{"id":"https://openalex.org/W4412363123","doi":"https://doi.org/10.1093/bib/bbaf318","title":"Assessing Random Forest self-reproducibility for optimal short biomarker signature discovery","display_name":"Assessing Random Forest self-reproducibility for optimal short biomarker signature discovery","publication_year":2025,"publication_date":"2025-06-25","ids":{"openalex":"https://openalex.org/W4412363123","doi":"https://doi.org/10.1093/bib/bbaf318","pmid":"https://pubmed.ncbi.nlm.nih.gov/40641044"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf318","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf318/63725421/bbaf318.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf318/63725421/bbaf318.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067817795","display_name":"Ahmed Debit","orcid":"https://orcid.org/0000-0002-2662-0772"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I4210129409","display_name":"Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/03mxktp47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210096427","https://openalex.org/I4210129409"]}],"countries":["BE","FR"],"is_corresponding":false,"raw_author_name":"Ahmed Debit","raw_affiliation_strings":["BIO3, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","Institut de Biologie de l\u2019ENS (IBENS), Ecole Normale Superieure , 46 rue d'Ulm, 75005 Paris ,","Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","Institut de Biologie de l'ENS (IBENS), Ecole Normale Superieure, 46 rue d'Ulm, 75005 Paris, France","BIO3, GIGA Institute, University of Liege (ULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-2662-0772","affiliations":[{"raw_affiliation_string":"BIO3, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Institut de Biologie de l\u2019ENS (IBENS), Ecole Normale Superieure , 46 rue d'Ulm, 75005 Paris ,","institution_ids":["https://openalex.org/I4210129409"]},{"raw_affiliation_string":"Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Institut de Biologie de l'ENS (IBENS), Ecole Normale Superieure, 46 rue d'Ulm, 75005 Paris, France","institution_ids":["https://openalex.org/I4210129409"]},{"raw_affiliation_string":"BIO3, GIGA Institute, University of Liege (ULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084086966","display_name":"Christophe Poulet","orcid":"https://orcid.org/0000-0003-4055-5441"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I4210134544","display_name":"Centre Hospitalier Universitaire de Li\u00e8ge","ror":"https://ror.org/044s61914","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210134544"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Christophe Poulet","raw_affiliation_strings":["Department of Rheumatology, GIGA Institute, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","Fibropole Research Group, University Hospital of Liege (CHULiege) , Avenue de l'Hopital 1, 4000 Liege ,","GIGA-I3 Research Group, GIGA Institute, University of Liege (ULiege) and University Hospital of Liege (CHULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","GIGA-I3 Research Group, GIGA Institute, University of Liege (ULiege) and University Hospital of Liege (CHULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Rheumatology, GIGA Institute, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Fibropole Research Group, University Hospital of Liege (CHULiege) , Avenue de l'Hopital 1, 4000 Liege ,","institution_ids":["https://openalex.org/I4210134544","https://openalex.org/I157674565"]},{"raw_affiliation_string":"GIGA-I3 Research Group, GIGA Institute, University of Liege (ULiege) and University Hospital of Liege (CHULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"GIGA-I3 Research Group, GIGA Institute, University of Liege (ULiege) and University Hospital of Liege (CHULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056716594","display_name":"Claire Josse","orcid":"https://orcid.org/0000-0003-0315-3718"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I4210134544","display_name":"Centre Hospitalier Universitaire de Li\u00e8ge","ror":"https://ror.org/044s61914","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210134544"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Claire Josse","raw_affiliation_strings":["Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue de l'Hopital 1, 4000 Liege ,","Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue de l'Hopital 1, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565","https://openalex.org/I4210134544"]},{"raw_affiliation_string":"Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I157674565","https://openalex.org/I4210134544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071675004","display_name":"Guy J\u00e9rusalem","orcid":"https://orcid.org/0000-0002-8845-0043"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I4210134544","display_name":"Centre Hospitalier Universitaire de Li\u00e8ge","ror":"https://ror.org/044s61914","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210134544"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Guy Jerusalem","raw_affiliation_strings":["Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue de l'Hopital 1, 4000 Liege ,","Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege) , Avenue de l'Hopital 1, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565","https://openalex.org/I4210134544"]},{"raw_affiliation_string":"Oncology Department, University Hospital of Liege (CHULiege), University of Liege (ULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I157674565","https://openalex.org/I4210134544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114376683","display_name":"Chlo\u00e9\u2010Agathe Azencott","orcid":"https://orcid.org/0000-0003-1003-301X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Chloe-Agathe Azencott","raw_affiliation_strings":["Inserm, U900 , 26 rue d'Ulm, F-75005 Paris ,","Institut Curie, PSL Research University , 26 rue d'Ulm, F-75005 Paris ,","Mines Paris, PSL Research University , CBIO-Centre for Computational Biology, 60 boulevard Saint-Michel, F-75006 Paris ,","Inserm, U900, 26 rue d'Ulm, F-75005 Paris, France","Institut Curie, PSL Research University, 26 rue d'Ulm, F-75005 Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inserm, U900 , 26 rue d'Ulm, F-75005 Paris ,","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, PSL Research University , 26 rue d'Ulm, F-75005 Paris ,","institution_ids":["https://openalex.org/I2746051580","https://openalex.org/I80043"]},{"raw_affiliation_string":"Mines Paris, PSL Research University , CBIO-Centre for Computational Biology, 60 boulevard Saint-Michel, F-75006 Paris ,","institution_ids":["https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"raw_affiliation_string":"Inserm, U900, 26 rue d'Ulm, F-75005 Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut Curie, PSL Research University, 26 rue d'Ulm, F-75005 Paris, France","institution_ids":["https://openalex.org/I2746051580","https://openalex.org/I80043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083510035","display_name":"Vincent Bours","orcid":"https://orcid.org/0000-0002-5934-6247"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I4210134544","display_name":"Centre Hospitalier Universitaire de Li\u00e8ge","ror":"https://ror.org/044s61914","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210134544"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Vincent Bours","raw_affiliation_strings":["Center for Human Genetics, University Hospital of Liege (CHULiege) , Avenue de l'Hopital 1, 4000 Liege ,","Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","Center for Human Genetics, University Hospital of Liege (CHULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Human Genetics, University Hospital of Liege (CHULiege) , Avenue de l'Hopital 1, 4000 Liege ,","institution_ids":["https://openalex.org/I4210134544","https://openalex.org/I157674565"]},{"raw_affiliation_string":"Laboratory of Human Genetics, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Center for Human Genetics, University Hospital of Liege (CHULiege), Avenue de l'Hopital 1, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I4210134544","https://openalex.org/I157674565"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051714890","display_name":"Kristel Van Steen","orcid":"https://orcid.org/0000-0001-9868-5033"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Kristel Van Steen","raw_affiliation_strings":["BIO3, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","BIO3, GIGA Institute, University of Liege (ULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIO3, GIGA Institute, University of Liege (ULiege) , Avenue Hippocrate 1/11, 4000 Liege ,","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"BIO3, GIGA Institute, University of Liege (ULiege), Avenue Hippocrate 1/11, 4000 Liege, Belgium","institution_ids":["https://openalex.org/I157674565"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13148675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.8350051641464233},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6470258235931396},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.6370327472686768},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6312036514282227},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.59438157081604},{"id":"https://openalex.org/keywords/resampling","display_name":"Resampling","score":0.5409049391746521},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47109612822532654},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.4599034786224365},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42113423347473145},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39970752596855164},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38126927614212036},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24952760338783264}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.8350051641464233},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6470258235931396},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.6370327472686768},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6312036514282227},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.59438157081604},{"id":"https://openalex.org/C150921843","wikidata":"https://www.wikidata.org/wiki/Q1170431","display_name":"Resampling","level":2,"score":0.5409049391746521},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47109612822532654},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.4599034786224365},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42113423347473145},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39970752596855164},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38126927614212036},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24952760338783264},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbaf318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf318","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf318/63725421/bbaf318.