{"id":"https://openalex.org/W4412683160","doi":"https://doi.org/10.1093/bib/bbaf377","title":"A conceptual framework for human\u2013AI collaborative genome annotation","display_name":"A conceptual framework for human\u2013AI collaborative genome annotation","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4412683160","doi":"https://doi.org/10.1093/bib/bbaf377","pmid":"https://pubmed.ncbi.nlm.nih.gov/40717285"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf377","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf377/63857641/bbaf377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf377/63857641/bbaf377.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100413473","display_name":"Xiaomei Li","orcid":"https://orcid.org/0000-0002-8870-3186"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Xiaomei Li","raw_affiliation_strings":["Agriculture and Food , CSIRO, 26 Pembroke Road, Marsfield, NSW 2122 ,"],"affiliations":[{"raw_affiliation_string":"Agriculture and Food , CSIRO, 26 Pembroke Road, Marsfield, NSW 2122 ,","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080205190","display_name":"Alex Whan","orcid":"https://orcid.org/0000-0002-6839-2915"},"institutions":[{"id":"https://openalex.org/I4210166020","display_name":"Ecosystem Sciences","ror":"https://ror.org/05mbqa235","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210166020","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Alex Whan","raw_affiliation_strings":["Agriculture and Food , CSIRO, 2-40 Clunies Ross Street, Acton, ACT 2601 ,"],"affiliations":[{"raw_affiliation_string":"Agriculture and Food , CSIRO, 2-40 Clunies Ross Street, Acton, ACT 2601 ,","institution_ids":["https://openalex.org/I4210166020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105347081","display_name":"Meredith McNeil","orcid":"https://orcid.org/0000-0003-4671-7210"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Meredith McNeil","raw_affiliation_strings":["Agriculture and Food , CSIRO, 306 Carmody Road, St Lucia, QLD 4067 ,"],"affiliations":[{"raw_affiliation_string":"Agriculture and Food , CSIRO, 306 Carmody Road, St Lucia, QLD 4067 ,","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071162754","display_name":"David Starns","orcid":"https://orcid.org/0000-0001-6583-9067"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Starns","raw_affiliation_strings":["School of Molecular and Cellular Biology, University of Leeds , Woodhouse Lane, Leeds LS2 9JT ,"],"affiliations":[{"raw_affiliation_string":"School of Molecular and Cellular Biology, University of Leeds , Woodhouse Lane, Leeds LS2 9JT ,","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021006985","display_name":"Jessica Irons","orcid":"https://orcid.org/0000-0002-0671-5168"},"institutions":[{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jessica Irons","raw_affiliation_strings":["Data 61, CSIRO , 13 Garden Street, Eveleigh, NSW 2015 ,"],"affiliations":[{"raw_affiliation_string":"Data 61, CSIRO , 13 Garden Street, Eveleigh, NSW 2015 ,","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033149229","display_name":"Samuel C. Andrew","orcid":"https://orcid.org/0000-0003-4589-2746"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Samuel C Andrew","raw_affiliation_strings":["Agriculture and Food, CSIRO , 26 Pembroke Road, Marsfield, NSW 2122 ,"],"affiliations":[{"raw_affiliation_string":"Agriculture and Food, CSIRO , 26 Pembroke Road, Marsfield, NSW 2122 ,","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068225528","display_name":"Rados\u0142aw Suchecki","orcid":"https://orcid.org/0000-0003-4992-9497"},"institutions":[{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210151393","display_name":"Universidad San Carlos","ror":"https://ror.org/05b1ymr19","country_code":"PY","type":"education","lineage":["https://openalex.org/I4210151393"]}],"countries":["AU","PY"],"is_corresponding":false,"raw_author_name":"Rad Suchecki","raw_affiliation_strings":["Agriculture and Food, CSIRO , 40 Waite Road, Urrbrae, SA 5064 ,","sAlkahest Inc. , 125 Shoreway Rd D, San Carlos, CA 94070 ,"],"affiliations":[{"raw_affiliation_string":"Agriculture and Food, CSIRO , 40 Waite Road, Urrbrae, SA 5064 ,","institution_ids":["https://openalex.org/I4210138055"]},{"raw_affiliation_string":"sAlkahest Inc. , 125 Shoreway Rd D, San Carlos, CA 94070 ,","institution_ids":["https://openalex.org/I4210151393"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100413473"],"corresponding_institution_ids":["https://openalex.org/I1292875679"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.343,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88851096,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7922527194023132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7302690148353577},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5616527199745178},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5353833436965942},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5255690217018127},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4546405076980591},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4461916387081146},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.44562897086143494},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4236631691455841},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.36886096000671387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30025285482406616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08647897839546204},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07765257358551025}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7922527194023132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7302690148353577},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5616527199745178},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5353833436965942},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5255690217018127},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4546405076980591},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4461916387081146},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.44562897086143494},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4236631691455841},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.36886096000671387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30025285482406616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08647897839546204},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07765257358551025},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf377","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf377/63857641/bbaf377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40717285","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40717285","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:229031","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:12301185","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12301185","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf377","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf377/63857641/bbaf377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.5400000214576721}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412683160.pdf","grobid_xml":"https://content.openalex.org/works/W4412683160.grobid-xml"},"referenced_works_count":122,"referenced_works":["https://openalex.org/W159790035","https://openalex.org/W1515497241","https://openalex.org/W1767868569","https://openalex.org/W1976514666","https://openalex.org/W1996700726","https://openalex.org/W2009940763","https://openalex.org/W2012990826","https://openalex.org/W2055043387","https://openalex.org/W2106318529","https://openalex.org/W2112227057","https://openalex.org/W2114676751","https://openalex.org/W2115150863","https://openalex.org/W2133787379","https://openalex.org/W2135230723","https://openalex.org/W2136826997","https://openalex.org/W2138473401","https://openalex.org/W2142639170","https://openalex.org/W2147984368","https://openalex.org/W2152672184","https://openalex.org/W2164085656","https://openalex.org/W2169613734","https://openalex.org/W2336957559","https://openalex.org/W2341861303","https://openalex.org/W2470052926","https://openalex.org/W2612690371","https://openalex.org/W2790207952","https://openalex.org/W2807099876","https://openalex.org/W2901218091","https://openalex.org/W2905113107","https://openalex.org/W2905374824","https://openalex.org/W2907489510","https://openalex.org/W2935703330","https://openalex.org/W2946690328","https://openalex.org/W2981398720","https://openalex.org/W2990138404","https://openalex.org/W3028516693","https://openalex.org/W3036298167","https://openalex.org/W3045623890","https://openalex.org/W3087657942","https://openalex.org/W3093840653","https://openalex.org/W3112600195","https://openalex.org/W3135335171","https://openalex.org/W3168308442","https://openalex.org/W3203816956","https://openalex.org/W3212444379","https://openalex.org/W4205403245","https://openalex.org/W4226429201","https://openalex.org/W4244771182","https://openalex.org/W4287184267","https://openalex.org/W4288089799","https://openalex.org/W4301958211","https://openalex.org/W4309506674","https://openalex.org/W4320165837","https://openalex.org/W4366563389","https://openalex.org/W4367173676","https://openalex.org/W4383108457","https://openalex.org/W4385571689","https://openalex.org/W4385682136","https://openalex.