{"id":"https://openalex.org/W4411505724","doi":"https://doi.org/10.1093/bib/bbaf278","title":"GC-balanced polar codes correcting insertions, deletions and substitutions for DNA storage","display_name":"GC-balanced polar codes correcting insertions, deletions and substitutions for DNA storage","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4411505724","doi":"https://doi.org/10.1093/bib/bbaf278","pmid":"https://pubmed.ncbi.nlm.nih.gov/40536818"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf278","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf278/63527886/bbaf278.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf278/63527886/bbaf278.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100422004","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0002-1367-7593"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I4210120266","display_name":"Czech Academy of Sciences, Institute of Mathematics","ror":"https://ror.org/02tv1yf50","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210120266"]}],"countries":["CN","CZ"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["Chern Institute of Mathematics, Nankai University , 94 Weijin Road, 300071 Tianjin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chern Institute of Mathematics, Nankai University , 94 Weijin Road, 300071 Tianjin ,","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4210120266"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049269026","display_name":"Huaming Wu","orcid":"https://orcid.org/0000-0002-4761-9973"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaming Wu","raw_affiliation_strings":["Center for Applied Mathematics, Tianjin University , 92 Weijin Road, 300072 Tianjin ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Applied Mathematics, Tianjin University , 92 Weijin Road, 300072 Tianjin ,","institution_ids":["https://openalex.org/I162868743"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.9736,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74773702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9625999927520752,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4939327836036682},{"id":"https://openalex.org/keywords/polar","display_name":"Polar","score":0.4279824197292328},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42436468601226807},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4170154929161072},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37459897994995117},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30867132544517517},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1564905047416687}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4939327836036682},{"id":"https://openalex.org/C29705727","wikidata":"https://www.wikidata.org/wiki/Q294562","display_name":"Polar","level":2,"score":0.4279824197292328},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42436468601226807},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4170154929161072},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37459897994995117},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30867132544517517},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1564905047416687},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf278","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf278/63527886/bbaf278.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40536818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40536818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12204671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12204671","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf278","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf278","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf278/63527886/bbaf278.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G5675697169","display_name":null,"funder_award_id":"2020YFA0712100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411505724.pdf","grobid_xml":"https://content.openalex.org/works/W4411505724.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W2009095852","https://openalex.org/W2025383314","https://openalex.org/W2096894382","https://openalex.org/W2114487425","https://openalex.org/W2150498905","https://openalex.org/W2162980030","https://openalex.org/W2568570574","https://openalex.org/W2788257106","https://openalex.org/W2887116822","https://openalex.org/W3001660245","https://openalex.org/W3014254451","https://openalex.org/W3037026856","https://openalex.org/W3045842254","https://openalex.org/W3046046632","https://openalex.org/W3081322325","https://openalex.org/W3088792257","https://openalex.org/W3126872424","https://openalex.org/W4309669740","https://openalex.org/W4312269592","https://openalex.org/W4361987898","https://openalex.org/W4392287097","https://openalex.org/W4394997720","https://openalex.org/W4402259332","https://openalex.org/W6748375555"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"In":[0,77],"order":[1],"to":[2,32,69,122],"address":[3],"the":[4,38,42,47,64,71,111,123,130,141,148,155],"insertion,":[5],"deletion,":[6],"and":[7,21,114,134,144],"substitution":[8],"(IDS)":[9],"errors":[10,35,56,103],"inherent":[11],"in":[12,54,104,153],"deoxyribonucleic":[13],"acid":[14],"(DNA)":[15],"storage":[16,44,159],"channels":[17],"during":[18],"DNA":[19,43,66,97,105,158],"synthesis":[20],"sequencing,":[22],"we":[23,80],"propose":[24],"a":[25,58,82],"novel":[26],"GC-balanced":[27,83],"polar":[28,48,84,94],"code":[29,49,85,95,124,142],"scheme":[30,86],"tailored":[31],"rectify":[33],"these":[34],"by":[36],"incorporating":[37],"unique":[39],"characteristics":[40],"of":[41,73,110,140,150,157],"channel":[45],"into":[46],"design.":[50],"The":[51,107],"innovation":[52],"lies":[53],"modeling":[55],"as":[57,138],"drift":[59],"vector,":[60],"reflecting":[61],"deviations":[62],"from":[63],"desired":[65],"sequence,":[67],"aiming":[68],"improve":[70],"reliability":[72],"DNA-based":[74],"data":[75],"storage.":[76,106],"this":[78],"paper,":[79],"developed":[81],"named":[87],"DNA-BP":[88],"Code,":[89],"which":[90],"stands":[91],"for":[92,96],"balanced":[93],"storage,":[98],"that":[99],"effectively":[100],"rectifies":[101],"IDS":[102,145],"computational":[108],"complexity":[109],"proposed":[112],"encoding":[113],"decoding":[115],"algorithms":[116],"is":[117],"$\\mathcal{O}(N\\log":[118],"N)$":[119],"with":[120],"respect":[121],"length":[125,143],"$N$.":[126],"Simulation":[127],"results":[128],"show":[129],"bit":[131],"error":[132,136],"rate":[133,137],"block":[135],"functions":[139],"probability,":[146],"demonstrating":[147],"efficacy":[149],"our":[151],"approach":[152],"enhancing":[154],"accuracy":[156],"systems.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
