{"id":"https://openalex.org/W4411112544","doi":"https://doi.org/10.1093/bib/bbaf259","title":"KinaseFusionDB: an integrative knowledge of kinase fusion proteins in multi-scales","display_name":"KinaseFusionDB: an integrative knowledge of kinase fusion proteins in multi-scales","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4411112544","doi":"https://doi.org/10.1093/bib/bbaf259","pmid":"https://pubmed.ncbi.nlm.nih.gov/40471992"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf259","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf259/63441682/bbaf259.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf259/63441682/bbaf259.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058345145","display_name":"Himansu Kumar","orcid":"https://orcid.org/0000-0002-4335-4517"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Himansu Kumar","raw_affiliation_strings":["Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102985691","display_name":"Zikang Chen","orcid":"https://orcid.org/0009-0003-0546-5798"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zikang Chen","raw_affiliation_strings":["Department of Computer Science, Rice University , 6100 Main St, Houston, TX 77005 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University , 6100 Main St, Houston, TX 77005 ,","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105018707","display_name":"Abayomi Adegunlehin","orcid":"https://orcid.org/0000-0001-7250-4062"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abayomi Adegunlehin","raw_affiliation_strings":["Department of Health Data Science and Artificial Intelligence, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Data Science and Artificial Intelligence, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117862248","display_name":"Loren Trowbridge","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Loren Trowbridge","raw_affiliation_strings":["Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060115977","display_name":"Leonardo Aguilar","orcid":"https://orcid.org/0000-0002-0015-534X"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonardo Aguilar","raw_affiliation_strings":["Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014102611","display_name":"Pora Kim","orcid":"https://orcid.org/0000-0002-8321-6864"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pora Kim","raw_affiliation_strings":["Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Medicine, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston , 7000 Fannin St., Houston, TX 77030 ,","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014102611"],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07586859,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6978661417961121},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.5952032804489136},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5889664888381958},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.546619713306427},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5338194370269775},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.49406197667121887},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4397372603416443},{"id":"https://openalex.org/keywords/fusion-gene","display_name":"Fusion gene","score":0.4285229742527008},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.4264410138130188},{"id":"https://openalex.org/keywords/fusion-protein","display_name":"Fusion protein","score":0.42635494470596313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4031546711921692},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38578474521636963},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.3253564238548279},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27646899223327637},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.20864954590797424},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.18567726016044617}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6978661417961121},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.5952032804489136},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5889664888381958},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.546619713306427},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5338194370269775},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.49406197667121887},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4397372603416443},{"id":"https://openalex.org/C111829193","wikidata":"https://www.wikidata.org/wiki/Q1108970","display_name":"Fusion gene","level":3,"score":0.4285229742527008},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.4264410138130188},{"id":"https://openalex.org/C123894998","wikidata":"https://www.wikidata.org/wiki/Q425158","display_name":"Fusion protein","level":4,"score":0.42635494470596313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4031546711921692},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38578474521636963},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.3253564238548279},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27646899223327637},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.20864954590797424},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.18567726016044617},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf259","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf259/63441682/bbaf259.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40471992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40471992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1652","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/663","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12140011","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12140011","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf259","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf259/63441682/bbaf259.