{"id":"https://openalex.org/W4410586533","doi":"https://doi.org/10.1093/bib/bbaf223","title":"Network analysis of multivariate time series data in biological systems: methods and applications","display_name":"Network analysis of multivariate time series data in biological systems: methods and applications","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410586533","doi":"https://doi.org/10.1093/bib/bbaf223","pmid":"https://pubmed.ncbi.nlm.nih.gov/40401349"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf223","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf223/63273699/bbaf223.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf223/63273699/bbaf223.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101245158","display_name":"Hao Mei","orcid":"https://orcid.org/0000-0002-4287-6794"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Mei","raw_affiliation_strings":["Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,"],"affiliations":[{"raw_affiliation_string":"Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038898818","display_name":"Zhiyuan Wang","orcid":"https://orcid.org/0000-0002-0159-4758"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyuan Wang","raw_affiliation_strings":["Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,"],"affiliations":[{"raw_affiliation_string":"Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044267838","display_name":"Hang Yang","orcid":"https://orcid.org/0000-0003-3453-5495"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hang Yang","raw_affiliation_strings":["Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,"],"affiliations":[{"raw_affiliation_string":"Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100609231","display_name":"Xiaoke Li","orcid":"https://orcid.org/0000-0002-1775-3063"},"institutions":[{"id":"https://openalex.org/I78988378","display_name":"Renmin University of China","ror":"https://ror.org/041pakw92","country_code":"CN","type":"education","lineage":["https://openalex.org/I78988378"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoke Li","raw_affiliation_strings":["Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,"],"affiliations":[{"raw_affiliation_string":"Center for Applied Statistics , School of Statistics, Institute of Health Data Science, Renmin University of China, 59 Zhongguancun Street, 100872 Beijing,","institution_ids":["https://openalex.org/I78988378"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100258047","display_name":"Yaqing Xu","orcid":"https://orcid.org/0000-0001-7056-4301"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaqing Xu","raw_affiliation_strings":["Department of Epidemiology and Biostatistics , School of Public Health, Shanghai Jiao Tong University School of Medicine, 227 South Chongqing Road, 200025 Shanghai,"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics , School of Public Health, Shanghai Jiao Tong University School of Medicine, 227 South Chongqing Road, 200025 Shanghai,","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101245158"],"corresponding_institution_ids":["https://openalex.org/I78988378"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.2824,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.9427391,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7717215418815613},{"id":"https://openalex.org/keywords/dynamic-bayesian-network","display_name":"Dynamic Bayesian network","score":0.7033423781394958},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.655903160572052},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6157026886940002},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5995632410049438},{"id":"https://openalex.org/keywords/autoregressive-model","display_name":"Autoregressive model","score":0.5450683832168579},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.5208528637886047},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5139877200126648},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5107970237731934},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.5083124041557312},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.47075894474983215},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4545234739780426},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4474030137062073},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.4259815812110901},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4236682951450348},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10554707050323486},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.09766951203346252},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08026304841041565}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7717215418815613},{"id":"https://openalex.org/C82142266","wikidata":"https://www.wikidata.org/wiki/Q3456604","display_name":"Dynamic Bayesian network","level":3,"score":0.7033423781394958},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.655903160572052},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6157026886940002},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5995632410049438},{"id":"https://openalex.org/C159877910","wikidata":"https://www.wikidata.org/wiki/Q2202883","display_name":"Autoregressive model","level":2,"score":0.5450683832168579},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.5208528637886047},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5139877200126648},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5107970237731934},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.5083124041557312},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.47075894474983215},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4545234739780426},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4474030137062073},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.4259815812110901},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4236682951450348},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10554707050323486},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.09766951203346252},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08026304841041565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf223","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf223/63273699/bbaf223.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40401349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40401349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12096012","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12096012","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf223","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf223/63273699/bbaf223.