{"id":"https://openalex.org/W4410518452","doi":"https://doi.org/10.1093/bib/bbaf220","title":"Knowledge-guided multi-level network modeling with experimental characterization identifies PRKCA as a novel biomarker and tumor suppressor triggering ferroptosis in prostate cancer","display_name":"Knowledge-guided multi-level network modeling with experimental characterization identifies PRKCA as a novel biomarker and tumor suppressor triggering ferroptosis in prostate cancer","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410518452","doi":"https://doi.org/10.1093/bib/bbaf220","pmid":"https://pubmed.ncbi.nlm.nih.gov/40391833"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf220","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf220/63243545/bbaf220.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf220/63243545/bbaf220.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002365671","display_name":"Yuxin Lin","orcid":"https://orcid.org/0000-0001-6543-0317"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxin Lin","raw_affiliation_strings":["Department of Medical Systems Biology, School of Basic Medical Sciences, Suzhou Medical College of Soochow University , No. 199 Renai Road, Suzhou Industrial Park, Suzhou 215123 ,","Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Systems Biology, School of Basic Medical Sciences, Suzhou Medical College of Soochow University , No. 199 Renai Road, Suzhou Industrial Park, Suzhou 215123 ,","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066924674","display_name":"Zongming Jia","orcid":"https://orcid.org/0009-0007-8741-6648"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongming Jia","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055010299","display_name":"Jixiang Wu","orcid":"https://orcid.org/0000-0003-2381-0893"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jixiang Wu","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101707576","display_name":"Hao Yang","orcid":"https://orcid.org/0000-0001-9011-288X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hubo Yang","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100721796","display_name":"Xin Chen","orcid":"https://orcid.org/0000-0002-2628-4027"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Chen","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051555994","display_name":"He Wang","orcid":"https://orcid.org/0000-0002-5707-4559"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"He Wang","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101775023","display_name":"Xuedong Wei","orcid":"https://orcid.org/0000-0003-2000-2620"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuedong Wei","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002678361","display_name":"Wenying Yan","orcid":"https://orcid.org/0000-0001-5016-575X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153682","display_name":"Intelligent Health (United Kingdom)","ror":"https://ror.org/0576zak10","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210153682"]},{"id":"https://openalex.org/I4403386725","display_name":"Suzhou City University","ror":"https://ror.org/025jsyk19","country_code":null,"type":"education","lineage":["https://openalex.org/I4403386725"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Wenying Yan","raw_affiliation_strings":["Department of Medical Systems Biology, School of Basic Medical Sciences, Suzhou Medical College of Soochow University , No. 199 Renai Road, Suzhou Industrial Park, Suzhou 215123 ,","Suzhou Key Lab of Multi-modal Data Fusion and Intelligent Healthcare, Computing Science and Artificial Intelligence College, Suzhou City University , No. 1188 Wuzhong Avenue, Wuzhong District, Suzhou 215004 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Systems Biology, School of Basic Medical Sciences, Suzhou Medical College of Soochow University , No. 199 Renai Road, Suzhou Industrial Park, Suzhou 215123 ,","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Suzhou Key Lab of Multi-modal Data Fusion and Intelligent Healthcare, Computing Science and Artificial Intelligence College, Suzhou City University , No. 1188 Wuzhong Avenue, Wuzhong District, Suzhou 215004 ,","institution_ids":["https://openalex.org/I4210153682","https://openalex.org/I4403386725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087999294","display_name":"Xin Qi","orcid":"https://orcid.org/0000-0003-2637-3289"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Qi","raw_affiliation_strings":["School of Chemistry and Life Sciences, Suzhou University of Science and Technology , No. 99 Xuefu Road, Huqiu District, Suzhou 215011 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry and Life Sciences, Suzhou University of Science and Technology , No. 99 Xuefu Road, Huqiu District, Suzhou 215011 ,","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002375482","display_name":"Yuhua Huang","orcid":"https://orcid.org/0000-0001-9610-2113"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4210153519","display_name":"First Affiliated Hospital of Soochow University","ror":"https://ror.org/051jg5p78","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153519"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuhua Huang","raw_affiliation_strings":["Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, the First Affiliated Hospital of Soochow University , No. 899 Pinghai Road, Gusu District, Suzhou 215000 ,","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4210153519"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.1881,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.91260337,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48291894793510437},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.46136942505836487},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.42697691917419434},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.4206002950668335},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4203602373600006},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4181956350803375},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.4181445837020874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3527914583683014},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.35232213139533997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3482019305229187},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33388999104499817},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17089775204658508},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.15765973925590515},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12782317399978638}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48291894793510437},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.46136942505836487},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.42697691917419434},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.4206002950668335},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4203602373600006},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4181956350803375},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.4181445837020874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3527914583683014},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.35232213139533997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3482019305