{"id":"https://openalex.org/W4412017628","doi":"https://doi.org/10.1093/bib/bbaf302","title":"Computational methods and data resources for predicting tumor neoantigens","display_name":"Computational methods and data resources for predicting tumor neoantigens","publication_year":2025,"publication_date":"2025-06-11","ids":{"openalex":"https://openalex.org/W4412017628","doi":"https://doi.org/10.1093/bib/bbaf302","pmid":"https://pubmed.ncbi.nlm.nih.gov/40605273"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf302","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf302","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103248989","display_name":"Xiaofei Zhao","orcid":"https://orcid.org/0000-0002-1665-2498"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofei Zhao","raw_affiliation_strings":["MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,"],"raw_orcid":"https://orcid.org/0000-0002-1665-2498","affiliations":[{"raw_affiliation_string":"MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100634707","display_name":"Lei Wei","orcid":"https://orcid.org/0000-0002-1546-6458"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wei","raw_affiliation_strings":["MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,"],"raw_orcid":"https://orcid.org/0000-0002-1546-6458","affiliations":[{"raw_affiliation_string":"MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081242795","display_name":"Xuegong Zhang","orcid":"https://orcid.org/0000-0002-9684-5643"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuegong Zhang","raw_affiliation_strings":["MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,","School of Life Sciences and School of Medicine, Tsinghua University , Beijing 100084 ,"],"raw_orcid":"https://orcid.org/0000-0002-9684-5643","affiliations":[{"raw_affiliation_string":"MOE Key Lab of Bioinformatics, Bioinformatics Division of BNRIST and Department of Automation, Tsinghua University , Beijing 100084 ,","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"School of Life Sciences and School of Medicine, Tsinghua University , Beijing 100084 ,","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.3492,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.95089329,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.621171772480011},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6137199997901917},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.5365948677062988},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5248218178749084},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5143757462501526},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.5040792226791382},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4525517523288727},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.43112969398498535},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.42936956882476807},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4172844886779785},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33042287826538086},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13521909713745117},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13112837076187134},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1269373595714569}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.621171772480011},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6137199997901917},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.5365948677062988},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5248218178749084},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5143757462501526},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.5040792226791382},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4525517523288727},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.43112969398498535},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.42936956882476807},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4172844886779785},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33042287826538086},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13521909713745117},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13112837076187134},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1269373595714569},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf302","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40605273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40605273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12222050","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12222050","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf302","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7900000214576721}],"awards":[{"id":"https://openalex.org/G2984975136","display_name":null,"funder_award_id":"62373210 and 62433001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3964398962","display_name":null,"funder_award_id":"2022GXZ005806","funder_id":"https://openalex.org/F4320335564","funder_display_name":"Chinese Government Scholarship"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335564","display_name":"Chinese