{"id":"https://openalex.org/W4412070457","doi":"https://doi.org/10.1093/bib/bbaf244","title":"scAGCI: an anchor graph-based method for cell clustering from integrated scRNA-seq and scATAC-seq data","display_name":"scAGCI: an anchor graph-based method for cell clustering from integrated scRNA-seq and scATAC-seq data","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4412070457","doi":"https://doi.org/10.1093/bib/bbaf244","pmid":"https://pubmed.ncbi.nlm.nih.gov/40622484"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf244","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf244/63688312/bbaf244.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf244/63688312/bbaf244.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006794112","display_name":"Yao Dong","orcid":"https://orcid.org/0000-0003-0994-8394"},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yao Dong","raw_affiliation_strings":["Hebei Engineering Research Center of Data-Driven Industrial Intelligent , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","Hebei Province Key Laboratory of Big Data Computing , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,"],"raw_orcid":"https://orcid.org/0000-0003-0994-8394","affiliations":[{"raw_affiliation_string":"Hebei Engineering Research Center of Data-Driven Industrial Intelligent , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":[]},{"raw_affiliation_string":"Hebei Province Key Laboratory of Big Data Computing , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":[]},{"raw_affiliation_string":"School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046657661","display_name":"Jiaxue Zhang","orcid":"https://orcid.org/0000-0001-8543-1296"},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxue Zhang","raw_affiliation_strings":["School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jin Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Shi","raw_affiliation_strings":["School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113300258","display_name":"Yushan Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yushan Hu","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road PO Box 1700 STN CSC, Victoria BC V8W 3P2 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road PO Box 1700 STN CSC, Victoria BC V8W 3P2 ,","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101442769","display_name":"Xiaowen Cao","orcid":"https://orcid.org/0000-0003-1846-050X"},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowen Cao","raw_affiliation_strings":["School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066218069","display_name":"Yongfeng Dong","orcid":"https://orcid.org/0000-0003-1126-9075"},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongfeng Dong","raw_affiliation_strings":["Hebei Engineering Research Center of Data-Driven Industrial Intelligent , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","Hebei Province Key Laboratory of Big Data Computing , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hebei Engineering Research Center of Data-Driven Industrial Intelligent , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":[]},{"raw_affiliation_string":"Hebei Province Key Laboratory of Big Data Computing , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":[]},{"raw_affiliation_string":"School of Artificial Intelligence, Hebei University of Technology , No. 5340, Xiping Road, Beichen District, Tianjin 300401 ,","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090281546","display_name":"Xuekui Zhang","orcid":"https://orcid.org/0000-0003-4728-2343"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Xuekui Zhang","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road PO Box 1700 STN CSC, Victoria BC V8W 3P2 ,"],"raw_orcid":"https://orcid.org/0000-0003-4728-2343","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Victoria , 3800 Finnerty Road PO Box 1700 STN CSC, Victoria BC V8W 3P2 ,","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.4339,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.89012499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"26","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7851020097732544},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5668708086013794},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.547172486782074},{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.544664204120636},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48112717270851135},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.47965744137763977},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42984116077423096},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41821789741516113},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2399207353591919},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20406430959701538},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.1668204963207245},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15015268325805664},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.0662071704864502}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7851020097732544},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5668708086013794},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.547172486782074},{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.544664204120636},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48112717270851135},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.47965744137763977},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42984116077423096},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41821789741516113},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2399207353591919},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20406430959701538},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.1668204963207245},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15015268325805664},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0662071704864502},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf244","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf244/63688312/bbaf244.