{"id":"https://openalex.org/W4412618849","doi":"https://doi.org/10.1093/bib/bbaf365","title":"Path-MGCN: a pathway activity-based multi-view graph convolutional network for determining spatial domains","display_name":"Path-MGCN: a pathway activity-based multi-view graph convolutional network for determining spatial domains","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4412618849","doi":"https://doi.org/10.1093/bib/bbaf365","pmid":"https://pubmed.ncbi.nlm.nih.gov/40698867"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf365","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf365/63828780/bbaf365.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf365/63828780/bbaf365.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110050637","display_name":"Qirui Zhou","orcid":"https://orcid.org/0009-0003-8646-1034"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qirui Zhou","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035820378","display_name":"Chaowen Li","orcid":"https://orcid.org/0000-0003-1561-2723"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaowen Li","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100408372","display_name":"Chao Chen","orcid":"https://orcid.org/0000-0002-8112-1044"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Chen","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110062524","display_name":"Songqing Gu","orcid":null},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Songqing Gu","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112873202","display_name":"Weijun Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weijun Sun","raw_affiliation_strings":["Intelligent Systems and Optimization Integration, School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","Intelligent Systems and Optimization Integration, School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"Intelligent Systems and Optimization Integration, School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"Intelligent Systems and Optimization Integration, School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001394657","display_name":"Zongmeng Zhang","orcid":"https://orcid.org/0000-0002-4144-6901"},"institutions":[{"id":"https://openalex.org/I190242452","display_name":"Guangdong Pharmaceutical University","ror":"https://ror.org/02vg7mz57","country_code":"CN","type":"education","lineage":["https://openalex.org/I190242452"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongmeng Zhang","raw_affiliation_strings":["School of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I190242452"]},{"raw_affiliation_string":"School of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I190242452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101037842","display_name":"Yishan Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122543","display_name":"Guangdong Polytechnic Normal University","ror":"https://ror.org/02pcb5m77","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210122543"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yishan Cai","raw_affiliation_strings":["School of Computer Science, Guangdong Polytechnic Normal University , No. 293 West Zhongshan Avenue, Tianhe District, Guangzhou 510665,","School of Computer Science, Guangdong Polytechnic Normal University, No. 293 West Zhongshan Avenue, Tianhe District, Guangzhou 510665, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Guangdong Polytechnic Normal University , No. 293 West Zhongshan Avenue, Tianhe District, Guangzhou 510665,","institution_ids":["https://openalex.org/I4210122543"]},{"raw_affiliation_string":"School of Computer Science, Guangdong Polytechnic Normal University, No. 293 West Zhongshan Avenue, Tianhe District, Guangzhou 510665, China","institution_ids":["https://openalex.org/I4210122543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063379157","display_name":"Yonghui Huang","orcid":"https://orcid.org/0000-0002-9954-5494"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonghui Huang","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100444832","display_name":"Hongtao Liu","orcid":"https://orcid.org/0000-0001-6939-3672"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongtao Liu","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017785676","display_name":"Chao Yang","orcid":"https://orcid.org/0000-0003-4181-5356"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Yang","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101726496","display_name":"Xin Chen","orcid":"https://orcid.org/0000-0001-7234-8135"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Chen","raw_affiliation_strings":["School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China"],"affiliations":[{"raw_affiliation_string":"School of Automation, Guangdong University of Technology , No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006,","institution_ids":["https://openalex.org/I139024713"]},{"raw_affiliation_string":"School of Automation, Guangdong University of Technology, No. 100 Waihuan Xi Road, Guangzhou Higher Education Mega Center, Panyu District, Guangzhou 510006, China","institution_ids":["https://openalex.org/I139024713"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5110050637"],"corresponding_institution_ids":["https://openalex.org/I139024713"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4014,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.84555689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9575999975204468,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9575999975204468,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10757","display_name":"Geographic Information Systems Studies","score":0.9384999871253967,"subfield":{"id":"https://openalex.org/subfields/3305","display_name":"Geography, Planning and Development"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11596","display_name":"Constraint Satisfaction and Optimization","score":0.9316999912261963,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6870371103286743},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6391131281852722},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.6297741532325745},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35156410932540894},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.29371780157089233},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.13647502660751343}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6870371103286743},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6391131281852722},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.6297741532325745},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35156410932540894},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.29371780157089233},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.13647502660751343}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf365","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf365/63828780/bbaf365.