{"id":"https://openalex.org/W4410510686","doi":"https://doi.org/10.1093/bib/bbaf224","title":"VirNucPro: an identifier for the identification of viral short sequences using six-frame translation and large language models","display_name":"VirNucPro: an identifier for the identification of viral short sequences using six-frame translation and large language models","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410510686","doi":"https://doi.org/10.1093/bib/bbaf224","pmid":"https://pubmed.ncbi.nlm.nih.gov/40387494"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf224","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf224/63233428/bbaf224.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf224/63233428/bbaf224.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100337095","display_name":"Jing Li","orcid":"https://orcid.org/0000-0003-3060-2531"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Li","raw_affiliation_strings":["The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":"https://orcid.org/0000-0003-3060-2531","affiliations":[{"raw_affiliation_string":"The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]},{"raw_affiliation_string":"The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052439365","display_name":"Jia Mi","orcid":"https://orcid.org/0000-0002-9393-4288"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia Mi","raw_affiliation_strings":["The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":"https://orcid.org/0000-0002-9393-4288","affiliations":[{"raw_affiliation_string":"The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091300175","display_name":"Wei Lin","orcid":"https://orcid.org/0000-0001-9711-2022"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Lin","raw_affiliation_strings":["The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104113766","display_name":"Fengjuan Tian","orcid":null},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengjuan Tian","raw_affiliation_strings":["The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031875407","display_name":"Jing Wan","orcid":"https://orcid.org/0000-0002-4232-7883"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Wan","raw_affiliation_strings":["The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078894109","display_name":"Jingyang Gao","orcid":"https://orcid.org/0000-0003-1270-6257"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyang Gao","raw_affiliation_strings":["The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The College of Information Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045599780","display_name":"Yigang Tong","orcid":"https://orcid.org/0000-0002-8503-8045"},"institutions":[{"id":"https://openalex.org/I75390827","display_name":"Beijing University of Chemical Technology","ror":"https://ror.org/00df5yc52","country_code":"CN","type":"education","lineage":["https://openalex.org/I75390827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yigang Tong","raw_affiliation_strings":["The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The College of Life Science and Technology, Beijing University of Chemical Technology , No. 15 North Third Ring East Road, Chaoyang District, Beijing 100029 ,","institution_ids":["https://openalex.org/I75390827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I75390827"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.472,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.91325929,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6045366525650024},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5906973481178284},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5783491134643555},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5514413714408875},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.5335935354232788},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5313283205032349},{"id":"https://openalex.org/keywords/frame","display_name":"Frame (networking)","score":0.45946168899536133},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.368304967880249},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36221960186958313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30297380685806274},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2402190864086151},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1677473485469818},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14380890130996704}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6045366525650024},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5906973481178284},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5783491134643555},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5514413714408875},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.5335935354232788},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5313283205032349},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.45946168899536133},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.368304967880249},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36221960186958313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30297380685806274},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2402190864086151},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1677473485469818},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14380890130996704},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf224","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf224/63233428/bbaf224.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40387494","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40387494","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12086996","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12086996","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf224","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf224/63233428/bbaf224.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410510686.pdf","grobid_xml":"https://content.openalex.org/works/W4410510686.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W2794187484","https://openalex.org/W2953131540","https://openalex.org/W2991483166","https://openalex.org/W3003110834","https://openalex.org/W3033129278","https://openalex.org/W3127656915","https://openalex.org/W3133550758","https://openalex.org/W3148225686","https://openalex.org/W3162965417","https://openalex.org/W3200177497","https://openalex.org/W4200505767","https://openalex.org/W4281561670","https://openalex.org/W4306832053","https://openalex.org/W4327550249","https://openalex.org/W4366742305","https://openalex.org/W4380986103","https://openalex.org/W4391757842","https://openalex.org/W4391955647","https://openalex.org/W4394728402","https://openalex.org/W4394808305","https://openalex.org/W4396217977","https://openalex.org/W4402622641","https://openalex.org/W4403245162","https://openalex.org/W4404139524","https://openalex.org/W4404225848","https://openalex.org/W4404644013","https://openalex.org/W6882708095"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W4252684102","https://openalex.org/W2608983118","https://openalex.org/W2352307597","https://openalex.org/W1979633005","https://openalex.org/W2163724607","https://openalex.org/W3135403405","https://openalex.org/W2023227762","https://openalex.org/W1980092392","https://openalex.org/W2113697305"],"abstract_inverted_index":{"Viruses":[0],"are":[1,201],"ubiquitous":[2],"in":[3,22,51,64,113,162],"nature,":[4],"yet":[5],"our":[6],"understanding":[7],"of":[8,19,33,67,123,167,197],"them":[9],"remains":[10],"limited.":[11],"High-throughput":[12],"sequencing":[13,36],"technology":[14],"facilitates":[15],"the":[16,34,44,121,131,135,143],"unbiased":[17],"revelation":[18],"genetic":[20],"composition":[21],"samples;":[23],"however,":[24],"viral":[25,48,68,82,116,165],"sequences":[26,49,62,69,166],"typically":[27],"make":[28],"up":[29],"a":[30,52,76,87,194],"small":[31],"proportion":[32],"entire":[35],"data,":[37],"making":[38],"it":[39,183],"challenging":[40],"to":[41,103,130,142],"accurately":[42],"identify":[43],"few":[45],"or":[46],"fragmented":[47],"present":[50],"sample.":[53],"The":[54,199],"limited":[55],"features":[56,129,139],"and":[57,91,98,125,155,169],"information":[58,102],"provided":[59],"by":[60,70],"short":[61,81,108,115,164],"result":[63],"insufficient":[65],"resolution":[66],"existing":[71],"models.":[72],"Therefore,":[73],"we":[74,95],"propose":[75],"new":[77],"model,":[78,132],"VirNucPro,":[79],"for":[80,107,186],"sequence":[83,101,128],"identification.":[84],"Based":[85],"on":[86,177],"six-frame":[88],"translation":[89],"strategy":[90],"large":[92],"language":[93],"models,":[94],"combine":[96],"nucleotide":[97,124],"amino":[99,126,137],"acid":[100,127,138],"enhance":[104],"feature":[105],"extraction":[106],"sequences,":[109],"achieving":[110],"high":[111],"accuracy":[112],"identifying":[114,163],"sequences.":[117],"Ablation":[118],"experiments":[119],"compared":[120],"contributions":[122],"confirming":[133],"that":[134],"introduced":[136],"significantly":[140],"contribute":[141],"classification":[144],"results.":[145],"Our":[146,172],"model":[147,173],"outperforms":[148],"others,":[149],"such":[150],"as":[151],"GCNFrame,":[152],"DeepVirFinder,":[153],"DETIRE,":[154],"Virtifier,":[156],"which":[157],"have":[158],"demonstrated":[159],"good":[160],"performance":[161,176],"300":[168],"500":[170],"bp.":[171],"demonstrates":[174],"excellent":[175],"carefully":[178],"created":[179],"real-world":[180],"datasets.":[181],"Additionally,":[182],"can":[184],"scan":[185],"prophage":[187],"regions":[188],"within":[189],"long":[190],"bacterial":[191],"fragments,":[192],"offering":[193],"wide":[195],"range":[196],"applications.":[198],"codes":[200],"available":[202],"at:":[203],"https://github.com/Li-Jing-1997/VirNucPro.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
