{"id":"https://openalex.org/W4413972477","doi":"https://doi.org/10.1093/bib/bbaf438","title":"UnCOT-AD: Unpaired Cross-Omics Translation Enables Multi-Omics Integration for Alzheimer\u2019s Disease Prediction","display_name":"UnCOT-AD: Unpaired Cross-Omics Translation Enables Multi-Omics Integration for Alzheimer\u2019s Disease Prediction","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4413972477","doi":"https://doi.org/10.1093/bib/bbaf438","pmid":"https://pubmed.ncbi.nlm.nih.gov/40862516"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf438","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf438","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5095459944","display_name":"Abrar Rahman Abir","orcid":null},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]},{"id":"https://openalex.org/I4210144275","display_name":"Dhaka University of Engineering & Technology","ror":"https://ror.org/03qxvyy35","country_code":"BD","type":"education","lineage":["https://openalex.org/I4210144275"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Abrar Rahman Abir","raw_affiliation_strings":["Department of Computer Science and Engineering , Bangladesh University of Engineering and Technology, Dhaka-1000,","Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka-1000, Bangladesh"],"raw_orcid":"https://orcid.org/0009-0005-5314-3886","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering , Bangladesh University of Engineering and Technology, Dhaka-1000,","institution_ids":["https://openalex.org/I183697816","https://openalex.org/I4210144275"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka-1000, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099380961","display_name":"Sajib Acharjee Dip","orcid":"https://orcid.org/0009-0007-0959-2638"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sajib Acharjee Dip","raw_affiliation_strings":["Department of Computer Science , Virginia Polytechnic Institute and State University, Blacksburg, VA 24061,","Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Virginia Polytechnic Institute and State University, Blacksburg, VA 24061,","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100741572","display_name":"Liqing Zhang","orcid":"https://orcid.org/0000-0002-5122-3664"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liqing Zhang","raw_affiliation_strings":["Department of Computer Science , Virginia Polytechnic Institute and State University, Blacksburg, VA 24061,","Fralin Biomedical Research Institute at VTC: Cancer Research Center , Virginia Polytechnic Institute and State University, Washington, DC 24016,","Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States","Fralin Biomedical Research Institute at VTC: Cancer Research Center, Virginia Polytechnic Institute and State University, Washington, DC 24016, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Virginia Polytechnic Institute and State University, Blacksburg, VA 24061,","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Fralin Biomedical Research Institute at VTC: Cancer Research Center , Virginia Polytechnic Institute and State University, Washington, DC 24016,","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, United States","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Fralin Biomedical Research Institute at VTC: Cancer Research Center, Virginia Polytechnic Institute and State University, Washington, DC 24016, United States","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.1969,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.88198976,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7472800016403198},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.5395672917366028},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45741599798202515},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45051613450050354},{"id":"https://openalex.org/keywords/alzheimers-disease","display_name":"Alzheimer's disease","score":0.4500636160373688},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.39554545283317566},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32526329159736633},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24828580021858215},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20495706796646118},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10894191265106201},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06309190392494202}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7472800016403198},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.5395672917366028},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45741599798202515},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45051613450050354},{"id":"https://openalex.org/C502032728","wikidata":"https://www.wikidata.org/wiki/Q11081","display_name":"Alzheimer's