{"id":"https://openalex.org/W4411765463","doi":"https://doi.org/10.1093/bib/bbaf303","title":"cfMethylPre: deep transfer learning enhances cancer detection based on circulating cell-free DNA methylation profiling","display_name":"cfMethylPre: deep transfer learning enhances cancer detection based on circulating cell-free DNA methylation profiling","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4411765463","doi":"https://doi.org/10.1093/bib/bbaf303","pmid":"https://pubmed.ncbi.nlm.nih.gov/40581983"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf303","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf303/63617138/bbaf303.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf303/63617138/bbaf303.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115591852","display_name":"Xuchao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Xuchao Zhang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102730078","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0003-1894-335X"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Chen","raw_affiliation_strings":["School of Computer Science and Engineering, Xi\u2019an University of Technology , No. 5 South Jinhua Road, Xi\u2019an 710018, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Xi\u2019an University of Technology , No. 5 South Jinhua Road, Xi\u2019an 710018, Shaanxi ,","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577163","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0003-2766-3106"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["Cancer Center of Zhejiang University , Hangzhou 310000, Zhejiang ,","Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine , Hangzhou 310000, Zhejiang ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Center of Zhejiang University , Hangzhou 310000, Zhejiang ,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine , Hangzhou 310000, Zhejiang ,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100333274","display_name":"Xiaofeng Wang","orcid":"https://orcid.org/0009-0006-6632-4798"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaofeng Wang","raw_affiliation_strings":["General Surgery Department, The Afliated Hospital of Northwest University, Xi\u2019an No 3 Hospital , No.5 South Jinhua Rd., Xi\u2019an 710048, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"General Surgery Department, The Afliated Hospital of Northwest University, Xi\u2019an No 3 Hospital , No.5 South Jinhua Rd., Xi\u2019an 710048, Shaanxi ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018634374","display_name":"Jialu Hu","orcid":"https://orcid.org/0000-0002-3351-8020"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Jialu Hu","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109723363","display_name":"Xuequn Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110526472","display_name":"Yanpu Wang","orcid":"https://orcid.org/0000-0001-8093-6965"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Yanpu Wang","raw_affiliation_strings":["Cancer Center of Zhejiang University , Hangzhou 310000, Zhejiang ,","Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine , Hangzhou 310000, Zhejiang ,","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Center of Zhejiang University , Hangzhou 310000, Zhejiang ,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine , Hangzhou 310000, Zhejiang ,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , 1 Dongxiang Rd., Xi\u2019an 710072, Shaanxi ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.7645,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.95734844,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7584688663482666},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7129640579223633},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.5854825973510742},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5784144401550293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5757811069488525},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5455346703529358},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4946443736553192},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47846174240112305},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.44085124135017395},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4159994125366211},{"id":"https://openalex.org/keywords/cell-free-fetal-dna","display_name":"Cell-free fetal DNA","score":0.4102139472961426},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3736635446548462},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24883997440338135},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2311510443687439},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18432804942131042},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12191596627235413},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10321986675262451},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.08333280682563782}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7584688663482666},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7129640579223633},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.5854825973510742},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5784144401550293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5757811069488525},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5455346703529358},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4946443736553192},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47846174240112305},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.44085124135017395},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4159994125366211},{"id":"https://openalex.org/C152110520","wikidata":"https://www.wikidata.org/wiki/Q14225730","display_name":"Cell-free fetal DNA","level":5,"score":0.4102139472961426},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3736635446548462},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24883997440338135},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2311510443687439},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18432804942131042},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12191596627235413},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10321986675262451},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.08333280682563782},{"id":"https://openalex.org/C2778258057","wikidata":"https://www.wikidata.org/wiki/Q1136569","display_name":"Prenatal diagnosis","level":4,"score":0.0},{"id":"https://openalex.org/C172680121","wikidata":"https://www.wikidata.org/wiki/Q26513","display_name":"Fetus","level":3,"score":0.0},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf303","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf303/63617138/bbaf303.