{"id":"https://openalex.org/W4413355637","doi":"https://doi.org/10.1093/bib/bbaf428","title":"HiCat: a semi-supervised approach for cell type annotation","display_name":"HiCat: a semi-supervised approach for cell type annotation","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4413355637","doi":"https://doi.org/10.1093/bib/bbaf428","pmid":"https://pubmed.ncbi.nlm.nih.gov/40833274"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf428","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf428/64089052/bbaf428.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf428/64089052/bbaf428.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091912189","display_name":"Chang Bi","orcid":"https://orcid.org/0009-0003-2660-2018"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chang Bi","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,"],"raw_orcid":"https://orcid.org/0009-0003-2660-2018","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085591477","display_name":"Kailun Bai","orcid":"https://orcid.org/0009-0002-4996-8875"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kailun Bai","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,"],"raw_orcid":"https://orcid.org/0009-0002-4996-8875","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090281546","display_name":"Xuekui Zhang","orcid":"https://orcid.org/0000-0003-4728-2343"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Xuekui Zhang","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,"],"raw_orcid":"https://orcid.org/0000-0003-4728-2343","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road, Victoria, BC V8P 5C2 ,","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I212119943"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.3811,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.95027741,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.804172933101654},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7321050763130188},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6360535621643066},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6220847368240356},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.5923495292663574},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5862362384796143},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5707582235336304},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5083145499229431},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.507944643497467},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.504273533821106},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.4686153531074524},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.46454691886901855},{"id":"https://openalex.org/keywords/unsupervised-learning","display_name":"Unsupervised learning","score":0.443244069814682},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40374064445495605},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.387332946062088},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.08443957567214966}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.804172933101654},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7321050763130188},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6360535621643066},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6220847368240356},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.5923495292663574},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5862362384796143},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5707582235336304},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5083145499229431},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.507944643497467},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.504273533821106},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.4686153531074524},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.46454691886901855},{"id":"https://openalex.org/C8038995","wikidata":"https://www.wikidata.org/wiki/Q1152135","display_name":"Unsupervised learning","level":2,"score":0.443244069814682},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40374064445495605},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.387332946062088},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.08443957567214966},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf428","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf428/64089052/bbaf428.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40833274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40833274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12365967","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12365967","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf428","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf428/64089052/bbaf428.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1787962359","display_name":null,"funder_award_id":"CRC-2021-00232","funder_id":"https://openalex.org/F4320320994","funder_display_name":"Canada Research Chairs"},{"id":"https://openalex.org/G6109004750","display_name":null,"funder_award_id":"SCH-2022-2553","funder_id":"https://openalex.org/F4320319965","funder_display_name":"Michael Smith Health Research BC"}],"funders":[{"id":"https://openalex.org/F4320314005","display_name":"Western Canada Research Grid","ror":null},{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320331257","display_name":"Alliance de recherche num\u00e9rique du Canada","ror":"https://ror.org/010r6td27"},{"id":"https://openalex.org/F4320334601","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413355637.pdf","grobid_xml":"https://content.openalex.org/works/W4413355637.