disease","level":3,"score":0.4500636160373688},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.39554545283317566},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32526329159736633},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24828580021858215},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20495706796646118},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10894191265106201},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06309190392494202},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf438","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40862516","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40862516","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11190258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12381766","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf438","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf438","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1081414229","display_name":null,"funder_award_id":"#2344169","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1484127158","https://openalex.org/W1967823816","https://openalex.org/W2033105784","https://openalex.org/W2052742260","https://openalex.org/W2058723245","https://openalex.org/W2111219940","https://openalex.org/W2122320288","https://openalex.org/W2571360328","https://openalex.org/W2614799965","https://openalex.org/W2789414284","https://openalex.org/W2798054687","https://openalex.org/W2807346720","https://openalex.org/W2942678593","https://openalex.org/W2968912020","https://openalex.org/W2992781369","https://openalex.org/W2999309192","https://openalex.org/W3043340891","https://openalex.org/W3044030235","https://openalex.org/W3086157479","https://openalex.org/W3096674342","https://openalex.org/W3118773559","https://openalex.org/W3134747685","https://openalex.org/W3144696998","https://openalex.org/W3184874229","https://openalex.org/W4205381065","https://openalex.org/W4210245046","https://openalex.org/W4210546025","https://openalex.org/W4220763302","https://openalex.org/W4285175832","https://openalex.org/W4293045328","https://openalex.org/W4307912059","https://openalex.org/W4320487111","https://openalex.org/W4323317524","https://openalex.org/W4323318599","https://openalex.org/W4367626026","https://openalex.org/W4376630140","https://openalex.org/W4387820986","https://openalex.org/W4394998571","https://openalex.org/W4400263823","https://openalex.org/W4401503476","https://openalex.org/W4404234503","https://openalex.org/W4404356565","https://openalex.org/W4405481134"],"related_works":["https://openalex.org/W177137871","https://openalex.org/W4292302930","https://openalex.org/W4386960635","https://openalex.org/W2594649246","https://openalex.org/W2924366642","https://openalex.org/W3184567430","https://openalex.org/W4286491824","https://openalex.org/W2955498781","https://openalex.org/W4399390205","https://openalex.org/W3195112886"],"abstract_inverted_index":{"Alzheimer's":[0],"Disease":[1],"(AD)":[2],"is":[3,237],"a":[4,9,105,140],"progressive":[5],"neurodegenerative":[6],"disorder,":[7],"posing":[8],"growing":[10],"public":[11],"health":[12],"challenge.":[13],"Traditional":[14],"machine":[15],"learning":[16,108,171],"models":[17,67],"for":[18,110,118],"AD":[19,65,119,200,210],"prediction":[20,66,201,211],"have":[21,49],"relied":[22],"on":[23,69,130,195],"single":[24],"omics":[25,61,71,75,132,151,162,215,219],"data":[26],"or":[27],"phenotypic":[28],"assessments,":[29],"limiting":[30],"their":[31],"ability":[32],"to":[33,56,88,145,157,172,181],"capture":[34,173],"the":[35,57,83,124,160,174,183],"disease's":[36],"molecular":[37],"complexity":[38],"and":[39,93,139,188,199,227,233],"resulting":[40],"in":[41,46,178,231],"poor":[42],"performance.":[43],"Recent":[44],"advances":[45],"high-throughput":[47],"multi-omics":[48,64,116,208],"provided":[50],"deeper":[51],"biological":[52,85],"insights.":[53],"However,":[54],"due":[55],"scarcity":[58],"of":[59],"paired":[60],"datasets,":[62,133],"existing":[63],"rely":[68],"unpaired":[70,131],"data,":[72],"where":[73],"different":[74],"profiles":[76,163,216,220],"are":[77,164],"combined":[78],"without":[79],"being":[80],"derived":[81],"from":[82],"same":[84],"sample,":[86],"leading":[87],"biologically":[89,165,189],"less":[90,95],"meaningful":[91],"pairings":[92],"causing":[94],"accurate":[96,147,187],"predictions.":[97],"To":[98],"address":[99],"these":[100],"issues,":[101],"we":[102,168],"propose":[103],"UnCOT-AD,":[104],"novel":[106,141],"deep":[107],"framework":[109],"Unpaired":[111],"Cross-Omics":[112],"Translation":[113],"enabling":[114],"effective":[115],"integration":[117],"prediction.":[120],"Our":[121],"method":[122],"introduces":[123],"first-ever":[125],"cross-omics":[126,184,197,224],"translation":[127,149,185,198,225],"model":[128],"trained":[129],"using":[134],"two":[135],"coupled":[136],"Variational":[137],"Autoencoders":[138],"cycle":[142],"consistency":[143],"mechanism":[144],"ensure":[146,158],"bidirectional":[148],"between":[150],"types.":[152],"We":[153,191],"integrate":[154],"adversarial":[155],"training":[156],"that":[159,205],"generated":[161,221],"realistic.":[166],"Moreover,":[167],"employ":[169],"contrastive":[170],"disease":[175],"specific":[176],"patterns":[177],"latent":[179],"space":[180],"make":[182],"more":[186],"relevant.":[190],"rigorously":[192],"validate":[193],"UnCOT-AD":[194,206],"both":[196],"tasks.":[202],"Results":[203],"show":[204],"empowers":[207],"based":[209],"by":[212,222],"combining":[213],"real":[214],"with":[217],"corresponding":[218],"our":[223],"module":[226],"achieves":[228],"state-of-the-art":[229],"performance":[230],"accuracy":[232],"robustness.":[234],"Source":[235],"code":[236],"available":[238],"at":[239],"https://github.com/abrarrahmanabir/UnCOT-AD.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}
