{"id":"https://openalex.org/W4410841062","doi":"https://doi.org/10.1093/bib/bbaf213","title":"PPIxGPN: plasma proteomic profiling of neurodegenerative biomarkers with protein\u2013protein interaction-based eXplainable graph propagational network","display_name":"PPIxGPN: plasma proteomic profiling of neurodegenerative biomarkers with protein\u2013protein interaction-based eXplainable graph propagational network","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410841062","doi":"https://doi.org/10.1093/bib/bbaf213","pmid":"https://pubmed.ncbi.nlm.nih.gov/40439668"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf213","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf213","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065842376","display_name":"Sunghong Park","orcid":"https://orcid.org/0000-0002-5158-4670"},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunghong Park","raw_affiliation_strings":["Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":"https://orcid.org/0000-0002-5158-4670","affiliations":[{"raw_affiliation_string":"Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100600860","display_name":"Dong\u2010Gi Lee","orcid":"https://orcid.org/0000-0002-7885-7894"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong-gi Lee","raw_affiliation_strings":["Department of Biostatistics , Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics , Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104,","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101886886","display_name":"Juhyeon Kim","orcid":"https://orcid.org/0000-0001-6466-375X"},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]},{"id":"https://openalex.org/I878022262","display_name":"Korea Institute of Science & Technology Information","ror":"https://ror.org/01k4yrm29","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I878022262"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Juhyeon Kim","raw_affiliation_strings":["Department of Data-Centric Problem Solving Research , Korea Institute of Science and Technology Information, Daehak-ro 245, Yuseong-gu, Daejeon, 34141,","Department of Industrial Engineering , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Data-Centric Problem Solving Research , Korea Institute of Science and Technology Information, Daehak-ro 245, Yuseong-gu, Daejeon, 34141,","institution_ids":["https://openalex.org/I878022262"]},{"raw_affiliation_string":"Department of Industrial Engineering , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101438752","display_name":"Seung Ho Kim","orcid":"https://orcid.org/0000-0002-3588-0963"},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seung Ho Kim","raw_affiliation_strings":["Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028226574","display_name":"H. Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyeon Jin Hwang","raw_affiliation_strings":["Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043830800","display_name":"Hyunjung Shin","orcid":"https://orcid.org/0000-0001-8347-8277"},"institutions":[{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyunjung Shin","raw_affiliation_strings":["Department of Artificial Intelligence , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,","Department of Industrial Engineering , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":"https://orcid.org/0000-0001-8347-8277","affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Industrial Engineering , Ajou University, Worldcup-ro 206, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070772179","display_name":"Hyun Goo Woo","orcid":"https://orcid.org/0000-0002-0916-893X"},"institutions":[{"id":"https://openalex.org/I2802849423","display_name":"University Medical Center","ror":"https://ror.org/036pt7h44","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802849423"]},{"id":"https://openalex.org/I57664883","display_name":"Ajou University","ror":"https://ror.org/03tzb2h73","country_code":"KR","type":"education","lineage":["https://openalex.org/I57664883"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Hyun Goo Woo","raw_affiliation_strings":["Ajou Translational Omics Center , Research Institute for Innovative Medicine, Ajou University Medical Center, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,"],"raw_orcid":"https://orcid.org/0000-0002-0916-893X","affiliations":[{"raw_affiliation_string":"Ajou Translational Omics Center , Research Institute for Innovative Medicine, Ajou University Medical Center, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883","https://openalex.org/I2802849423"]},{"raw_affiliation_string":"Department of Biomedical Science , Graduate School of Ajou University, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]},{"raw_affiliation_string":"Department of Physiology , Ajou University School of Medicine, Worldcup-ro 164, Yeongtong-gu, Suwon, 16499,","institution_ids":["https://openalex.org/I57664883"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.576,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.66417814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6940467357635498},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.5155755877494812},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4592859745025635},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4534305930137634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4316653907299042},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.41640353202819824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3397458791732788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13093414902687073}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6940467357635498},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.5155755877494812},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4592859745025635},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4534305930137634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4316653907299042},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.41640353202819824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3397458791732788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13093414902687073