{"id":"https://openalex.org/W4412449676","doi":"https://doi.org/10.1093/bib/bbaf340","title":"Beyond static structures: protein dynamic conformations modeling in the post-AlphaFold era","display_name":"Beyond static structures: protein dynamic conformations modeling in the post-AlphaFold era","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4412449676","doi":"https://doi.org/10.1093/bib/bbaf340","pmid":"https://pubmed.ncbi.nlm.nih.gov/40663654"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf340","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf340/63770431/bbaf340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf340/63770431/bbaf340.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078605363","display_name":"Xinyue Cui","orcid":null},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinyue Cui","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100731232","display_name":"Lingyu Ge","orcid":"https://orcid.org/0000-0001-6549-7546"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingyu Ge","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107392042","display_name":"Xia Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]},{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xia Chen","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103070073","display_name":"Zhipeng Lv","orcid":"https://orcid.org/0000-0001-5086-9319"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zexin Lv","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058113371","display_name":"Suhui Wang","orcid":"https://orcid.org/0000-0003-4839-956X"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Suhui Wang","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023785113","display_name":"Xiaogen Zhou","orcid":"https://orcid.org/0000-0001-6839-1923"},"institutions":[{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]},{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaogen Zhou","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049735973","display_name":"Guijun Zhang","orcid":"https://orcid.org/0000-0002-7815-5884"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guijun Zhang","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Hangzhou 310023, Zhejiang ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I55712492","https://openalex.org/I168879160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5078605363"],"corresponding_institution_ids":["https://openalex.org/I168879160","https://openalex.org/I55712492","https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":23.7809,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.9972729,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformative-learning","display_name":"Transformative learning","score":0.6206806898117065},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5561472177505493},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.5501644015312195},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5032069087028503},{"id":"https://openalex.org/keywords/milestone","display_name":"Milestone","score":0.5007288455963135},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.461132675409317},{"id":"https://openalex.org/keywords/protein-dynamics","display_name":"Protein dynamics","score":0.42060935497283936},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38002416491508484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32468128204345703},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18937364220619202},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15854942798614502},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.08010914921760559}],"concepts":[{"id":"https://openalex.org/C70587473","wikidata":"https://www.wikidata.org/wiki/Q7834111","display_name":"Transformative learning","level":2,"score":0.6206806898117065},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5561472177505493},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.5501644015312195},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5032069087028503},{"id":"https://openalex.org/C120060458","wikidata":"https://www.wikidata.org/wiki/Q10145","display_name":"Milestone","level":2,"score":0.5007288455963135},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.461132675409317},{"id":"https://openalex.org/C2775981520","wikidata":"https://www.wikidata.org/wiki/Q17156992","display_name":"Protein dynamics","level":3,"score":0.42060935497283936},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38002416491508484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32468128204345703},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18937364220619202},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15854942798614502},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.08010914921760559},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf340","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf340/63770431/bbaf340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40663654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40663654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12262120","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12262120","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf340","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf340/63770431/bbaf340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1320274221","display_name":null,"funder_award_id":"2022ZD0115103","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6546477156","display_name":null,"funder_award_id":"62173304, 