{"id":"https://openalex.org/W4410794241","doi":"https://doi.org/10.1093/bib/bbaf230","title":"MambaPhase: deep learning for liquid\u2013liquid phase separation protein classification","display_name":"MambaPhase: deep learning for liquid\u2013liquid phase separation protein classification","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410794241","doi":"https://doi.org/10.1093/bib/bbaf230","pmid":"https://pubmed.ncbi.nlm.nih.gov/40421658"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf230","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf230/63368354/bbaf230.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf230/63368354/bbaf230.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jianwei Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210105595","display_name":"Institute of Art","ror":"https://ror.org/017fyx225","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210105595","https://openalex.org/I99542240"]}],"countries":["CN","PL"],"is_corresponding":false,"raw_author_name":"Jianwei Huang","raw_affiliation_strings":["Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105595"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019503335","display_name":"Youli Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210105595","display_name":"Institute of Art","ror":"https://ror.org/017fyx225","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210105595","https://openalex.org/I99542240"]}],"countries":["CN","PL"],"is_corresponding":false,"raw_author_name":"Youli Zhang","raw_affiliation_strings":["Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105595"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081521111","display_name":"Shulin Ren","orcid":"https://orcid.org/0000-0003-0408-6246"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shulin Ren","raw_affiliation_strings":["Information and Networking Center , Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Networking Center , Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100348388","display_name":"Ziyang Wang","orcid":"https://orcid.org/0000-0002-2512-1760"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210105595","display_name":"Institute of Art","ror":"https://ror.org/017fyx225","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210105595","https://openalex.org/I99542240"]}],"countries":["CN","PL"],"is_corresponding":false,"raw_author_name":"Ziyang Wang","raw_affiliation_strings":["Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105595"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102603324","display_name":"Xiaocheng Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaocheng Jin","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045955292","display_name":"Xiaoli Lu","orcid":"https://orcid.org/0000-0003-1717-2610"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Lu","raw_affiliation_strings":["Information and Networking Center , Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Networking Center , Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100324777","display_name":"Yu Zhang","orcid":"https://orcid.org/0000-0002-4774-0183"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210105595","display_name":"Institute of Art","ror":"https://ror.org/017fyx225","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210105595","https://openalex.org/I99542240"]}],"countries":["CN","PL"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105595"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090466533","display_name":"Xiaoping Min","orcid":"https://orcid.org/0000-0002-0817-0878"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210105595","display_name":"Institute of Art","ror":"https://ror.org/017fyx225","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210105595","https://openalex.org/I99542240"]}],"countries":["CN","PL"],"is_corresponding":false,"raw_author_name":"Xiaoping Min","raw_affiliation_strings":["Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence , School of Informatics, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105595"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091912156","display_name":"Shengxiang Ge","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengxiang Ge","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433153","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-4379-3616"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053437901","display_name":"Ningshao Xia","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningshao Xia","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases , School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases , Xiang An Biomedicine Laboratory, School of Public Health, Xiamen University, No. 422 Siming South Rd, 361005, Xiamen, Fujian,","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.9207,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.90902551,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6808974742889404},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6391175389289856},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5316748023033142},{"id":"https://openalex.org/keywords/separation","display_name":"Separation (statistics)","score":0.4574635624885559},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4419020712375641},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11598074436187744}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6808974742889404},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6391175389289856},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5316748023033142},{"id":"https://openalex.org/C2776061190","wikidata":"https://www.wikidata.org/wiki/Q7451805","display_name":"Separation (statistics)","level":2,"score":0.4574635624885559},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4419020712375641},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11598074436187744},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095496","descriptor_name":"Phase Separation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf230","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf230/63368354/bbaf230.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40421658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40421658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12107247","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12107247","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf230","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf230/63368354/bbaf230.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G5570595420","display_name":null,"funder_award_id":"62272399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320328318","display_name":"Fujian Provincial Health Commission","ror":null},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4410794241.pdf"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W2051168928","https://openalex.org/W2106887764","https://openalex.org/W2111764017","https://openalex.org/W2139995722","https://openalex.org/W2170747616","https://openalex.org/W2225070830","https://openalex.org/W2425405879","https://openalex.org/W2765486298","https://openalex.org/W2786469974","https://openalex.org/W2810672236","https://openalex.org/W2810937395","https://openalex.org/W2898777420","https://openalex.org/W2903367686","https://openalex.org/W2910314419","https://openalex.org/W2954453835","https://openalex.org/W2955829592","https://openalex.org/W2963341956","https://openalex.org/W2971594646","https://openalex.org/W2991062017","https://openalex.org/W2991067665","https://openalex.org/W2999309192","https://openalex.org/W3011387478","https://openalex.org/W3011599658","https://openalex.org/W3118277457","https://openalex.org/W3168867926","https://openalex.org/W3205893516","https://openalex.org/W4205773061","https://openalex.org/W4212848381","https://openalex.org/W4220848114","https://openalex.org/W4224237633","https://openalex.org/W4248083651","https://openalex.org/W4302308043","https://openalex.org/W4320036691","https://openalex.org/W4376641445","https://openalex.org/W4386083644","https://openalex.org/W4389326242","https://openalex.org/W4390047809","https://openalex.org/W4390096274","https://openalex.org/W4392018880","https://openalex.org/W4393189158","https://openalex.org/W4393410976","https://openalex.org/W4400238700","https://openalex.org/W4401387454","https://openalex.org/W4403603440","https://openalex.org/W6800495581","https://openalex.org/W6859948102"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Liquid-liquid":[0],"phase":[1,140],"separation":[2,82],"plays":[3],"a":[4,74],"critical":[5],"role":[6],"in":[7,94,104,112,124,144],"cellular":[8],"processes,":[9],"including":[10],"protein":[11,84],"aggregation":[12],"and":[13,30,42,61,86,98,107,137,147],"RNA":[14],"metabolism,":[15],"by":[16],"forming":[17],"membraneless":[18],"subcellular":[19],"structures.":[20],"Accurate":[21],"identification":[22,35,136],"of":[23,102,139],"phase-separated":[24,96],"proteins":[25,63,97],"is":[26],"essential":[27],"for":[28,121,133],"understanding":[29],"controlling":[31],"these":[32,51],"processes.":[33],"Traditional":[34],"methods":[36,48],"are":[37,56],"effective":[38,131],"but":[39,53],"often":[40],"costly":[41],"time-consuming.":[43],"The":[44],"recent":[45],"machine":[46],"learning":[47,79],"have":[49],"reduced":[50],"costs,":[52],"most":[54],"models":[55],"restricted":[57],"to":[58],"classifying":[59,105],"scaffold":[60,106],"client":[62,108],"with":[64],"limited":[65],"experimental":[66,87],"conditions.":[67,88],"To":[68],"address":[69],"this":[70],"limitation,":[71],"we":[72],"developed":[73],"Mamba-based":[75],"encoder":[76],"using":[77],"contrastive":[78],"that":[80],"incorporates":[81],"probability,":[83],"type,":[85],"Our":[89],"model":[90],"achieved":[91],"95.2%":[92],"accuracy":[93],"predicting":[95],"an":[99,130],"ROCAUC":[100],"score":[101],"0.87":[103],"proteins.":[109],"Further":[110],"validation":[111],"the":[113,134],"DgHBP-2":[114],"drug":[115,125],"delivery":[116],"system":[117],"demonstrated":[118],"its":[119],"potential":[120],"condition":[122],"modulation":[123],"development.":[126],"This":[127],"study":[128],"provides":[129],"framework":[132],"accurate":[135],"control":[138],"separation,":[141],"facilitating":[142],"advancements":[143],"biomedical":[145],"research":[146],"therapeutic":[148],"applications.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