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40641044","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40641044","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:orbi.ulg.ac.be:2268/335233","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/335233","pdf_url":null,"source":{"id":"https://openalex.org/S4306401300","display_name":"ORBi (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 26 (4) (2025-07)","raw_type":"peer reviewed"},{"id":"pmh:oai:HAL:hal-04188150v1","is_oa":false,"landing_page_url":"https://minesparis-psl.hal.science/hal-04188150","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2025, 26 (4), &#x27E8;10.1093/bib/bbaf318&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:12245662","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12245662","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf318","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf318","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf318/63725421/bbaf318.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.75}],"awards":[{"id":"https://openalex.org/G5382548124","display_name":"Machine Learning Frontiers in Precision Medicine","funder_award_id":"813533","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412363123.pdf","grobid_xml":"https://content.openalex.org/works/W4412363123.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W69784543","https://openalex.org/W1831050183","https://openalex.org/W1966327575","https://openalex.org/W1966716734","https://openalex.org/W1974033269","https://openalex.org/W1978414516","https://openalex.org/W2003477935","https://openalex.org/W2025743635","https://openalex.org/W2044098745","https://openalex.org/W2048176944","https://openalex.org/W2052825782","https://openalex.org/W2097554668","https://openalex.org/W2114103087","https://openalex.org/W2122814955","https://openalex.org/W2141014056","https://openalex.org/W2156332695","https://openalex.org/W2157395790","https://openalex.org/W2205620541","https://openalex.org/W2245213139","https://openalex.org/W2536264152","https://openalex.org/W2561675875","https://openalex.org/W2576256444","https://openalex.org/W2581498230","https://openalex.org/W2593104572","https://openalex.org/W2603489941","https://openalex.org/W2608146202","https://openalex.org/W2686427836","https://openalex.org/W2731142262","https://openalex.org/W2761121567","https://openalex.org/W2883962120","https://openalex.org/W2893589556","https://openalex.org/W2911964244","https://openalex.org/W2952624934","https://openalex.org/W3102027041","https://openalex.org/W4247165325","https://openalex.org/W4249972823","https://openalex.org/W4297664336","https://openalex.org/W4378624884","https://openalex.org/W4390500913","https://openalex.org/W6602898124","https://openalex.org/W6737689805","https://openalex.org/W6869110171"],"related_works":["https://openalex.org/W2052515325","https://openalex.org/W2050948537","https://openalex.org/W2767646790","https://openalex.org/W2352041579","https://openalex.org/W1488006380","https://openalex.org/W1998176685","https://openalex.org/W2138381686","https://openalex.org/W2141585124","https://openalex.org/W3123883311","https://openalex.org/W2032175896"],"abstract_inverted_index":{"Biomarker":[0],"signature":[1,40],"discovery":[2],"remains":[3],"the":[4,13,27,30,36,43,46,70,74,109,115,124,132,135,141,157,166,171],"main":[5],"path":[6],"to":[7,25,34,123,165,206],"developing":[8],"clinical":[9],"diagnostic":[10],"tools":[11],"when":[12,99],"biological":[14],"knowledge":[15],"on":[16,42,52,69,188],"pathology":[17],"is":[18,65,83],"weak.":[19],"Shortest":[20],"signatures":[21],"are":[22],"often":[23,66],"preferred":[24],"reduce":[26],"cost":[28],"of":[29,45,56,78,143,192],"diagnostic.":[31],"The":[32,58],"ability":[33],"find":[35],"best":[37,136],"and":[38,114,170,187,202],"shortest":[39],"relies":[41],"robustness":[44],"models":[47],"that":[48,61,86,127,156],"can":[49,180],"be":[50,63,162,181,195],"built":[51],"such":[53],"a":[54,90,96],"set":[55],"molecules.":[57],"classification":[59,137,172,186],"algorithm":[60,88],"will":[62,94],"used":[64,182],"selected":[67],"based":[68],"average":[71,125,199],"Area":[72],"Under":[73],"Curve":[75],"(AUC)":[76],"performance":[77,98,201],"its":[79],"models.":[80],"However,":[81],"it":[82],"not":[84],"guaranteed":[85],"an":[87],"with":[89],"large":[91],"AUC":[92,126,200],"distribution":[93],"keep":[95],"stable":[97],"facing":[100],"data.":[101],"Here,":[102],"we":[103,146],"propose":[104],"two":[105],"AUC-derived":[106,203],"hyper-stability":[107],"scores,":[108,145],"Hyper-stability":[110,116],"Resampling":[111],"Sensitive":[112,118],"(HRS)":[113],"Signature":[117],"(HSS),":[119],"as":[120],"complementary":[121],"metrics":[122],"should":[128,161,194],"bring":[129],"confidence":[130],"in":[131],"choice":[133],"for":[134,184,197],"algorithm.":[138],"To":[139],"emphasize":[140],"importance":[142],"these":[144],"compared":[147],"15":[148],"different":[149],"Random":[150,158,177],"Forest":[151,159,178],"implementations.":[152],"Our":[153],"findings":[154],"show":[155],"implementation":[160,179],"chosen":[163],"according":[164],"data":[167],"at":[168],"hand":[169],"question":[173],"being":[174],"evaluated.":[175],"No":[176],"universally":[183],"any":[185,189],"dataset.":[190],"Each":[191],"them":[193],"tested":[196],"their":[198],"stability,":[204],"prior":[205],"analysis.":[207]},"counts_by_year":[],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
