{"id":"https://openalex.org/W4410934553","doi":"https://doi.org/10.1093/bib/bbaf249","title":"EDS-Kcr: deep supervision based on large language model for identifying protein lysine crotonylation sites across multiple species","display_name":"EDS-Kcr: deep supervision based on large language model for identifying protein lysine crotonylation sites across multiple species","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410934553","doi":"https://doi.org/10.1093/bib/bbaf249","pmid":"https://pubmed.ncbi.nlm.nih.gov/40452145"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf249","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100671915","display_name":"Hongqi Zhang","orcid":"https://orcid.org/0000-0003-4316-9378"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hong-Qi Zhang","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110928691","display_name":"Xinran Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin-Ran Lin","raw_affiliation_strings":["School of Medicine, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Medicine, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100665415","display_name":"Yanting Wang","orcid":"https://orcid.org/0000-0003-3118-9929"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan-Ting Wang","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043138592","display_name":"Pei Wei","orcid":"https://orcid.org/0000-0001-5706-1603"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen-Fang Pei","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113828809","display_name":"Guangtian Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guang-Ji Ma","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045810897","display_name":"Z. Hong Zhou","orcid":"https://orcid.org/0000-0002-8373-4717"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ze-Xu Zhou","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021812514","display_name":"Kejun Deng","orcid":"https://orcid.org/0000-0003-0411-549X"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke-Jun Deng","raw_affiliation_strings":["School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology and Center for Informational Biology, University of Electronic Science and Technology of China , No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 610054 ,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101852364","display_name":"Dan Yan","orcid":"https://orcid.org/0000-0003-2985-3798"},"institutions":[{"id":"https://openalex.org/I4210147433","display_name":"Beijing Friendship Hospital","ror":"https://ror.org/053qy4437","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210147433"]},{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Yan","raw_affiliation_strings":["Beijing Institute of Clinical Pharmacy, Beijing Friendship Hospital, Capital Medical University , No. 13 Shuiche Hutong, Xicheng District, Beijing 100050 ,"],"affiliations":[{"raw_affiliation_string":"Beijing Institute of Clinical Pharmacy, Beijing Friendship Hospital, Capital Medical University , No. 13 Shuiche Hutong, Xicheng District, Beijing 100050 ,","institution_ids":["https://openalex.org/I4210147433","https://openalex.org/I183519381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101545938","display_name":"Tianyuan Liu","orcid":"https://orcid.org/0000-0001-7367-8128"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tian-Yuan Liu","raw_affiliation_strings":["Tsukuba Life Science Innovation Program, University of Tsukuba , 1-1-1 Tennodai, Tsukuba 3058577 ,"],"affiliations":[{"raw_affiliation_string":"Tsukuba Life Science Innovation Program, University of Tsukuba , 1-1-1 Tennodai, Tsukuba 3058577 ,","institution_ids":["https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100671915"],"corresponding_institution_ids":["https://openalex.org/I150229711"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13446452,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9298330545425415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7090838551521301},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5031833052635193},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4758065342903137},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.4719226360321045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42326992750167847},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37958455085754395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17751434445381165},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08325198292732239}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9298330545425415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7090838551521301},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5031833052635193},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4758065342903137},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.4719226360321045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42326992750167847},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37958455085754395