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40698867","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40698867","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12284772","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12284772","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf365","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf365/63828780/bbaf365.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G37568934","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4313167312","display_name":null,"funder_award_id":"62003094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5009775487","display_name":null,"funder_award_id":"620030","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5743616050","display_name":null,"funder_award_id":"2024A","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5996794080","display_name":null,"funder_award_id":"2024A1515012745","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412618849.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W221202538","https://openalex.org/W1896351481","https://openalex.org/W1974565082","https://openalex.org/W1974953982","https://openalex.org/W2025398141","https://openalex.org/W2058592916","https://openalex.org/W2083005883","https://openalex.org/W2103017472","https://openalex.org/W2117692326","https://openalex.org/W2159707944","https://openalex.org/W2168014041","https://openalex.org/W2508639944","https://openalex.org/W2566747056","https://openalex.org/W2913645272","https://openalex.org/W2940947272","https://openalex.org/W2941973284","https://openalex.org/W2945057866","https://openalex.org/W2965843226","https://openalex.org/W2979761477","https://openalex.org/W2998795792","https://openalex.org/W3017023874","https://openalex.org/W3017967922","https://openalex.org/W3020015603","https://openalex.org/W3032266082","https://openalex.org/W3108118546","https://openalex.org/W3125648521","https://openalex.org/W3126958162","https://openalex.org/W3130195400","https://openalex.org/W3165120573","https://openalex.org/W3205213119","https://openalex.org/W3211150579","https://openalex.org/W4226192560","https://openalex.org/W4231254854","https://openalex.org/W4283704002","https://openalex.org/W4284690118","https://openalex.org/W4294216483","https://openalex.org/W4306406844","https://openalex.org/W4309330418","https://openalex.org/W4322738920","https://openalex.org/W4384665375","https://openalex.org/W4386608057","https://openalex.org/W4390814844","https://openalex.org/W4399892951","https://openalex.org/W4401967826","https://openalex.org/W4406870564","https://openalex.org/W4409591681","https://openalex.org/W4410396119","https://openalex.org/W6879178810","https://openalex.org/W6880655159"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Spatial":[0],"transcriptomics":[1],"(ST)":[2],"comprehensively":[3],"measure":[4],"the":[5,11,26,35,116,170],"gene":[6,76,81],"expression":[7,82],"profiles":[8],"while":[9],"preserving":[10],"spatial":[12,22,89,219],"information.":[13,67,119],"Accumulated":[14],"computational":[15],"frameworks":[16],"have":[17],"been":[18],"proposed":[19],"to":[20,33,114,189,212],"identify":[21],"domains,":[23],"one":[24],"of":[25,29,157,172,221],"fundamental":[27],"tasks":[28],"ST":[30,204],"data":[31,49],"analysis,":[32,205],"understand":[34],"tissue":[36,214],"architecture.":[37],"However,":[38],"current":[39],"methods":[40,146],"often":[41],"overlook":[42],"pathway-level":[43],"functional":[44,91,200],"context":[45],"and":[46,83,90,99,106,131,141,147,159,177,209,216,234],"struggle":[47],"with":[48,61],"sparsity.":[50],"Therefore,":[51],"we":[52],"develop":[53],"Path-MGCN,":[54],"a":[55,109],"multi-view":[56,94],"graph":[57],"convolutional":[58],"network":[59],"(GCN)":[60],"attention":[62,105],"mechanism,":[63],"which":[64],"integrates":[65],"pathway":[66,72,153],"We":[68],"first":[69],"calculate":[70],"spot-level":[71],"activity":[73],"scores":[74],"via":[75],"set":[77],"variation":[78],"analysis":[79],"from":[80],"construct":[84],"distinct":[85],"adjacency":[86],"graphs":[87],"representing":[88],"proximity.":[92],"A":[93],"GCN":[95],"learns":[96],"spatial,":[97],"pathway,":[98],"shared":[100],"embeddings":[101],"adaptively":[102],"fused":[103],"by":[104,108],"followed":[107],"Zero-inflated":[110],"negative":[111],"binomial":[112],"decoder":[113],"retain":[115],"original":[117],"transcriptome":[118],"Comprehensive":[120],"evaluations":[121],"across":[122,151],"diverse":[123],"datasets":[124],"(human":[125],"dorsolateral":[126],"prefrontal":[127],"cortex,":[128],"breast":[129,195],"cancer":[130],"mouse":[132],"brain)":[133],"at":[134],"various":[135],"resolution":[136],"demonstrate":[137],"Path-MGCN's":[138],"superior":[139],"accuracy":[140],"robustness,":[142],"significantly":[143],"outperforming":[144],"state-of-the-art":[145],"maintaining":[148],"high":[149],"performance":[150],"different":[152],"databases":[154],"(Kyoto":[155],"Encyclopedia":[156],"Genes":[158],"Genomes,":[160],"Gene":[161],"Ontology,":[162],"Reactome).":[163],"Crucially,":[164],"Path-MGCN":[165,202],"enhances":[166],"biological":[167],"interpretability,":[168],"enabling":[169],"identification":[171],"Tertiary":[173],"lymphoid":[174],"structure-like":[175],"regions":[176],"spatially":[178],"resolved":[179],"metabolic":[180],"heterogeneity":[181,215],"(hypoxia,":[182],"glycolysis,":[183],"AMP-activated":[184],"protein":[185],"kinase":[186],"signaling)":[187],"linked":[188],"tumor":[190],"progression":[191],"stages":[192],"in":[193],"human":[194],"cancer.":[196],"By":[197],"effectively":[198],"integrating":[199],"context,":[201],"advances":[203],"providing":[206],"an":[207],"accurate":[208],"interpretable":[210],"framework":[211],"dissect":[213],"enables":[217],"detailed":[218],"mapping":[220],"molecular":[222],"pathways":[223],"that":[224],"highlights":[225],"potential":[226],"targeted":[227],"therapeutic":[228],"strategies":[229],"crucial":[230],"for":[231],"developing":[232],"safe":[233],"effective":[235],"synergistic":[236],"anti-tumor":[237],"therapies.":[238]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