Government Scholarship","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":227,"referenced_works":["https://openalex.org/W1947715787","https://openalex.org/W1973714524","https://openalex.org/W1976670151","https://openalex.org/W1984068087","https://openalex.org/W1994048581","https://openalex.org/W1999574084","https://openalex.org/W2000305183","https://openalex.org/W2007026865","https://openalex.org/W2018838463","https://openalex.org/W2032518018","https://openalex.org/W2039369430","https://openalex.org/W2053931156","https://openalex.org/W2059858676","https://openalex.org/W2084266740","https://openalex.org/W2092012045","https://openalex.org/W2104549677","https://openalex.org/W2110417468","https://openalex.org/W2110574412","https://openalex.org/W2110694683","https://openalex.org/W2115392836","https://openalex.org/W2120399005","https://openalex.org/W2122732537","https://openalex.org/W2134481741","https://openalex.org/W2136957315","https://openalex.org/W2141312574","https://openalex.org/W2144871112","https://openalex.org/W2148146008","https://openalex.org/W2150056019","https://openalex.org/W2150575159","https://openalex.org/W2154509769","https://openalex.org/W2155943701","https://openalex.org/W2158485828","https://openalex.org/W2163706782","https://openalex.org/W2187048772","https://openalex.org/W2205690268","https://openalex.org/W2214699570","https://openalex.org/W2271914738","https://openalex.org/W2311949675","https://openalex.org/W2323326409","https://openalex.org/W2341128841","https://openalex.org/W2404396229","https://openalex.org/W2417483443","https://openalex.org/W2471645096","https://openalex.org/W2474747771","https://openalex.org/W2481866561","https://openalex.org/W2535013134","https://openalex.org/W2547788237","https://openalex.org/W2561541049","https://openalex.org/W2584679456","https://openalex.org/W2589139221","https://openalex.org/W2592811885","https://openalex.org/W2605177850","https://openalex.org/W2605808699","https://openalex.org/W2605820408","https://openalex.org/W2605897695","https://openalex.org/W2607938959","https://openalex.org/W2612936457","https://openalex.org/W2613978126","https://openalex.org/W2626841978","https://openalex.org/W2627026900","https://openalex.org/W2728365508","https://openalex.org/W2734098379","https://openalex.org/W2746667318","https://openalex.org/W2765745983","https://openalex.org/W2779582662","https://openalex.org/W2781173963","https://openalex.org/W2793542493","https://openalex.org/W2794000666","https://openalex.org/W2796069077","https://openalex.org/W2806574039","https://openalex.org/W2807435052","https://openalex.org/W2867868648","https://openalex.org/W2889358860","https://openalex.org/W2895452915","https://openalex.org/W2898371836","https://openalex.org/W2898389621","https://openalex.org/W2898789672","https://openalex.org/W2900127803","https://openalex.org/W2908403765","https://openalex.org/W2909834406","https://openalex.org/W2923857920","https://openalex.org/W2945153532","https://openalex.org/W2947980028","https://openalex.org/W2948058491","https://openalex.org/W2949707435","https://openalex.org/W2949949116","https://openalex.org/W2950373774","https://openalex.org/W2951959160","https://openalex.org/W2952108587","https://openalex.org/W2952187406","https://openalex.org/W2955439997","https://openalex.org/W2963605105","https://openalex.org/W2964849163","https://openalex.org/W2965921152","https://openalex.org/W2967717440","https://openalex.org/W2969359675","https://openalex.org/W2969503240","https://openalex.org/W2979330275","https://openalex.org/W2979330780","https://openalex.org/W2979882137","https://openalex.org/W2980927088","https://openalex.org/W2982476296","https://openalex.org/W2983176158","https://openalex.org/W2987502822","https://openalex.org/W2990636420","https://openalex.org/W2990871782","https://openalex.org/W2995389725","https://openalex.org/W2995494055","https://openalex.org/W2998313390","https://openalex.org/W3000174416","https://openalex.org/W3005844923","https://openalex.org/W3006653136","https://openalex.org/W3007720265","https://openalex.org/W3009999407","https://openalex.org/W3010328690","https://openalex.org/W3011549725","https://openalex.org/W3014409352","https://openalex.org/W3018554363","https://openalex.org/W3024570138","https://openalex.org/W3034309744","https://openalex.org/W3037207689","https://openalex.org/W3037875124","https://openalex.org/W3040052015","https://openalex.org/W3041524201","https://openalex.org/W3042910002","https://openalex.org/W3045142091","https://openalex.org/W3080758869","https://openalex.org/W3091991776","https://openalex.org/W3092204627","https://openalex.org/W3093142245","https://openalex.org/W3097158089","https://openalex.org/W3102312985","https://openalex.org/W3102843928","https://openalex.org/W3104435397","https://openalex.org/W3111171798","https://openalex.org/W3113525558","https://openalex.org/W3118238647","https://openalex.org/W3127841695","https://openalex.org/W3129412675","https://openalex.org/W3134347364","https://openalex.org/W3135351475","https