62203389","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7271978295","display_name":null,"funder_award_id":"62203389","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412449676.pdf","grobid_xml":"https://content.openalex.org/works/W4412449676.grobid-xml"},"referenced_works_count":90,"referenced_works":["https://openalex.org/W1626583747","https://openalex.org/W1995730663","https://openalex.org/W1995816895","https://openalex.org/W1997857165","https://openalex.org/W2007137945","https://openalex.org/W2013425283","https://openalex.org/W2037312364","https://openalex.org/W2048822589","https://openalex.org/W2069644607","https://openalex.org/W2086817352","https://openalex.org/W2103325328","https://openalex.org/W2115167726","https://openalex.org/W2119550029","https://openalex.org/W2132262459","https://openalex.org/W2158343751","https://openalex.org/W2161151688","https://openalex.org/W2167661287","https://openalex.org/W2178096376","https://openalex.org/W2290412022","https://openalex.org/W2315174892","https://openalex.org/W2329336071","https://openalex.org/W2901361432","https://openalex.org/W2940537888","https://openalex.org/W2946078915","https://openalex.org/W2949223833","https://openalex.org/W2949867299","https://openalex.org/W2952475062","https://openalex.org/W3042198040","https://openalex.org/W3094458641","https://openalex.org/W3103902133","https://openalex.org/W3129322014","https://openalex.org/W3131256334","https://openalex.org/W3132153121","https://openalex.org/W3177828909","https://openalex.org/W3179485843","https://openalex.org/W3186179742","https://openalex.org/W3198485384","https://openalex.org/W3205208140","https://openalex.org/W3206989198","https://openalex.org/W3213803608","https://openalex.org/W4200391900","https://openalex.org/W4206304437","https://openalex.org/W4210598838","https://openalex.org/W4214847177","https://openalex.org/W4281632800","https://openalex.org/W4285272870","https://openalex.org/W4292636432","https://openalex.org/W4295165394","https://openalex.org/W4296025738","https://openalex.org/W4296618063","https://openalex.org/W4296963678","https://openalex.org/W4320040108","https://openalex.org/W4321090885","https://openalex.org/W4327550249","https://openalex.org/W4362679214","https://openalex.org/W4386597884","https://openalex.org/W4386793933","https://openalex.org/W4387893024","https://openalex.org/W4388566582","https://openalex.org/W4388627063","https://openalex.org/W4388638767","https://openalex.org/W4388870515","https://openalex.org/W4389141360","https://openalex.org/W4390663686","https://openalex.org/W4391530977","https://openalex.org/W4391542588","https://openalex.org/W4391995802","https://openalex.org/W4392822103","https://openalex.org/W4393233076","https://openalex.org/W4396721167","https://openalex.org/W4396722127","https://openalex.org/W4396723792","https://openalex.org/W4396789292","https://openalex.org/W4396953527","https://openalex.org/W4399238140","https://openalex.org/W4399540271","https://openalex.org/W4401209996","https://openalex.org/W4403118804","https://openalex.org/W4403301031","https://openalex.org/W4404105372","https://openalex.org/W4404826794","https://openalex.org/W4404916362","https://openalex.org/W4405036886","https://openalex.org/W4408220597","https://openalex.org/W4408293717","https://openalex.org/W4410078871","https://openalex.org/W4411624461","https://openalex.org/W4411633814","https://openalex.org/W6647909628","https://openalex.org/W6798272402"],"related_works":["https://openalex.org/W2027077329","https://openalex.org/W3131724274","https://openalex.org/W2155648172","https://openalex.org/W2378801510","https://openalex.org/W2951012447","https://openalex.org/W2311509164","https://openalex.org/W2010414728","https://openalex.org/W2290574198","https://openalex.org/W2946078915","https://openalex.org/W1981159786"],"abstract_inverted_index":{"The":[0],"emergence":[1],"of":[2,56,67,113,133,140],"deep":[3],"learning,":[4],"particularly":[5],"AlphaFold,":[6],"has":[7],"revolutionized":[8],"static":[9,28,45],"protein":[10,21,57,68,114,134],"structure":[11],"prediction,":[12],"marking":[13],"a":[14],"transformative":[15],"milestone":[16],"in":[17,75,79,137],"structural":[18,143],"biology.":[19,144],"However,":[20],"function":[22,58],"is":[23,32,49],"not":[24],"solely":[25],"determined":[26],"by":[27,35],"three-dimensional":[29],"structures":[30],"but":[31],"fundamentally":[33],"governed":[34],"dynamic":[36,69],"transitions":[37],"between":[38],"multiple":[39],"conformational":[40],"states.":[41],"This":[42,61,120],"shift":[43],"from":[44],"to":[46,100,109,123,128],"multi-state":[47],"representations":[48],"crucial":[50],"for":[51],"understanding":[52,112],"the":[53,64,80,130,138],"mechanistic":[54],"basis":[55],"and":[59,83,92,104,116,126],"regulation.":[60],"review":[62],"outlines":[63],"fundamental":[65],"concepts":[66],"conformations,":[70],"surveys":[71],"recent":[72],"computational":[73],"advances":[74],"modeling":[76],"these":[77,102],"dynamics":[78,115],"post-AlphaFold":[81],"era,":[82],"highlights":[84],"key":[85],"challenges,":[86],"including":[87],"data":[88],"limitations,":[89],"methodological":[90],"constraints,":[91],"evaluation":[93],"metrics.":[94],"We":[95],"also":[96],"discuss":[97],"potential":[98],"strategies":[99],"address":[101],"challenges":[103],"explore":[105],"future":[106],"research":[107],"directions":[108],"deepen":[110],"our":[111],"their":[117],"functional":[118],"implications.":[119],"work":[121],"aims":[122],"provide":[124],"insights":[125],"perspectives":[127],"facilitate":[129],"ongoing":[131],"development":[132],"conformation":[135],"studies":[136],"era":[139],"artificial":[141],"intelligence-driven":[142]},"counts_by_year":[{"year":2026,"cited_by_count":16},{"year":2025,"cited_by_count":13}],"updated_date":"2026-03-26T15:22:09.906841","created_date":"2025-10-10T00:00:00"}
