{"id":"https://openalex.org/W4413374938","doi":"https://doi.org/10.1093/bib/bbaf424","title":"STINGAllo: a web server for high-throughput prediction of allosteric site-forming residues using internal protein nanoenvironment descriptors","display_name":"STINGAllo: a web server for high-throughput prediction of allosteric site-forming residues using internal protein nanoenvironment descriptors","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4413374938","doi":"https://doi.org/10.1093/bib/bbaf424","pmid":"https://pubmed.ncbi.nlm.nih.gov/40838783"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf424","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf424","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084033716","display_name":"Folorunsho Bright Omage","orcid":"https://orcid.org/0000-0002-9750-5034"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]},{"id":"https://openalex.org/I4210113996","display_name":"Centro Universit\u00e1rio da Cidade","ror":"https://ror.org/032bg8m67","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210113996"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Folorunsho Bright Omage","raw_affiliation_strings":["Biological Chemistry Laboratory , Department of Organic Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","Institute of Chemistry, University of Campinas (UNICAMP) , Department of Organic Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,"],"raw_orcid":"https://orcid.org/0000-0002-9750-5034","affiliations":[{"raw_affiliation_string":"Biological Chemistry Laboratory , Department of Organic Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","institution_ids":["https://openalex.org/I4210113996"]},{"raw_affiliation_string":"Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"Institute of Chemistry, University of Campinas (UNICAMP) , Department of Organic Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069094361","display_name":"Jos\u00e9 Augusto Salim","orcid":"https://orcid.org/0000-0002-8675-7068"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Augusto Salim","raw_affiliation_strings":["Department of Plant Biology, Institute of Biology, University of Campinas (UNICAMP) , Rua Monteiro Lobato, 255 \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-862 ,"],"raw_orcid":"https://orcid.org/0000-0002-8675-7068","affiliations":[{"raw_affiliation_string":"Department of Plant Biology, Institute of Biology, University of Campinas (UNICAMP) , Rua Monteiro Lobato, 255 \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-862 ,","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001859905","display_name":"Ivan Mazoni","orcid":"https://orcid.org/0000-0002-3763-1071"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ivan Mazoni","raw_affiliation_strings":["Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,"],"raw_orcid":"https://orcid.org/0000-0002-3763-1071","affiliations":[{"raw_affiliation_string":"Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012373443","display_name":"I. H. Yano","orcid":"https://orcid.org/0000-0003-2698-6309"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"In\u00e1cio Henrique Yano","raw_affiliation_strings":["Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,"],"raw_orcid":"https://orcid.org/0000-0003-2698-6309","affiliations":[{"raw_affiliation_string":"Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083608620","display_name":"Jorge Enrique Hern\u00e1ndez Gonz\u00e1lez","orcid":"https://orcid.org/0000-0002-4770-8677"},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jorge Enrique Hern\u00e1ndez Gonz\u00e1lez","raw_affiliation_strings":["Multiuser Center for Biomolecular Innovation, Institute of Biosciences, Humanities and Exact Sciences, S\u00e3o Paulo State University (UNESP) , Rua Crist\u00f3v\u00e3o Colombo, 2265, Jardim Nazareth, S\u00e3o Jos\u00e9 do Rio Preto, SP, CEP 15054-000 ,"],"raw_orcid":"https://orcid.org/0000-0002-4770-8677","affiliations":[{"raw_affiliation_string":"Multiuser Center for Biomolecular Innovation, Institute of Biosciences, Humanities and Exact Sciences, S\u00e3o Paulo State University (UNESP) , Rua Crist\u00f3v\u00e3o Colombo, 2265, Jardim Nazareth, S\u00e3o Jos\u00e9 do Rio Preto, SP, CEP 15054-000 ,","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038033255","display_name":"P. F. Giachetto","orcid":"https://orcid.org/0000-0002-9991-6566"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Poliana Fernanda Giachetto","raw_affiliation_strings":["Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,"],"raw_orcid":"https://orcid.org/0000-0002-9991-6566","affiliations":[{"raw_affiliation_string":"Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020866353","display_name":"Ljubica Tasi\u0107","orcid":"https://orcid.org/0000-0003-2930-7332"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ljubica Tasic","raw_affiliation_strings":["Biological Chemistry Laboratory , Department of Organic Chemistry, Institute of Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","University of Campinas (UNICAMP) , Department of Organic Chemistry, Institute of Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,"],"raw_orcid":"https://orcid.org/0000-0003-2930-7332","affiliations":[{"raw_affiliation_string":"Biological Chemistry Laboratory , Department of Organic Chemistry, Institute of Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"University of Campinas (UNICAMP) , Department of Organic