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40622484","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40622484","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12232420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12232420","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf244","pdf_url":"https://academic.oup.com/bib/article-pdf/26/4/bbaf244/63688312/bbaf244.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6598961024","display_name":null,"funder_award_id":"23JCYBJC00790","funder_id":"https://openalex.org/F4320323993","funder_display_name":"Natural Science Foundation of Tianjin City"}],"funders":[{"id":"https://openalex.org/F4320323993","display_name":"Natural Science Foundation of Tianjin City","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412070457.pdf","grobid_xml":"https://content.openalex.org/works/W4412070457.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W2001554877","https://openalex.org/W2121845135","https://openalex.org/W2155444336","https://openalex.org/W2750049634","https://openalex.org/W2794480084","https://openalex.org/W2889236955","https://openalex.org/W2895456557","https://openalex.org/W2948469692","https://openalex.org/W2953322088","https://openalex.org/W2979911343","https://openalex.org/W2989061519","https://openalex.org/W3012788672","https://openalex.org/W3027051073","https://openalex.org/W3043558371","https://openalex.org/W3048804154","https://openalex.org/W3093858607","https://openalex.org/W3102434595","https://openalex.org/W3131971792","https://openalex.org/W3164692211","https://openalex.org/W3164736847","https://openalex.org/W3203731429","https://openalex.org/W4206092375","https://openalex.org/W4214854288","https://openalex.org/W4220905914","https://openalex.org/W4220977727","https://openalex.org/W4225278475","https://openalex.org/W4226218349","https://openalex.org/W4283067429","https://openalex.org/W4283792797","https://openalex.org/W4284962632","https://openalex.org/W4291034555","https://openalex.org/W4293237882","https://openalex.org/W4313830595","https://openalex.org/W4327683140","https://openalex.org/W4378716051","https://openalex.org/W4386316597","https://openalex.org/W4389937732","https://openalex.org/W4390636271","https://openalex.org/W4390669311","https://openalex.org/W4394743912","https://openalex.org/W4401332722","https://openalex.org/W4402700462","https://openalex.org/W4405022525","https://openalex.org/W4405516441","https://openalex.org/W4407316259","https://openalex.org/W6798008575","https://openalex.org/W6801965486","https://openalex.org/W6853686462","https://openalex.org/W6864583330"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2611629964","https://openalex.org/W2113284213"],"abstract_inverted_index":{"Single-cell":[0],"multi-omics":[1,137],"clustering":[2,33,78,98],"confronts":[3],"noise":[4,16],"and":[5,43,50,67,86,100,106,122],"heterogeneity":[6,134],"barriers.":[7],"Current":[8],"multi-view":[9],"anchor":[10,37,52,65],"graph":[11],"approaches,":[12],"though":[13],"successful":[14],"in":[15,60,103,135],"reduction,":[17],"inadequately":[18],"model":[19],"higher":[20],"order":[21],"feature":[22],"interactions.":[23],"To":[24],"address":[25],"this":[26],"issue,":[27],"we":[28],"propose":[29],"scAGCI,":[30],"a":[31,128],"cell":[32],"method":[34,47,110],"based":[35],"on":[36],"graphs":[38,53],"that":[39],"integrates":[40],"both":[41],"scRNA-seq":[42],"scATAC-seq":[44],"data.":[45,138],"Our":[46],"captures":[48],"specific":[49,85],"shared":[51,70,87],"representing":[54],"the":[55,61,74,84],"properties":[56],"of":[57,63],"omics":[58,75,88,114],"data":[59],"process":[62],"dynamic":[64],"unification,":[66],"mines":[68],"high-order":[69],"information":[71],"to":[72],"complete":[73],"representation.":[76,89],"Subsequently,":[77],"results":[79],"are":[80],"obtained":[81],"by":[82,118],"integrating":[83],"Benchmarking":[90],"against":[91],"13":[92],"state-of-the-art":[93],"methods":[94],"confirms":[95],"scAGCI's":[96],"superior":[97],"performance":[99],"computational":[101],"efficiency":[102],"cell-type":[104],"identification":[105],"subtype":[107],"resolution.":[108],"The":[109],"preserves":[111],"biologically":[112],"meaningful":[113],"patterns,":[115],"as":[116,127],"evidenced":[117],"marker":[119],"gene":[120],"enrichment":[121],"functional":[123],"analyses,":[124],"establishing":[125],"it":[126],"robust":[129],"tool":[130],"for":[131],"elucidating":[132],"cellular":[133],"single-cell":[136]},"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