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5807566396","display_name":null,"funder_award_id":"R35GM138184","funder_id":"https://openalex.org/F4320313675","funder_display_name":"University of Texas Health Science Center at Houston"},{"id":"https://openalex.org/G797813585","display_name":"Functional annotation of new genes aided by deep learning","funder_award_id":"5r35gm138184-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320313675","display_name":"University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411112544.pdf","grobid_xml":"https://content.openalex.org/works/W4411112544.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1423001511","https://openalex.org/W1970174659","https://openalex.org/W1977344200","https://openalex.org/W1985588649","https://openalex.org/W2009423060","https://openalex.org/W2016086822","https://openalex.org/W2016676172","https://openalex.org/W2023568503","https://openalex.org/W2025458374","https://openalex.org/W2030205108","https://openalex.org/W2031168104","https://openalex.org/W2039233888","https://openalex.org/W2053343049","https://openalex.org/W2055402151","https://openalex.org/W2077804275","https://openalex.org/W2079953901","https://openalex.org/W2095724872","https://openalex.org/W2102377211","https://openalex.org/W2106612397","https://openalex.org/W2116147664","https://openalex.org/W2121149237","https://openalex.org/W2132629607","https://openalex.org/W2132775653","https://openalex.org/W2140155134","https://openalex.org/W2158026056","https://openalex.org/W2164242115","https://openalex.org/W2168783124","https://openalex.org/W2176516200","https://openalex.org/W2225513621","https://openalex.org/W2234465598","https://openalex.org/W2537679995","https://openalex.org/W2580750923","https://openalex.org/W2585022678","https://openalex.org/W2594201108","https://openalex.org/W2600182475","https://openalex.org/W2767891136","https://openalex.org/W2794211762","https://openalex.org/W2794930605","https://openalex.org/W2796292093","https://openalex.org/W2797137144","https://openalex.org/W2894476389","https://openalex.org/W2899950333","https://openalex.org/W2914992819","https://openalex.org/W2944727022","https://openalex.org/W3027750869","https://openalex.org/W3096333766","https://openalex.org/W3118580223","https://openalex.org/W3135642867","https://openalex.org/W3136918052","https://openalex.org/W3159719254","https://openalex.org/W3161074857","https://openalex.org/W3177828909","https://openalex.org/W3189949217","https://openalex.org/W3214538404","https://openalex.org/W4233120011","https://openalex.org/W4239372721","https://openalex.org/W4243585190","https://openalex.org/W4282599625","https://openalex.org/W4283384687","https://openalex.org/W4291184281","https://openalex.org/W4309506674","https://openalex.org/W4311125416","https://openalex.org/W4367183963","https://openalex.org/W4387865538","https://openalex.org/W4390501271","https://openalex.org/W4390621251","https://openalex.org/W4399578444","https://openalex.org/W4401241298","https://openalex.org/W4403205338"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"Kinase":[0,16],"fusion":[1,7,46,80,115,119,169,189],"genes":[2],"were":[3],"the":[4,27,33,42,194],"most":[5,142],"targeted":[6],"gene":[8,14],"group":[9],"among":[10],"multiple":[11],"major":[12],"cellular":[13],"groups.":[15],"inhibitors":[17,40],"disrupt":[18],"aberrant":[19],"signaling":[20],"cascades":[21],"and":[22,36,60,82,93,130,177,192,198],"inhibit":[23],"tumor":[24],"progression,":[25],"yet":[26],"specific":[28],"mechanisms":[29],"of":[30,32,44,78,112,196],"action":[31],"U.S.":[34],"Food":[35],"Drug":[37],"Administration":[38],"(FDA)-approved":[39],"in":[41,71,168],"context":[43],"kinase":[45,62,79,98,114,136,153,188,200],"oncoproteins":[47],"remain":[48],"largely":[49],"unknown.":[50],"This":[51,87],"gap":[52],"limits":[53],"our":[54],"ability":[55],"to":[56],"develop":[57],"personalized":[58,197],"therapies":[59],"next-generation":[61,199],"inhibitors.":[63,137],"To":[64],"address":[65],"this,":[66],"we":[67],"developed":[68],"a":[69,106,183],"novel":[70],"silico":[72],"pipeline":[73],"for":[74,186],"predicting":[75],"3D":[76],"structures":[77,144],"proteins":[81],"performing":[83],"structure-based":[84],"virtual":[85,131],"screening.":[86],"approach":[88],"enables":[89],"large-scale":[90],"structural":[91,164],"annotation":[92,111],"drug":[94],"screening":[95,132,172],"across":[96],"pan-cancer":[97],"fusions.":[99],"We":[100],"present":[101],"KinaseFusionDB,":[102],"available":[103],"at":[104],"https://compbio.uth.edu/KinaseFusionDB,":[105],"comprehensive":[107],"knowledgebase":[108],"providing":[109],"functional":[110],"7680":[113],"genes,":[116],"1399":[117],"predicted":[118,122,143],"protein":[120],"structures,":[121],"Local":[123],"Distance":[124],"Difference":[125],"Test":[126],"(pLDDT)-based":[127],"confidence":[128],"scoring,":[129],"data":[133],"using":[134],"FDA-approved":[135],"Our":[138],"analysis":[139],"revealed":[140],"that":[141],"showed":[145],"high":[146],"pLDDT":[147],"scores":[148],"(pLDDT":[149],">70)":[150],"within":[151],"conserved":[152],"domains.":[154],"Structural":[155],"alignment":[156],"with":[157],"known":[158],"Protein":[159],"Data":[160],"Banks":[161],"demonstrated":[162],"shared":[163],"motifs":[165],"despite":[166],"variation":[167],"breakpoints.":[170],"Virtual":[171],"results":[173],"highlighted":[174],"repurposing":[175],"opportunities":[176],"isoform-specific":[178],"binding":[179],"preferences.":[180],"KinaseFusionDB":[181],"is":[182],"valuable":[184],"resource":[185],"investigating":[187],"structure-function":[190],"relationships":[191],"guiding":[193],"design":[195],"inhibitor":[201],"therapies.":[202]},"counts_by_year":[],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