Chemistry, Institute of Chemistry, , Rua Josu\u00e9 de Castro, s/n \u2013 Cidade Universit\u00e1ria \u201cZeferino Vaz\u201d, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-861 ,","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056885389","display_name":"Raghuvir K. Arni","orcid":"https://orcid.org/0000-0003-2460-1145"},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Raghuvir Krishnaswamy Arni","raw_affiliation_strings":["Multiuser Center for Biomolecular Innovation, Institute of Biosciences, Humanities and Exact Sciences, S\u00e3o Paulo State University (UNESP) , Rua Crist\u00f3v\u00e3o Colombo, 2265, Jardim Nazareth, S\u00e3o Jos\u00e9 do Rio Preto, SP, CEP 15054-000 ,"],"raw_orcid":"https://orcid.org/0000-0003-2460-1145","affiliations":[{"raw_affiliation_string":"Multiuser Center for Biomolecular Innovation, Institute of Biosciences, Humanities and Exact Sciences, S\u00e3o Paulo State University (UNESP) , Rua Crist\u00f3v\u00e3o Colombo, 2265, Jardim Nazareth, S\u00e3o Jos\u00e9 do Rio Preto, SP, CEP 15054-000 ,","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076918011","display_name":"Goran Neshich","orcid":"https://orcid.org/0000-0003-4982-0416"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Goran Neshich","raw_affiliation_strings":["Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,"],"raw_orcid":"https://orcid.org/0000-0003-4982-0416","affiliations":[{"raw_affiliation_string":"Computational Biology Research Group, Embrapa Digital Agriculture , Av. Andr\u00e9 Tosello, 209, Bar\u00e3o Geraldo, Campinas, SP, CEP 13083-886 ,","institution_ids":["https://openalex.org/I199691007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.8798,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.9117662,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.9014090299606323},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6963938474655151},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.621403157711029},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.6115380525588989},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48385870456695557},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.47058171033859253},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.47057244181632996},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.4364674687385559},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.4224667251110077},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3780888020992279},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.36251023411750793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30854007601737976},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21022745966911316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20444825291633606},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15417802333831787},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.1011456847190857},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.09379589557647705},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09147682785987854}],"concepts":[{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.9014090299606323},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6963938474655151},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.621403157711029},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.6115380525588989},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48385870456695557},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.47058171033859253},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.47057244181632996},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.4364674687385559},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4224667251110077},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3780888020992279},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.36251023411750793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30854007601737976},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21022745966911316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20444825291633606},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15417802333831787},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.1011456847190857},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.09379589557647705},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09147682785987854},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf424","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40838783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40838783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:www.alice.cnptia.embrapa.br:doc/1178194","is_oa":true,"landing_page_url":"http://www.alice.cnptia.embrapa.br/alice/handle/doc/1178194","pdf_url":"http://www.alice.cnptia.embrapa.br/bitstream/doc/1178194/1/Ap-STINGAllo-2025.pdf","source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:EMBRAPA","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12368853","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12368853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf424","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1932595770","display_name":null,"funder_award_id":"2020/08615-8","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G2373586993","display_name":null,"funder_award_id":"401415/2023-6","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G4639498239","display_name":null,"funder_award_id":"2023/02691-2","