{"id":"https://openalex.org/W4411325306","doi":"https://doi.org/10.1093/bib/bbaf272","title":"KansformerEPI: a deep learning framework integrating KAN and transformer for predicting enhancer\u2013promoter interactions","display_name":"KansformerEPI: a deep learning framework integrating KAN and transformer for predicting enhancer\u2013promoter interactions","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4411325306","doi":"https://doi.org/10.1093/bib/bbaf272","pmid":"https://pubmed.ncbi.nlm.nih.gov/40515390"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf272","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf272","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100671125","display_name":"Tianjiao Zhang","orcid":"https://orcid.org/0000-0001-9807-8620"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianjiao Zhang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":"https://orcid.org/0000-0001-9807-8620","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Saihong Shao","orcid":"https://orcid.org/0009-0001-5480-9118"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Saihong Shao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":"https://orcid.org/0009-0001-5480-9118","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100730590","display_name":"Hongfei Zhang","orcid":"https://orcid.org/0000-0002-1463-9070"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Zhang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036430802","display_name":"Zhongqian Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongqian Zhao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":"https://orcid.org/0009-0006-6754-7109","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016117983","display_name":"Xingjie Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingjie Zhao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiang Zhang","orcid":"https://orcid.org/0009-0000-2663-3672"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Zhang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":"https://orcid.org/0009-0000-2663-3672","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402722","display_name":"Zhenxing Wang","orcid":"https://orcid.org/0000-0001-5083-0975"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenxing Wang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100649978","display_name":"Guohua Wang","orcid":"https://orcid.org/0000-0001-7381-2374"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohua Wang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","Faculty of Computing, Harbin Institute of Technology , No. 92 West Da Zhi street, Nangang District, Harbin 150001 ,"],"raw_orcid":"https://orcid.org/0000-0001-7381-2374","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Xiangfang District, Harbin 150040 ,","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"Faculty of Computing, Harbin Institute of Technology , No. 92 West Da Zhi street, Nangang District, Harbin 150001 ,","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.9736,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74640789,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.8461124897003174},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6269832849502563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5110527276992798},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5005507469177246},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43481916189193726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27132824063301086},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.1818704605102539},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18098214268684387},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.16242879629135132},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1554475724697113},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.08064430952072144}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.8461124897003174},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6269832849502563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5110527276992798},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5005507469177246},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43481916189193726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27132824063301086},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.1818704605102539},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18098214268684387},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.16242879629135132},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1554475724697113},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.08064430952072144},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf272","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40515390","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40515390","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:10976811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12165831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf272","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3391339377","display_name":null,"funder_award_id":"62225109","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6890957027","display_name":null,"funder_award_id":"62172087","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1973062929","https://openalex.org/W1973064777","https://openalex.org/W1985621639","https://openalex.org/W1987371782","https://openalex.org/W1991740019","https://openalex.org/W1999532833","https://openalex.org/W2061620126","https://openalex.org/W2070021921","https://openalex.org/W2083073732","https://openalex.org/W2131186458","https://openalex.org/W2136170142","https://openalex.org/W2159164310","https://openalex.org/W2333286569","https://openalex.org/W2386945208","https://openalex.org/W2768844315","https://openalex.org/W2772751932","https://openalex.org/W2899151115","https://openalex.org/W2911079020","https://openalex.org/W2951218167","https://openalex.org/W2968830255","https://openalex.org/W2989837622","https://openalex.org/W3002247544","https://openalex.org/W3019163011","https://openalex.org/W3037015477","https://openalex.org/W3093812284","https://openalex.org/W3197364483","https://openalex.org/W4205731547","https://openalex.org/W4311021178","https://openalex.org/W4379981276","https://openalex.org/W4385245566","https://openalex.org/W4396821501","https://openalex.org/W4401470439","https://openalex.org/W4401908516","https://openalex.org/W4404698761","https://openalex.org/W4410795420","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2113330652","https://openalex.org/W2061914098","https://openalex.org/W4393004084","https://openalex.org/W2152841149","https://openalex.org/W2586783543","https://openalex.org/W4387598842","https://openalex.org/W2973036402"],"abstract_inverted_index":{"Enhancer-promoter":[0],"interaction":[1],"(EPI)":[2],"is":[3,110,167],"a":[4,61,67,98,163],"critical":[5],"component":[6],"of":[7,21,37,53,139,154,197],"gene":[8],"regulation.":[9],"Accurately":[10],"predicting":[11,58],"EPIs":[12,59,140],"across":[13,141,200],"diverse":[14],"cell":[15,63,72,106,143],"types":[16],"can":[17],"advance":[18],"our":[19,165],"understanding":[20],"the":[22,33,82,123,148,152],"molecular":[23],"mechanisms":[24],"behind":[25],"transcriptional":[26],"regulation":[27],"and":[28,35,65,119,129,190,195,206],"provide":[29],"valuable":[30],"insights":[31],"into":[32],"onset":[34],"progression":[36],"related":[38],"diseases.":[39],"At":[40],"present,":[41],"large-scale":[42],"genome-wide":[43],"EPI":[44,100,198],"predictions":[45,199],"typically":[46],"rely":[47],"on":[48,57,112,175],"computational":[49],"approaches.":[50],"However,":[51],"most":[52],"these":[54],"methods":[55,185],"focus":[56],"within":[60],"single":[62],"line":[64],"lack":[66],"global":[68,99],"perspective":[69],"encompassing":[70],"multiple":[71,105],"lines.":[73,107],"Furthermore,":[74],"they":[75],"often":[76],"fail":[77],"to":[78,88,135,169],"fully":[79],"account":[80],"for":[81,104,159],"nonlinear":[83,124],"relationships":[84,125],"between":[85],"features,":[86],"leading":[87],"suboptimal":[89],"prediction":[90,101,138,157],"accuracy.":[91],"In":[92],"this":[93],"study,":[94],"we":[95],"propose":[96],"KansformerEPI,":[97],"model":[102,109,166],"designed":[103],"The":[108],"built":[111],"Kansformer,":[113],"an":[114],"encoder":[115],"that":[116,181],"integrates":[117],"KAN":[118],"Transformer,":[120],"effectively":[121],"capturing":[122],"among":[126],"various":[127,170],"epigenetic":[128],"sequence":[130],"features.":[131],"We":[132],"utilized":[133],"KansformerEPI":[134,182],"achieve":[136],"cross-tissue":[137],"different":[142],"types.":[144],"This":[145],"approach":[146],"enhances":[147],"model's":[149],"scalability,":[150],"eliminating":[151],"complexity":[153],"designing":[155],"separate":[156],"models":[158],"individual":[160],"tissues.":[161],"As":[162],"result,":[164],"applicable":[168],"tissues,":[171],"thereby":[172],"reducing":[173],"dependency":[174],"extensive":[176],"datasets.":[177],"Experimental":[178],"results":[179],"demonstrate":[180],"surpasses":[183],"existing":[184],"such":[186],"as":[187],"TransEPI,":[188],"TargetFinder,":[189],"SPEID":[191],"in":[192],"both":[193],"accuracy":[194],"stability":[196],"datasets":[201],"including":[202],"HMEC,":[203],"IMR90,":[204],"K562,":[205],"NHEK.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