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W66443818","https://openalex.org/W2010653277","https://openalex.org/W2018173663","https://openalex.org/W2084825289","https://openalex.org/W2087401044","https://openalex.org/W2122111042","https://openalex.org/W2231058499","https://openalex.org/W2463988862","https://openalex.org/W2523369352","https://openalex.org/W2523419694","https://openalex.org/W2523620612","https://openalex.org/W2526262591","https://openalex.org/W2551194178","https://openalex.org/W2586421092","https://openalex.org/W2772089072","https://openalex.org/W2794521141","https://openalex.org/W2796170779","https://openalex.org/W2884197618","https://openalex.org/W2889326414","https://openalex.org/W2894687190","https://openalex.org/W2897346235","https://openalex.org/W2899190218","https://openalex.org/W2907514116","https://openalex.org/W2911964244","https://openalex.org/W2942380588","https://openalex.org/W2949177718","https://openalex.org/W2951737297","https://openalex.org/W2951914955","https://openalex.org/W2959295202","https://openalex.org/W2964643116","https://openalex.org/W2966569571","https://openalex.org/W2971398276","https://openalex.org/W2977083349","https://openalex.org/W2984472267","https://openalex.org/W2995410603","https://openalex.org/W3002417351","https://openalex.org/W3006566541","https://openalex.org/W3014185549","https://openalex.org/W3015184839","https://openalex.org/W3028505928","https://openalex.org/W3036137852","https://openalex.org/W3037558964","https://openalex.org/W3087303443","https://openalex.org/W3101697142","https://openalex.org/W3121168830","https://openalex.org/W3124814274","https://openalex.org/W3127539648","https://openalex.org/W3132715010","https://openalex.org/W3178911446","https://openalex.org/W3198628780","https://openalex.org/W3200266566","https://openalex.org/W3211595762","https://openalex.org/W4206296072","https://openalex.org/W4211255280","https://openalex.org/W4220837089","https://openalex.org/W4233637541","https://openalex.org/W4243363028","https://openalex.org/W4285745387","https://openalex.org/W4297243391","https://openalex.org/W4301391557","https://openalex.org/W4324045291","https://openalex.org/W4376612287","https://openalex.org/W4378212544","https://openalex.org/W4392377529","https://openalex.org/W4392393188","https://openalex.org/W4392913648","https://openalex.org/W4394892745","https://openalex.org/W4412599555","https://openalex.org/W6637131181"],"related_works":["https://openalex.org/W4390806283","https://openalex.org/W3148060700","https://openalex.org/W3080681248","https://openalex.org/W4376646226","https://openalex.org/W3047177827","https://openalex.org/W4287685660","https://openalex.org/W2057778272","https://openalex.org/W4319302697","https://openalex.org/W2986085304","https://openalex.org/W2163389298"],"abstract_inverted_index":{"Existing":[0],"cell":[1,16,39,82,121,179,192,197,216,225,252],"type":[2,122,193,198,232],"annotation":[3,78],"methods":[4],"face":[5],"significant":[6],"hurdles:":[7],"supervised":[8,144,151],"approaches":[9],"often":[10],"fail":[11],"to":[12,54,75,156],"differentiate":[13],"between":[14,150],"novel":[15,91,120,196,215,231],"types":[17,83],"not":[18],"present":[19],"in":[20,33,189,210,250],"reference":[21,68,141],"data,":[22],"while":[23],"unsupervised":[24,116,154],"techniques":[25],"can":[26],"suffer":[27],"from":[28,128],"cluster":[29],"impurity":[30],"and":[31,70,84,88,102,146,153,171,195,212,230,240],"difficulties":[32],"robustly":[34],"distinguishing":[35,213],"multiple":[36,214],"distinct":[37],"unknown":[38],"populations.":[40],"This":[41],"critical":[42],"gap":[43],"motivated":[44],"the":[45,86,182],"development":[46],"of":[47,90,181],"HiCat,":[48],"a":[49,60,95,104,132,138,173,177,220,238],"semi-supervised":[50,61],"pipeline":[51,62],"specifically":[52],"designed":[53],"overcome":[55],"these":[56],"limitations.":[57],"HiCat":[58,93,185,203,218],"is":[59],"that":[63],"integrates":[64],"both":[65,190],"approaches,":[66],"leveraging":[67],"(labeled)":[69],"query":[71],"(unlabeled)":[72],"genomic":[73,169],"data":[74,142],"simultaneously":[76],"enhance":[77],"accuracy":[79,229],"for":[80,111,118,143,160,223,243],"known":[81,191],"improve":[85],"discovery":[87],"differentiation":[89],"ones.":[92],"follows":[94],"structured":[96],"pipeline:":[97],"(1)":[98],"removing":[99],"batch":[100],"effects":[101],"generate":[103],"low-dimensional":[105],"embedding;":[106],"(2)":[107],"nonlinear":[108],"dimensionality":[109],"reduction":[110],"capturing":[112],"key":[113,248],"patterns;":[114],"(3)":[115],"clustering":[117],"proposing":[119],"candidates;":[123],"(4)":[124],"merging":[125],"multi-resolution":[126],"features":[127],"previous":[129],"steps":[130],"into":[131],"condensed":[133],"feature":[134],"space;":[135],"(5)":[136],"training":[137],"classifier":[139],"on":[140,176],"annotation;":[145],"(6)":[147],"resolving":[148],"inconsistencies":[149],"predictions":[152],"clusters":[155],"finalize":[157],"annotations,":[158],"particularly":[159],"unseen":[161],"types.":[162,217],"Performance":[163],"was":[164],"evaluated":[165],"across":[166],"10":[167],"public":[168],"datasets":[170],"perform":[172],"case":[174],"study":[175],"molecular":[178],"atlas":[180],"human":[183],"lung.":[184],"demonstrated":[186],"superior":[187],"performance":[188],"classification":[194,228],"identification.":[199,233],"In":[200,234],"benchmark":[201],"evaluations,":[202],"consistently":[204],"outperformed":[205],"existing":[206],"methods,":[207],"critically":[208],"excelling":[209],"identifying":[211],"presents":[219],"robust":[221],"framework":[222],"scRNA-seq":[224],"annotation,":[226],"improving":[227],"addition,":[235],"it":[236],"provides":[237],"scalable":[239],"transferable":[241],"solution":[242],"biomedical":[244],"research,":[245],"directly":[246],"addressing":[247],"challenges":[249],"automated":[251],"annotation.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