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40581983","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40581983","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11013607","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12206449","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf303","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf303/63617138/bbaf303.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3128057212","display_name":null,"funder_award_id":"62102319","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3543428437","display_name":null,"funder_award_id":"62402382","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4498975609","display_name":null,"funder_award_id":"82303726","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325627","display_name":"Education Department of Shaanxi Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411765463.pdf","grobid_xml":"https://content.openalex.org/works/W4411765463.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W223909586","https://openalex.org/W1488814076","https://openalex.org/W1974747095","https://openalex.org/W2001782090","https://openalex.org/W2031961940","https://openalex.org/W2035618305","https://openalex.org/W2079846977","https://openalex.org/W2103017472","https://openalex.org/W2114843025","https://openalex.org/W2117692326","https://openalex.org/W2152656267","https://openalex.org/W2158485828","https://openalex.org/W2332695910","https://openalex.org/W2515727304","https://openalex.org/W2533464141","https://openalex.org/W2616284760","https://openalex.org/W2727420541","https://openalex.org/W2783537951","https://openalex.org/W2797121391","https://openalex.org/W2883870906","https://openalex.org/W2899540665","https://openalex.org/W2909576544","https://openalex.org/W2911964244","https://openalex.org/W2963149653","https://openalex.org/W2996170991","https://openalex.org/W3011641611","https://openalex.org/W3122927608","https://openalex.org/W3162350134","https://openalex.org/W3186318400","https://openalex.org/W3198511950","https://openalex.org/W4283385881","https://openalex.org/W4291271057","https://openalex.org/W4293866606","https://openalex.org/W4307374479","https://openalex.org/W4313261772","https://openalex.org/W4313650905","https://openalex.org/W4327550249","https://openalex.org/W4365478912","https://openalex.org/W4380685998","https://openalex.org/W4386168688","https://openalex.org/W4386763052","https://openalex.org/W4387139558","https://openalex.org/W4390793865","https://openalex.org/W4391219445","https://openalex.org/W4391529870","https://openalex.org/W4392089907","https://openalex.org/W4393935425","https://openalex.org/W4400031530","https://openalex.org/W4401954290","https://openalex.org/W4402384162","https://openalex.org/W4402574048","https://openalex.org/W4403117809","https://openalex.org/W4404375915","https://openalex.org/W4406047468","https://openalex.org/W6748816842"],"related_works":["https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W1998349112","https://openalex.org/W2054863651","https://openalex.org/W2887851388"],"abstract_inverted_index":{"Cancer":[0],"remains":[1],"a":[2,31,54,66,154,162,202],"significant":[3],"global":[4],"health":[5],"burden,":[6],"underscoring":[7],"the":[8,45,214],"need":[9],"for":[10,34,73,207,216],"innovative":[11],"diagnostic":[12],"tools":[13],"to":[14,97,135],"enable":[15],"early":[16],"detection":[17,75],"and":[18,53,91,120,161,170,182,190,204,210],"improve":[19],"patient":[20],"outcomes.":[21],"While":[22],"circulating":[23],"cell-free":[24],"DNA":[25,88,110],"(cfDNA)":[26],"methylation":[27,48,78,95,111,128],"has":[28],"emerged":[29],"as":[30,201],"promising":[32],"biomarker":[33],"noninvasive":[35],"cancer":[36,74,118,179,194,208],"diagnostics,":[37],"existing":[38],"methods":[39],"often":[40],"face":[41],"limitations":[42],"in":[43,192,219],"handling":[44],"high-dimensionality":[46],"of":[47,56,159,165],"data,":[49],"small":[50],"sample":[51],"sizes,":[52],"lack":[55],"biological":[57,171,211],"interpretability.":[58],"To":[59],"address":[60],"these":[61],"challenges,":[62],"we":[63,174],"propose":[64],"cfMethylPre,":[65],"novel":[67,177],"deep":[68,102],"transfer":[69,103],"learning":[70,104],"framework":[71],"tailored":[72],"using":[76],"cfDNA":[77,127],"data.":[79,129],"cfMethylPre":[80,200],"leverages":[81],"large":[82],"language":[83],"model":[84,144,168],"pretrained":[85],"embeddings":[86],"from":[87],"sequence":[89],"information":[90],"integrates":[92],"them":[93],"with":[94,126,150,153],"profiles":[96],"enhance":[98],"feature":[99],"representation.":[100],"The":[101],"process":[105],"involves":[106],"pretraining":[107],"on":[108,187],"bulk":[109],"data":[112],"encompassing":[113],"2801":[114],"samples":[115],"across":[116],"82":[117],"types":[119],"normal":[121],"controls,":[122],"followed":[123],"by":[124],"fine-tuning":[125],"This":[130],"approach":[131],"ensures":[132],"robust":[133],"adaptation":[134],"cfDNA's":[136],"unique":[137],"characteristics":[138],"while":[139],"improving":[140],"predictive":[141,147],"accuracy.":[142],"Our":[143],"achieved":[145],"superior":[146],"accuracy":[148],"compared":[149],"state-of-the-art":[151],"methods,":[152],"weighted":[155,163],"Matthews":[156],"Correlation":[157],"Coefficient":[158],"0.926":[160],"F1-score":[164],"0.942.":[166],"Through":[167],"interpretation":[169],"experimental":[172],"validation,":[173],"identified":[175],"three":[176],"breast":[178,193],"genes-PCDHA10,":[180],"PRICKLE2,":[181],"PRTG-demonstrating":[183],"their":[184],"inhibitory":[185],"effects":[186],"cell":[188,195],"proliferation":[189],"migration":[191],"lines.":[196],"These":[197],"findings":[198],"establish":[199],"powerful":[203],"interpretable":[205],"tool":[206],"diagnostics":[209],"discovery,":[212],"paving":[213],"way":[215],"its":[217],"application":[218],"precision":[220],"oncology.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