229187},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33388999104499817},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17089775204658508},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.15765973925590515},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12782317399978638}],"mesh":[{"descriptor_ui":"D000079403","descriptor_name":"Ferroptosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079403","descriptor_name":"Ferroptosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079403","descriptor_name":"Ferroptosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079403","descriptor_name":"Ferroptosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079403","descriptor_name":"Ferroptosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008819","descriptor_name":"Mice, Nude","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008819","descriptor_name":"Mice, Nude","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008819","descriptor_name":"Mice, Nude","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008819","descriptor_name":"Mice, Nude","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008819","descriptor_name":"Mice, Nude","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf220","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf220/63243545/bbaf220.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40391833","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40391833","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12090055","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12090055","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf220","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf220/63243545/bbaf220.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6200000047683716,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4756155457","display_name":null,"funder_award_id":"32270705","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5535701846","display_name":null,"funder_award_id":"32200533","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6540350942","display_name":null,"funder_award_id":"BK20241796","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324720","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410518452.pdf","grobid_xml":"https://content.openalex.org/works/W4410518452.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1935551279","https://openalex.org/W1967990571","https://openalex.org/W1997183854","https://openalex.org/W2012034410","https://openalex.org/W2035618305","https://openalex.org/W2062533676","https://openalex.org/W2081098333","https://openalex.org/W2095293504","https://openalex.org/W2103912979","https://openalex.org/W2105776484","https://openalex.org/W2107633226","https://openalex.org/W2118258530","https://openalex.org/W2150318080","https://openalex.org/W2156737316","https://openalex.org/W2171273050","https://openalex.org/W2285179499","https://openalex.org/W2318160598","https://openalex.org/W2734757171","https://openalex.org/W2768422310","https://openalex.org/W2946657092","https://openalex.org/W2964069817","https://openalex.org/W2966722814","https://openalex.org/W3096828292","https://openalex.org/W3109926818","https://openalex.org/W3128646645","https://openalex.org/W3129135271","https://openalex.org/W3131933860","https://openalex.org/W3164389191","https://openalex.org/W4221112683","https://openalex.org/W4283805878","https://openalex.org/W4291321812","https://openalex.org/W4307468169","https://openalex.org/W4308834893","https://openalex.org/W4309673835","https://openalex.org/W4310191335","https://openalex.org/W4311300638","https://openalex.org/W4317625849","https://openalex.org/W4318619681","https://openalex.org/W4368358565","https://openalex.org/W4384340385","https://openalex.org/W4387033412","https://openalex.org/W4388454971","https://openalex.org/W4390547742","https://openalex.org/W4390946922","https://openalex.org/W4391076737","https://openalex.org/W4391350847","https://openalex.org/W4395113309","https://openalex.org/W4396868508","https://openalex.org/W4398143123","https://openalex.org/W4405720372","https://openalex.org/W4405862161"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W4404588215","https://openalex.org/W2108949684","https://openalex.org/W4246773350","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977"],"abstract_inverted_index":{"Prostate":[0],"cancer":[1],"(PCa)":[2],"is":[3,23],"observed":[4],"with":[5,79,104,146,192],"high":[6],"incidence":[7],"in":[8,15,43,58,92,114,189],"men":[9],"worldwide.":[10],"Ferroptosis,":[11],"occurred":[12],"from":[13],"disorders":[14],"a":[16,59,65,85,101,120,133,142,158,182,186,193,206,222],"series":[17],"of":[18,31,179,200,219],"gene":[19,151],"and":[20,46,51,68,81,95,125,132,157,173,185,215,225],"pathway":[21],"regulation,":[22],"an":[24],"emerging":[25],"target":[26],"against":[27],"cancer.":[28],"However,":[29],"most":[30],"the":[32,47,115,177],"computational":[33],"approaches":[34],"solely":[35],"treated":[36],"ferroptosis-related":[37,76],"genes":[38,109],"(FRGs)":[39],"as":[40,181,221],"independent":[41],"variables":[42],"model":[44,71,98],"training,":[45],"interactions":[48],"among":[49],"FRGs":[50,113],"other":[52],"candidates":[53],"were":[54,138],"not":[55],"fully":[56],"deciphered":[57],"disease-specific":[60],"content.":[61],"In":[62],"this":[63],"study,":[64],"novel":[66,223],"network-based":[67],"knowledge-guided":[69],"bioinformatics":[70],"was":[72],"proposed":[73],"by":[74],"integrating":[75],"prior":[77],"knowledge":[78],"topological":[80],"functional":[82,162],"characterization":[83],"on":[84,196],"protein-protein":[86],"interaction":[87],"network":[88,117],"for":[89,107,123,211,228],"biomarker":[90,184],"discovery":[91],"PCa":[93,190,201,229],"development":[94],"ferroptosis.":[96],"The":[97,164],"started":[99],"at":[100],"random":[102],"walk":[103],"restart":[105],"algorithm":[106],"weighting":[108],"close":[110],"to":[111,118],"known":[112],"PCa-specific":[116],"extract":[119],"core":[121],"subnetwork":[122],"robustness":[124],"vulnerability":[126],"analysis.":[127],"Then":[128],"key":[129],"regulatory":[130],"modules":[131],"candidate":[134],"gene,":[135],"i.e.":[136],"PRKCA,":[137],"respectively":[139],"identified":[140],"using":[141,167],"multi-level":[143],"prioritization":[144],"strategy":[145],"hub-bottleneck":[147],"node":[148],"filtering,":[149],"edge-based":[150],"co-expression":[152],"measuring,":[153],"community":[154],"module":[155],"detecting":[156],"newly":[159],"defined":[160],"Ferr.neighbor":[161],"score.":[163],"experimental":[165],"validation":[166],"human":[168],"clinical":[169],"samples,":[170],"cell":[171],"lines,":[172],"nude":[174],"mice":[175],"convinced":[176],"role":[178],"PRKCA":[180,220],"latent":[183],"tumor":[187],"suppressor":[188],"carcinogenesis":[191],"potential":[194],"mechanism":[195],"triggering":[197],"GPX4-mediated":[198],"ferroptosis":[199],"cells.":[202],"This":[203],"study":[204],"provides":[205],"general-purpose":[207],"systems":[208],"biology":[209],"framework":[210],"significant":[212],"FRG":[213],"screening,":[214],"future":[216],"translational":[217],"perspectives":[218],"diagnostic":[224],"therapeutic":[226],"signature":[227],"management":[230],"should":[231],"be":[232],"explored.":[233]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