org/W4386302825","https://openalex.org/W4387433546","https://openalex.org/W4387636003","https://openalex.org/W4391116828","https://openalex.org/W4391670633","https://openalex.org/W4391873151","https://openalex.org/W4392077871","https://openalex.org/W4392923480","https://openalex.org/W4394019136","https://openalex.org/W4394769973","https://openalex.org/W4395703652","https://openalex.org/W4396622252","https://openalex.org/W4396723768","https://openalex.org/W4397004462","https://openalex.org/W4399115364","https://openalex.org/W4399151368","https://openalex.org/W4399187206","https://openalex.org/W4399391351","https://openalex.org/W4399991282","https://openalex.org/W4400157298","https://openalex.org/W4400343274","https://openalex.org/W4401201158","https://openalex.org/W4403458599","https://openalex.org/W4403925918","https://openalex.org/W4404283941","https://openalex.org/W4404534210","https://openalex.org/W4404627693","https://openalex.org/W4404782367","https://openalex.org/W4405030683","https://openalex.org/W4406706905","https://openalex.org/W4406800520","https://openalex.org/W4406828533","https://openalex.org/W4409051474","https://openalex.org/W4409735071","https://openalex.org/W4409884049","https://openalex.org/W6676947430","https://openalex.org/W6681976172","https://openalex.org/W6739901393","https://openalex.org/W6755207826","https://openalex.org/W6756551096","https://openalex.org/W6769627184","https://openalex.org/W6778883912","https://openalex.org/W6790893193","https://openalex.org/W6811107791","https://openalex.org/W6846254642","https://openalex.org/W6849732303","https://openalex.org/W6856086692","https://openalex.org/W6856160515","https://openalex.org/W6857691370","https://openalex.org/W6861553785","https://openalex.org/W6862457529","https://openalex.org/W6864260589","https://openalex.org/W6866776763","https://openalex.org/W6868381564","https://openalex.org/W6869079682","https://openalex.org/W6869271735","https://openalex.org/W6869441014","https://openalex.org/W6870101886","https://openalex.org/W6870689919","https://openalex.org/W6879810682","https://openalex.org/W6880077928","https://openalex.org/W6891869351","https://openalex.org/W6891912544","https://openalex.org/W6910512743"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W2162782320","https://openalex.org/W2009940763","https://openalex.org/W1760213857","https://openalex.org/W3111061871","https://openalex.org/W2099626126","https://openalex.org/W2043778888","https://openalex.org/W45826765","https://openalex.org/W2024185974","https://openalex.org/W2537312848"],"abstract_inverted_index":{"Genome":[0,106],"annotation":[1,126],"is":[2,82],"essential":[3],"for":[4,16,40,92],"understanding":[5],"the":[6,56,70,78,111,124,131],"functional":[7],"elements":[8],"within":[9],"genomes.":[10],"While":[11],"automated":[12,50],"methods":[13],"are":[14],"indispensable":[15],"processing":[17],"large-scale":[18],"genomic":[19],"data,":[20],"they":[21],"often":[22],"face":[23],"challenges":[24,151],"in":[25,161],"accurately":[26],"predicting":[27],"gene":[28],"structures":[29],"and":[30,42,52,72,85,116,122,143,152],"functions.":[31],"Consequently,":[32],"manual":[33,53,79],"curation":[34,54,80],"by":[35],"domain":[36],"experts":[37],"remains":[38],"crucial":[39],"validating":[41],"refining":[43],"these":[44,97],"predictions.":[45],"These":[46],"combined":[47],"outcomes":[48],"from":[49],"tools":[51],"highlight":[55],"importance":[57],"of":[58,74,133],"integrating":[59,134],"human":[60,120],"expertise":[61],"with":[62],"artificial":[63],"intelligence":[64],"(AI)":[65],"capabilities":[66,121],"to":[67,90,118,141,157],"improve":[68],"both":[69],"accuracy":[71],"efficiency":[73],"genome":[75,125],"annotation.":[76],"However,":[77],"process":[81],"inherently":[83],"labor-intensive":[84],"time-consuming,":[86],"making":[87],"it":[88],"difficult":[89],"scale":[91],"large":[93,135],"datasets.":[94],"To":[95],"address":[96],"challenges,":[98],"we":[99,129,148],"propose":[100],"a":[101],"conceptual":[102],"framework,":[103],"Human-AI":[104],"Collaborative":[105],"Annotation":[107],"(HAICoGA),":[108],"that":[109],"leverages":[110],"synergistic":[112],"partnership":[113],"between":[114],"humans":[115],"AI":[117],"enhance":[119],"accelerate":[123],"process.":[127],"Additionally,":[128],"explore":[130],"potential":[132],"language":[136],"models":[137],"into":[138],"this":[139,162],"framework":[140],"support":[142],"augment":[144],"specific":[145],"tasks.":[146],"Finally,":[147],"discuss":[149],"emerging":[150],"outline":[153],"open":[154],"research":[155],"questions":[156],"guide":[158],"further":[159],"exploration":[160],"area.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
