{"id":"https://openalex.org/W4413743347","doi":"https://doi.org/10.1093/bib/bbaf436","title":"MULoc-target: Targeting peptide classification and detection using a protein language model","display_name":"MULoc-target: Targeting peptide classification and detection using a protein language model","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4413743347","doi":"https://doi.org/10.1093/bib/bbaf436","pmid":"https://pubmed.ncbi.nlm.nih.gov/40862517"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf436","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf436/64143059/bbaf436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf436/64143059/bbaf436.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112452050","display_name":"Yuexu Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuexu Jiang","raw_affiliation_strings":["Department of Chemical and Materials Engineering, University of Kentucky , 177, 512 Administration Dr F. Paul Anderson Tower, Lexington, KY 40506 ,","Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Materials Engineering, University of Kentucky , 177, 512 Administration Dr F. Paul Anderson Tower, Lexington, KY 40506 ,","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003943520","display_name":"Duolin Wang","orcid":"https://orcid.org/0000-0003-1649-460X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duolin Wang","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103082007","display_name":"Shuai Zeng","orcid":"https://orcid.org/0000-0001-7632-427X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuai Zeng","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100616614","display_name":"Yichuan Zhang","orcid":"https://orcid.org/0009-0009-2259-0017"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yichuan Zhang","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068555557","display_name":"Lei Jiang","orcid":"https://orcid.org/0009-0007-1000-5752"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Jiang","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021973112","display_name":"Mahdi Pourmirzaei","orcid":"https://orcid.org/0000-0003-4621-0372"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahdi Pourmirzaei","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047946195","display_name":"Negin Manshour","orcid":"https://orcid.org/0009-0005-5552-6792"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Negin Manshour","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076603704","display_name":"Farzaneh Esmaili","orcid":"https://orcid.org/0000-0002-0002-7305"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farzaneh Esmaili","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090720315","display_name":"Weinan Zhang","orcid":"https://orcid.org/0000-0002-0127-2425"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weinan Zhang","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064028015","display_name":"Ian Max M\u00f8ller","orcid":"https://orcid.org/0000-0002-7919-7787"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Ian M M\u00f8ller","raw_affiliation_strings":["Department of Molecular Biology and Genetics, Aarhus University, Fors\u00f8gsvej 1 , Slagelse DK-4200 ,"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Genetics, Aarhus University, Fors\u00f8gsvej 1 , Slagelse DK-4200 ,","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri , 1201 Rollins St, Columbia, MO 65211 ,","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5112452050"],"corresponding_institution_ids":["https://openalex.org/I143302722","https://openalex.org/I76835614"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8425,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.76601514,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5606802105903625},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5388275384902954},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4703044295310974},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3871527910232544},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3495739698410034},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3080371618270874},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16330987215042114},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1494668424129486}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5606802105903625},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5388275384902954},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4703044295310974},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3871527910232544},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3495739698410034},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3080371618270874},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16330987215042114},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1494668424129486}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbaf436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf436","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf436/64143059/bbaf436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40862517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40862517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/2600a798-fc69-4441-b303-f3744f93b42d","is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/2600a798-fc69-4441-b303-f3744f93b42d","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Jiang, Y, Wang, D, Zeng, S, Zhang, Y, Jiang, L, Pourmirzaei, M, Manshour, N, Esmaili, F, Zhang, W, M\u00f8ller, I