},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf213","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40439668","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40439668","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12121361","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12121361","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf213","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1916330421","https://openalex.org/W1993591356","https://openalex.org/W2012852001","https://openalex.org/W2107350938","https://openalex.org/W2113654464","https://openalex.org/W2139082034","https://openalex.org/W2146512944","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2345356016","https://openalex.org/W2798054687","https://openalex.org/W2916106175","https://openalex.org/W2942681667","https://openalex.org/W2962862931","https://openalex.org/W2963433607","https://openalex.org/W2964015378","https://openalex.org/W2964121744","https://openalex.org/W3017890102","https://openalex.org/W3036473471","https://openalex.org/W3088634533","https://openalex.org/W3107395714","https://openalex.org/W3161583477","https://openalex.org/W3164390524","https://openalex.org/W3170895581","https://openalex.org/W3209856620","https://openalex.org/W3212165552","https://openalex.org/W3212342036","https://openalex.org/W4213416459","https://openalex.org/W4225114792","https://openalex.org/W4280490458","https://openalex.org/W4297036157","https://openalex.org/W4308834893","https://openalex.org/W4313525737","https://openalex.org/W4323348775","https://openalex.org/W4377224939","https://openalex.org/W4386121835","https://openalex.org/W4386347024","https://openalex.org/W4386387831","https://openalex.org/W4388098629","https://openalex.org/W4388539829","https://openalex.org/W4389047746","https://openalex.org/W4390640127","https://openalex.org/W4391743929","https://openalex.org/W4392357343","https://openalex.org/W4392764156","https://openalex.org/W4392951786","https://openalex.org/W4393930065","https://openalex.org/W4396868984","https://openalex.org/W4399316342","https://openalex.org/W4400089962","https://openalex.org/W4401503494","https://openalex.org/W4402170902","https://openalex.org/W4402896045","https://openalex.org/W4403423088","https://openalex.org/W4403479110","https://openalex.org/W4404358085","https://openalex.org/W4405898663","https://openalex.org/W4406937646","https://openalex.org/W4408158098","https://openalex.org/W6737947904","https://openalex.org/W6803334427"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2761785940","https://openalex.org/W2110523656","https://openalex.org/W1482209366","https://openalex.org/W2521627374"],"abstract_inverted_index":{"Neurodegenerative":[0],"diseases":[1],"involve":[2],"progressive":[3],"neuronal":[4],"dysfunction,":[5],"requiring":[6],"the":[7,202,207,220,228,234,240],"identification":[8],"of":[9,142,157,210,222,227,231,237],"specific":[10],"pathological":[11],"features":[12],"for":[13,117,138],"accurate":[14],"diagnosis.":[15],"While":[16],"cerebrospinal":[17],"fluid":[18],"analysis":[19],"and":[20,28,43,75,90,239],"neuroimaging":[21],"are":[22],"commonly":[23],"used,":[24],"their":[25],"invasive":[26,42],"nature":[27],"high":[29,189],"costs":[30],"limit":[31],"clinical":[32,118,193,248],"applicability.":[33],"Recently":[34],"advances":[35],"in":[36,68,103,113,212,243],"plasma":[37,139],"proteomics":[38],"offer":[39],"a":[40,65,133,173],"less":[41],"cost-effective":[44],"alternative,":[45],"further":[46],"enhanced":[47],"by":[48,151,183,195],"machine":[49],"learning":[50],"(ML).":[51],"However,":[52],"most":[53],"ML-based":[54],"studies":[55],"overlook":[56],"synergetic":[57,147],"effects":[58,148,156],"from":[59],"protein-protein":[60],"interactions":[61],"(PPIs),":[62],"which":[63,110],"play":[64],"key":[66],"role":[67],"disease":[69],"mechanisms.":[70],"Although":[71],"graph":[72,175],"convolutional":[73],"network":[74],"its":[76,247],"extensions":[77],"can":[78],"utilize":[79],"PPIs,":[80],"they":[81],"rely":[82],"on":[83,201],"locality-based":[84],"feature":[85,161],"aggregation,":[86],"overlooking":[87],"essential":[88],"components":[89],"emphasizing":[91],"noisy":[92],"interactions.":[93],"Moreover,":[94],"expanding":[95],"those":[96],"methods":[97],"to":[98,163,180],"cover":[99],"broader":[100],"PPIs":[101,153],"results":[102],"complex":[104],"model":[105,136,190],"architectures":[106],"that":[107],"reduce":[108],"explainability,":[109,191],"is":[111,170],"crucial":[112],"medical":[114],"ML":[115,135],"models":[116],"decision-making.":[119],"To":[120],"address":[121],"these":[122],"challenges,":[123],"we":[124],"propose":[125],"Protein-Protein":[126],"Interaction-based":[127],"eXplainable":[128],"Graph":[129],"Propagational":[130],"Network":[131],"(PPIxGPN),":[132],"novel":[134],"designed":[137],"proteomic":[140],"profiling":[141],"neurodegenerative":[143,213],"biomarkers.":[144],"PPIxGPN":[145,179,187,211,223],"captures":[146],"between":[149],"proteins":[150],"integrating":[152],"with":[154],"independent":[155],"proteins,":[158,238],"leveraging":[159],"globality-based":[160],"aggregation":[162],"represent":[164],"comprehensive":[165],"PPI":[166],"properties.":[167],"This":[168],"process":[169],"implemented":[171],"using":[172],"single":[174],"propagational":[176],"layer,":[177],"enabling":[178],"be":[181],"configured":[182],"shallow":[184],"architecture,":[185],"thereby":[186],"ensures":[188],"enhancing":[192],"applicability":[194],"providing":[196],"interpretable":[197],"outputs.":[198],"Experimental":[199],"validation":[200],"UK":[203],"Biobank":[204],"dataset":[205],"demonstrated":[206],"superior":[208],"performance":[209],"risk":[214],"prediction,":[215],"outperforming":[216],"comparison":[217],"methods.":[218],"Furthermore,":[219],"explainability":[221],"facilitated":[224],"detailed":[225],"analyses":[226],"discriminative":[229],"significance":[230],"synergistic":[232],"effects,":[233],"predictive":[235],"importance":[236],"longitudinal":[241],"changes":[242],"biomarker":[244],"profiles,":[245],"highlighting":[246],"relevance.":[249]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