://openalex.org/W3141438123","https://openalex.org/W3146944767","https://openalex.org/W3156645689","https://openalex.org/W3160420762","https://openalex.org/W3161684482","https://openalex.org/W3163602801","https://openalex.org/W3166730506","https://openalex.org/W3167706804","https://openalex.org/W3177500196","https://openalex.org/W3177926142","https://openalex.org/W3194810341","https://openalex.org/W3196225703","https://openalex.org/W3196626346","https://openalex.org/W3196953684","https://openalex.org/W3198942356","https://openalex.org/W3200776886","https://openalex.org/W3202248730","https://openalex.org/W3212023109","https://openalex.org/W3212743825","https://openalex.org/W3214191544","https://openalex.org/W3217248064","https://openalex.org/W4200276175","https://openalex.org/W4200382517","https://openalex.org/W4206370291","https://openalex.org/W4206792915","https://openalex.org/W4214923508","https://openalex.org/W4220824576","https://openalex.org/W4224998110","https://openalex.org/W4282937885","https://openalex.org/W4286631898","https://openalex.org/W4294203322","https://openalex.org/W4303699434","https://openalex.org/W4306406766","https://openalex.org/W4307166771","https://openalex.org/W4308461138","https://openalex.org/W4309293715","https://openalex.org/W4311619464","https://openalex.org/W4313492115","https://openalex.org/W4313547267","https://openalex.org/W4319455163","https://openalex.org/W4319748434","https://openalex.org/W4322774682","https://openalex.org/W4323320132","https://openalex.org/W4327573630","https://openalex.org/W4360752063","https://openalex.org/W4362633841","https://openalex.org/W4364378349","https://openalex.org/W4366272177","https://openalex.org/W4366595547","https://openalex.org/W4366816229","https://openalex.org/W4367550252","https://openalex.org/W4372256568","https://openalex.org/W4380538126","https://openalex.org/W4384926165","https://openalex.org/W4384934897","https://openalex.org/W4385446873","https://openalex.org/W4386463919","https://openalex.org/W4386775973","https://openalex.org/W4387256229","https://openalex.org/W4387452812","https://openalex.org/W4387865673","https://openalex.org/W4387948377","https://openalex.org/W4388843713","https://openalex.org/W4388901968","https://openalex.org/W4389504934","https://openalex.org/W4390031324","https://openalex.org/W4390345176","https://openalex.org/W4390505278","https://openalex.org/W4390578258","https://openalex.org/W4390938319","https://openalex.org/W4391097209","https://openalex.org/W4391301864","https://openalex.org/W4391758650","https://openalex.org/W4394728974","https://openalex.org/W4394739304","https://openalex.org/W4394786758","https://openalex.org/W4396707138","https://openalex.org/W4396966226","https://openalex.org/W4399326508","https://openalex.org/W4401610529","https://openalex.org/W4401611485","https://openalex.org/W4402943203","https://openalex.org/W4403339106","https://openalex.org/W4404312450","https://openalex.org/W4406614368","https://openalex.org/W4406686696"],"related_works":["https://openalex.org/W4255048859","https://openalex.org/W3120300186","https://openalex.org/W2084831119","https://openalex.org/W4389385869","https://openalex.org/W4378635687","https://openalex.org/W2055491483","https://openalex.org/W2278124082","https://openalex.org/W2019758535","https://openalex.org/W2026305825","https://openalex.org/W2381567441"],"abstract_inverted_index":{"Neoantigens":[0],"are":[1,11,118],"tumor-specific":[2],"antigens":[3,10],"presented":[4],"exclusively":[5],"by":[6,15],"cancer":[7,37,47],"cells.":[8],"These":[9],"recognized":[12],"as":[13,35,69,71,99],"nonself":[14],"the":[16,59,72,100,113],"host":[17],"immune":[18],"system,":[19],"thereby":[20],"eliciting":[21],"an":[22],"antitumor":[23],"T-cell":[24],"response.":[25],"This":[26,56],"response":[27],"is":[28,43],"significantly":[29],"enhanced":[30],"through":[31],"neoantigen-based":[32],"immunotherapies,":[33],"such":[34],"personalized":[36],"vaccines.":[38],"The":[39,104],"repertoire":[40],"of":[41,116],"neoantigens":[42,117],"unique":[44],"to":[45],"each":[46],"patient,":[48],"necessitating":[49],"neoantigen":[50,67],"prediction":[51,76,98,115],"for":[52,66,108,112],"designing":[53],"patient-specific":[54],"immunotherapies.":[55],"review":[57],"presents":[58],"computational":[60,102],"methods":[61],"and":[62,95,111,121],"data":[63],"resources":[64],"used":[65,107],"prediction,":[68,94],"well":[70],"prediction-associated":[73],"challenges.":[74],"Neoantigen":[75],"typically":[77],"uses":[78],"human":[79],"leukocyte":[80],"antigen":[81],"typing,":[82],"RNA-seq":[83],"transcript":[84],"quantification,":[85],"somatic":[86],"variant":[87],"calling,":[88],"peptide-major":[89],"histocompatibility":[90],"complex":[91],"(pMHC)":[92],"presentation":[93],"pMHC":[96],"recognition":[97],"main":[101],"steps.":[103],"immunoinformatics":[105],"tools":[106],"these":[109],"steps":[110],"overall":[114],"systematically":[119],"summarized":[120],"detailed":[122],"in":[123],"this":[124],"review.":[125]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
