":[86,148],"interactions":[87,225],"8354":[89],"11":[92],"570":[93],"drugs.":[94],"constructs":[97],"multilayered":[98],"biomedical":[99],"knowledge":[100],"graphs":[101,117],"(Multi-BiomedKGs)":[102],"integrating":[104],"biological":[105],"information":[106],"across":[107],"proteins,":[108],"microbes,":[109],"diseases,":[111],"incorporated":[113],"five":[114],"types":[115,120],"seven":[119],"associations.":[122,150],"It":[123],"employed":[124],"random":[125],"walk":[126],"heterogeneous":[128],"Skip-gram":[129],"model":[130],"extract":[132],"feature":[133],"vectors":[134],"pairs":[137],"utilized":[139],"connected":[142],"neural":[143],"network":[144],"(FCNN)":[145],"infer":[147],"demonstrated":[153,205],"exceptional":[154],"performance":[155],"an":[157,162,175],"average":[158],"accuracy":[159],"0.971,":[161],"area":[163,176],"under":[164,177],"receiver":[166],"operating":[167],"characteristic":[168],"curve":[169,180],"(AUROC)":[170],"value":[171,182],"0.995,":[173],"precision-recall":[179],"(AUPRC)":[181],"0.994":[184],"5-fold":[186],"cross-validation,":[187],"surpassing":[188],"other":[189],"similar":[190],"methods.":[191],"Case":[192],"studies":[193],"on":[194],"three":[195,201],"detectable":[197],"blood":[199],"cardiovascular":[202],"further":[204],"reliability":[207],"efficiency":[209],"it":[213],"anticipated":[215],"serve":[217],"valuable":[220],"tool":[221],"exploring":[223],"aiding":[227],"development":[230],"combination":[232],"strategies.":[233]},"counts_by_year":[],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