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17751434445381165},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08325198292732239},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40452145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40452145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12127148","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12127148","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf249","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4345713327","display_name":null,"funder_award_id":"62372090","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6139720365","display_name":null,"funder_award_id":"82130112","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1594587862","https://openalex.org/W2115862579","https://openalex.org/W2590067952","https://openalex.org/W2593128459","https://openalex.org/W2606879989","https://openalex.org/W2621036017","https://openalex.org/W2748860630","https://openalex.org/W2793883682","https://openalex.org/W2810876096","https://openalex.org/W2883294189","https://openalex.org/W2922515669","https://openalex.org/W2947059931","https://openalex.org/W2971719780","https://openalex.org/W2972211546","https://openalex.org/W2972223935","https://openalex.org/W2980767508","https://openalex.org/W3040868792","https://openalex.org/W3043901899","https://openalex.org/W3048991675","https://openalex.org/W3094567318","https://openalex.org/W3112889838","https://openalex.org/W3155214885","https://openalex.org/W3201845115","https://openalex.org/W3217466685","https://openalex.org/W4200111237","https://openalex.org/W4205848861","https://openalex.org/W4224243422","https://openalex.org/W4225375620","https://openalex.org/W4244364296","https://openalex.org/W4282961683","https://openalex.org/W4293217134","https://openalex.org/W4315865958","https://openalex.org/W4321003857","https://openalex.org/W4321015480","https://openalex.org/W4322616457","https://openalex.org/W4353041376","https://openalex.org/W4366528133","https://openalex.org/W4366778915","https://openalex.org/W4366826010","https://openalex.org/W4379876549","https://openalex.org/W4381660925","https://openalex.org/W4386083759","https://openalex.org/W4386147223","https://openalex.org/W4386439087","https://openalex.org/W4388080288","https://openalex.org/W4388571136","https://openalex.org/W4388776996","https://openalex.org/W4390678101","https://openalex.org/W4390946589","https://openalex.org/W4392559948","https://openalex.org/W4392563246","https://openalex.org/W4399421402","https://openalex.org/W4399561131","https://openalex.org/W4400061043","https://openalex.org/W4400416450","https://openalex.org/W4403782367","https://openalex.org/W4404045876"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W2809283485","https://openalex.org/W4293768783","https://openalex.org/W4288347394"],"abstract_inverted_index":{"With":[0],"the":[1,51,62,119,133],"rapid":[2],"advancement":[3],"of":[4,66,85,123],"proteomics,":[5],"post-translational":[6],"modifications,":[7],"particularly":[8],"lysine":[9],"crotonylation":[10],"(Kcr),":[11],"have":[12,42,151],"gained":[13],"significant":[14],"attention":[15,129],"in":[16,105],"basic":[17],"research,":[18],"drug":[19,148],"development,":[20],"and":[21,35,64,93,114,121,128,139,147],"disease":[22,145],"treatment.":[23],"However,":[24],"current":[25],"methods":[26],"for":[27,144,159],"identifying":[28],"these":[29,39],"modifications":[30],"are":[31],"often":[32],"complex,":[33],"costly,":[34],"time-consuming.":[36],"To":[37],"address":[38],"challenges,":[40],"we":[41,117],"proposed":[43],"EDS-Kcr,":[44],"a":[45,82,154],"novel":[46],"bioinformatics":[47],"tool":[48,142],"that":[49],"integrates":[50],"state-of-the-art":[52],"protein":[53],"language":[54],"model":[55,103,135],"ESM2":[56],"with":[57],"deep":[58],"supervision":[59],"to":[60,81,96],"improve":[61],"efficiency":[63],"accuracy":[65],"Kcr":[67,98],"site":[68,99],"prediction.":[69],"EDS-Kcr":[70,124,134,160],"demonstrated":[71],"outstanding":[72],"performance":[73,108],"across":[74],"various":[75],"species":[76],"datasets,":[77],"proving":[78],"its":[79],"applicability":[80],"wide":[83],"range":[84],"proteins,":[86],"including":[87],"those":[88],"from":[89],"humans,":[90],"plants,":[91],"animals,":[92],"microbes.":[94],"Compared":[95],"existing":[97],"prediction":[100],"models,":[101],"our":[102],"excelled":[104],"multiple":[106],"key":[107],"indicators,":[109],"showcasing":[110],"superior":[111],"predictive":[112,141],"power":[113],"robustness.":[115],"Furthermore,":[116],"enhanced":[118],"transparency":[120],"interpretability":[122],"through":[125],"visualization":[126],"techniques":[127],"mechanisms.":[130],"In":[131],"conclusion,":[132],"provides":[136],"an":[137],"efficient":[138],"reliable":[140],"suitable":[143],"diagnosis":[146],"development.":[149],"We":[150],"also":[152],"established":[153],"freely":[155],"accessible":[156],"web":[157],"server":[158],"at":[161],"http://eds-kcr.lin-group.cn/.":[162]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