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2689041613","display_name":null,"funder_award_id":"72301283","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7966430909","display_name":null,"funder_award_id":"82204153","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410586533.pdf"},"referenced_works_count":121,"referenced_works":["https://openalex.org/W123517829","https://openalex.org/W630322457","https://openalex.org/W1122068625","https://openalex.org/W1511986666","https://openalex.org/W1542447579","https://openalex.org/W1593373597","https://openalex.org/W1963526411","https://openalex.org/W1965048988","https://openalex.org/W1972127338","https://openalex.org/W1981145803","https://openalex.org/W1986866669","https://openalex.org/W2006877085","https://openalex.org/W2010824638","https://openalex.org/W2020245429","https://openalex.org/W2028329161","https://openalex.org/W2039750798","https://openalex.org/W2049058758","https://openalex.org/W2062533676","https://openalex.org/W2074501647","https://openalex.org/W2077179900","https://openalex.org/W2087409009","https://openalex.org/W2089361438","https://openalex.org/W2093242491","https://openalex.org/W2097596242","https://openalex.org/W2100727290","https://openalex.org/W2102291607","https://openalex.org/W2107107106","https://openalex.org/W2110575115","https://openalex.org/W2111565546","https://openalex.org/W2123346926","https://openalex.org/W2126736494","https://openalex.org/W2132555912","https://openalex.org/W2142277116","https://openalex.org/W2149649623","https://openalex.org/W2153483931","https://openalex.org/W2159797563","https://openalex.org/W2163487866","https://openalex.org/W2225156818","https://openalex.org/W2417388301","https://openalex.org/W2593191290","https://openalex.org/W2593294478","https://openalex.org/W2604957187","https://openalex.org/W2642090123","https://openalex.org/W2760441177","https://openalex.org/W2763434918","https://openalex.org/W2770058355","https://openalex.org/W2787835268","https://openalex.org/W2898117957","https://openalex.org/W2911352402","https://openalex.org/W2942441443","https://openalex.org/W2947626232","https://openalex.org/W2951166049","https://openalex.org/W2951844873","https://openalex.org/W2963699930","https://openalex.org/W2963900617","https://openalex.org/W2966641445","https://openalex.org/W2983217224","https://openalex.org/W2995360419","https://openalex.org/W2995361046","https://openalex.org/W2999574254","https://openalex.org/W3003908343","https://openalex.org/W3022064553","https://openalex.org/W3038711245","https://openalex.org/W3040199983","https://openalex.org/W3041235851","https://openalex.org/W3041392591","https://openalex.org/W3045143113","https://openalex.org/W3089611792","https://openalex.org/W3094284145","https://openalex.org/W3098724218","https://openalex.org/W3100751368","https://openalex.org/W3101106845","https://openalex.org/W3102024356","https://openalex.org/W3102937128","https://openalex.org/W3105093154","https://openalex.org/W3105438626","https://openalex.org/W3108155943","https://openalex.org/W3124120322","https://openalex.org/W3124251522","https://openalex.org/W3125143186","https://openalex.org/W3134169372","https://openalex.org/W3134662931","https://openalex.org/W3135853200","https://openalex.org/W3153284806","https://openalex.org/W3157598885","https://openalex.org/W3161787125","https://openalex.org/W3195285310","https://openalex.org/W3196251489","https://openalex.org/W3217360279","https://openalex.org/W4229028016","https://openalex.org/W4244364296","https://openalex.org/W4293094410","https://openalex.org/W4293473232","https://openalex.org/W4297200745","https://openalex.org/W4300862731","https://openalex.org/W4308322041","https://openalex.org/W4316096614","https://openalex.org/W4316661139","https://openalex.org/W4365456698","https://openalex.org/W4381929620","https://openalex.org/W4382022265","https://openalex.org/W4387637159","https://openalex.org/W4388851821","https://openalex.org/W4390509856","https://openalex.org/W4392352213","https://openalex.org/W4393167142","https://openalex.org/W4396514609","https://openalex.org/W4396627758","https://openalex.org/W6632156859","https://openalex.org/W6635350585","https://openalex.org/W6674106868","https://openalex.org/W6675276251","https://openalex.org/W6675294747","https://openalex.org/W6676274861","https://openalex.org/W6681383220","https://openalex.org/W6682641804","https://openalex.org/W6683612810","https://openalex.org/W6752649438","https://openalex.org/W6757010002","https://openalex.org/W6780310715","https://openalex.org/W6861709566"],"related_works":["https://openalex.org/W3183113072","https://openalex.org/W2126934800","https://openalex.org/W2187019487","https://openalex.org/W1715419791","https://openalex.org/W643788828","https://openalex.org/W2155492529","https://openalex.org/W2158940596","https://openalex.org/W4200510307","https://openalex.org/W4252504573","https://openalex.org/W81870625"],"abstract_inverted_index":{"Network":[0],"analysis":[1],"has":[2],"become":[3],"an":[4],"essential":[5],"tool":[6],"in":[7,129],"biological":[8,16,19,133],"and":[9,35,50,78,98,107,127],"biomedical":[10],"research,":[11],"providing":[12],"insights":[13],"into":[14],"complex":[15],"mechanisms.":[17],"Since":[18],"systems":[20],"are":[21],"inherently":[22],"time-dependent,":[23],"incorporating":[24],"time-varying":[25,44,71],"methods":[26,97],"is":[27],"crucial":[28],"for":[29,46,62,111],"capturing":[30],"temporal":[31],"changes,":[32],"adaptive":[33],"interactions,":[34],"evolving":[36],"dependencies":[37],"within":[38],"networks.":[39],"Our":[40],"study":[41,119],"explores":[42],"key":[43],"methodologies":[45],"network":[47,51,64],"structure":[48],"estimation":[49],"inference":[52],"based":[53],"on":[54,69],"observed":[55,92],"structures.":[56],"We":[57],"begin":[58],"by":[59],"discussing":[60],"approaches":[61],"estimating":[63],"structures":[65],"from":[66],"data,":[67],"focusing":[68],"the":[70,130],"Gaussian":[72],"graphical":[73],"model,":[74],"dynamic":[75],"Bayesian":[76],"network,":[77],"vector":[79],"autoregression-based":[80,96],"causal":[81],"analysis.":[82,135],"Next,":[83],"we":[84,103],"examine":[85],"analytical":[86],"techniques":[87],"that":[88],"leverage":[89],"pre-specified":[90],"or":[91],"networks,":[93],"including":[94],"other":[95],"latent":[99],"variable":[100],"models.":[101],"Furthermore,":[102],"explore":[104],"practical":[105],"applications":[106],"computational":[108],"tools":[109],"designed":[110],"these":[112,116],"methods.":[113],"By":[114],"synthesizing":[115],"approaches,":[117],"our":[118],"provides":[120],"a":[121],"comprehensive":[122],"evaluation":[123],"of":[124,132],"their":[125],"strengths":[126],"limitations":[128],"context":[131],"data":[134]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