M & Xu, D 2025, 'MULoc-target : Targeting peptide classification and detection using a protein language model', Briefings in bioinformatics, vol. 26, no. 4, bbaf436. https://doi.org/10.1093/bib/bbaf436","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:11265797","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12454934","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12454934","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12454934/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf436","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf436/64143059/bbaf436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2568379775","display_name":null,"funder_award_id":"GM126985","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4222996792","display_name":"A deep learning framework for high-definition prediction and interpretation of protein localization","funder_award_id":"2145226","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7058772554","display_name":null,"funder_award_id":"DBI-2145226","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7975266290","display_name":null,"funder_award_id":"R35-GM126985","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309568","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413743347.pdf","grobid_xml":"https://content.openalex.org/works/W4413743347.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1582717600","https://openalex.org/W1851584592","https://openalex.org/W1912159341","https://openalex.org/W1971961101","https://openalex.org/W1986045651","https://openalex.org/W1990105977","https://openalex.org/W1992613346","https://openalex.org/W2003439649","https://openalex.org/W2015292449","https://openalex.org/W2017449280","https://openalex.org/W2039168518","https://openalex.org/W2050284387","https://openalex.org/W2051514994","https://openalex.org/W2110483430","https://openalex.org/W2119957718","https://openalex.org/W2123402141","https://openalex.org/W2129948021","https://openalex.org/W2146923243","https://openalex.org/W2150992807","https://openalex.org/W2152482858","https://openalex.org/W2244640457","https://openalex.org/W2289232069","https://openalex.org/W2741175162","https://openalex.org/W2977368063","https://openalex.org/W2997320264","https://openalex.org/W3129049721","https://openalex.org/W3136918052","https://openalex.org/W3177500196","https://openalex.org/W4205192056","https://openalex.org/W4206950245","https://openalex.org/W4225264859","https://openalex.org/W4327550249","https://openalex.org/W4376503900","https://openalex.org/W4385622695","https://openalex.org/W4385970959","https://openalex.org/W4396721167","https://openalex.org/W4406440058","https://openalex.org/W4407199666"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Protein":[0],"targeting,":[1],"often":[2],"guided":[3],"by":[4],"targeting":[5,31,53,74,103,123],"peptides,":[6],"is":[7,143,162],"a":[8,44,66,151],"critical":[9],"biological":[10,132],"process":[11],"that":[12,92],"directs":[13],"proteins":[14],"to":[15,35,49],"their":[16,118],"specific":[17],"cellular":[18,22],"destinations,":[19],"ensuring":[20],"proper":[21],"functionality":[23],"and":[24,28,51,62,85,101,120,158],"organization.":[25],"Accurate":[26],"classification":[27],"detection":[29],"of":[30,72,110],"peptides":[32,54,75],"are":[33],"fundamental":[34],"understanding":[36],"protein":[37],"sorting":[38],"mechanisms.":[39,124],"This":[40],"study":[41],"introduces":[42],"MULoc-Target,":[43],"novel":[45],"deep-learning":[46],"method":[47],"designed":[48],"detect":[50],"classify":[52],"in":[55,99],"eukaryotic":[56,73],"proteins.":[57],"To":[58],"support":[59],"its":[60],"development":[61],"evaluation,":[63],"we":[64],"curated":[65,78],"benchmark":[67],"dataset":[68,84],"comprising":[69],"eight":[70],"types":[71],"with":[76,130],"manually":[77],"annotations.":[79],"Comprehensive":[80],"evaluations":[81],"on":[82],"this":[83],"external":[86],"datasets":[87],"from":[88],"the":[89,108,121,159],"literature":[90],"demonstrate":[91],"MULoc-Target":[93,142],"achieves":[94],"state-of-the-art":[95],"or":[96],"competitive":[97],"performance":[98],"detecting":[100],"classifying":[102],"peptides.":[104],"Additionally,":[105],"it":[106],"enables":[107],"extraction":[109],"enriched":[111],"motif":[112],"patterns,":[113],"offering":[114],"valuable":[115],"insights":[116],"into":[117,145],"properties":[119],"underlying":[122],"The":[125],"identified":[126],"motifs":[127],"align":[128],"closely":[129],"established":[131],"features,":[133],"further":[134],"validating":[135],"MULoc-Target's":[136],"capabilities.":[137],"A":[138],"web":[139],"server":[140],"for":[141],"integrated":[144],"our":[146],"MULocDeep":[147],"localization":[148],"suite":[149],"as":[150],"new":[152],"toolkit,":[153],"publicly":[154],"accessible":[155],"at":[156,164],"https://mu-loc.org/MULoc-Target,":[157],"inference":[160],"code":[161],"available":[163],"https://github.com/yuexujiang/MULoc-Target.":[165]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