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6566139207","display_name":null,"funder_award_id":"2024/13327-2","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6777167977","display_name":null,"funder_award_id":"153794/2024-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6869770285","display_name":null,"funder_award_id":"153794/2024-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G7488245406","display_name":null,"funder_award_id":"2024/01956-5","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1551143570","https://openalex.org/W1604356881","https://openalex.org/W1857623540","https://openalex.org/W1971919786","https://openalex.org/W1979110436","https://openalex.org/W1982345335","https://openalex.org/W1984695931","https://openalex.org/W1995906059","https://openalex.org/W2004578534","https://openalex.org/W2026911129","https://openalex.org/W2047250503","https://openalex.org/W2055409343","https://openalex.org/W2056082813","https://openalex.org/W2075760267","https://openalex.org/W2083171198","https://openalex.org/W2085744296","https://openalex.org/W2118733486","https://openalex.org/W2124252968","https://openalex.org/W2125299915","https://openalex.org/W2133787009","https://openalex.org/W2139168027","https://openalex.org/W2152705200","https://openalex.org/W2152920762","https://openalex.org/W2177124199","https://openalex.org/W2530847795","https://openalex.org/W2558841060","https://openalex.org/W2766298563","https://openalex.org/W2804171113","https://openalex.org/W2924293762","https://openalex.org/W2986040158","https://openalex.org/W3130442532","https://openalex.org/W3153298328","https://openalex.org/W3156540022","https://openalex.org/W4367174467","https://openalex.org/W4387866453","https://openalex.org/W4391798114","https://openalex.org/W4402581865","https://openalex.org/W4403681346","https://openalex.org/W4403681347","https://openalex.org/W4404008755","https://openalex.org/W4410383164","https://openalex.org/W6678765042"],"related_works":["https://openalex.org/W2090630809","https://openalex.org/W2106612397","https://openalex.org/W4387804157","https://openalex.org/W2518314460","https://openalex.org/W2589205199","https://openalex.org/W2119891507","https://openalex.org/W2089869950","https://openalex.org/W1897312405","https://openalex.org/W2069319199","https://openalex.org/W2792435395"],"abstract_inverted_index":{"Allosteric":[0],"regulation":[1,218],"is":[2,226],"essential":[3],"for":[4,13,134],"modulating":[5],"protein":[6,22,67,172,217],"function":[7],"and":[8,87,187,219],"represents":[9],"a":[10,59,88,112,126,166,194,209],"promising":[11],"target":[12],"therapeutic":[14],"intervention,":[15],"yet":[16],"the":[17,21,25,149],"complex":[18],"dynamics":[19],"of":[20,28,37,98,115,145,184,216],"nanoenvironment":[23,68],"hinder":[24],"reliable":[26],"identification":[27],"allosteric":[29,72,95,168,221],"sites.":[30],"Traditional":[31],"pocket-based":[32,136],"predictors":[33],"miss":[34],"$\\sim":[35,116],"$18%":[36],"experimentally":[38],"confirmed":[39],"sites":[40,96],"that":[41,57,142],"lie":[42],"outside":[43],"surface":[44,99],"invaginations.":[45],"To":[46],"overcome":[47],"this":[48],"limitation,":[49],"we":[50],"developed":[51],"STINGAllo,":[52],"an":[53],"interactive":[54,181],"web":[55],"server":[56,225],"introduces":[58],"residue-centric":[60],"machine-learning":[61],"model.":[62],"Using":[63],"54":[64],"optimized":[65],"internal":[66],"descriptors,":[69],"STINGAllo":[70,93,170,200],"predicts":[71],"site-forming":[73],"residues":[74],"at":[75,161,229],"single-residue":[76],"resolution.":[77],"By":[78],"integrating":[79],"hydrophobic":[80],"interaction":[81],"networks,":[82],"local":[83],"density,":[84],"graph":[85],"connectivity,":[86],"unique":[89,146],"\"sponge":[90],"effect\"":[91],"metric,":[92],"detects":[94],"independently":[97],"geometry,":[100],"including":[101],"concave":[102],"pockets,":[103,186],"flat":[104],"surfaces,":[105],"or":[106,177],"even":[107],"cryptic":[108],"regions.":[109],"It":[110],"achieves":[111],"success":[113,129],"rate":[114,130],"$78%":[117],"on":[118],"benchmark":[119],"datasets,":[120],"substantially":[121],"outperforming":[122],"existing":[123],"methods":[124],"with":[125,132,165,205],"60.2%":[127],"overall":[128],"compared":[131],"21.1%-24.2%":[133],"contemporary":[135],"predictors.":[137],"Our":[138],"analysis":[139],"further":[140],"reveals":[141],"nearly":[143],"52.7%":[144],"proteins":[147],"in":[148],"Protein":[150],"Data":[151],"Bank":[152],"[(PDB);":[153],"119":[154],"851":[155],"entries,":[156],"14":[157],"November":[158],"2024]":[159],"contain":[160],"least":[162],"one":[163],"chain":[164],"predicted":[167,185],"site.":[169],"accepts":[171],"structures":[173],"via":[174],"PDB":[175],"identifiers":[176],"custom":[178],"uploads,":[179],"provides":[180],"3D":[182],"visualization":[183],"supports":[188],"integration":[189],"into":[190],"computational":[191,203],"pipelines":[192],"through":[193],"RESTful":[195],"application":[196],"programming":[197],"interface.":[198],"Overall,":[199],"bridges":[201],"advanced":[202],"prediction":[204],"user-friendly":[206],"design,":[207],"offering":[208],"robust":[210],"tool":[211],"expected":[212],"to":[213],"deepen":[214],"understanding":[215],"accelerate":[220],"drug":[222],"discovery.":[223],"The":[224],"freely":[227],"accessible":[228],"https://www.stingallo.cbi.cnptia.embrapa.br/.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
