{"id":"https://openalex.org/W4410661600","doi":"https://doi.org/10.1093/bib/bbaf210","title":"StereoMM: a graph fusion model for integrating spatial transcriptomic data and pathological images","display_name":"StereoMM: a graph fusion model for integrating spatial transcriptomic data and pathological images","publication_year":2025,"publication_date":"2025-04-23","ids":{"openalex":"https://openalex.org/W4410661600","doi":"https://doi.org/10.1093/bib/bbaf210","pmid":"https://pubmed.ncbi.nlm.nih.gov/40407386"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf210","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf210/63308337/bbaf210.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf210/63308337/bbaf210.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072927923","display_name":"Bingying Luo","orcid":"https://orcid.org/0009-0001-6344-2645"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":true,"raw_author_name":"Bingying Luo","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100647693","display_name":"Fei Teng","orcid":"https://orcid.org/0000-0003-4913-7094"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Fei Teng","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100570133","display_name":"Guo Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Guo Tang","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045307785","display_name":"Weixuan Cen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Weixuan Cen","raw_affiliation_strings":["BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100381483","display_name":"Xing Liu","orcid":"https://orcid.org/0000-0003-1741-3437"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Xing Liu","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111111058","display_name":"Jinmiao Chen","orcid":"https://orcid.org/0000-0001-7547-6423"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jinmiao Chen","raw_affiliation_strings":["Center for Computational Biology and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Program in Cancer and Stem Cell Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857 ,","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082051549","display_name":"Chi Qu","orcid":"https://orcid.org/0000-0002-3776-5512"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Chi Qu","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111191188","display_name":"Xuanzhu Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Xuanzhu Liu","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100352324","display_name":"Xin Liu","orcid":"https://orcid.org/0000-0003-3256-2940"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Xin Liu","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101516463","display_name":"Wenyan Jiang","orcid":"https://orcid.org/0000-0002-1089-3450"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Wenyan Jiang","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019762338","display_name":"Huaqiang Huang","orcid":"https://orcid.org/0009-0000-5844-1261"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Huaqiang Huang","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100744686","display_name":"Yu Feng","orcid":"https://orcid.org/0000-0001-8358-8740"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]},{"id":"https://openalex.org/I4210126929","display_name":"CE Technologies (United Kingdom)","ror":"https://ror.org/02pw67e25","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210126929"]},{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN","GB"],"is_corresponding":false,"raw_author_name":"Yu Feng","raw_affiliation_strings":["BGI Collaborative Center for Future Medicine, Shanxi Medical University , No. 1258, Xinjiannan Road, Yingze District, Taiyuan 030001 ,","BGI Research, No. 9, Yunhua Road, Yantian District , , Shenzhen 518083 ,","State Key Laboratory of Genome and Multi-omics Technologies , , Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Collaborative Center for Future Medicine, Shanxi Medical University , No. 1258, Xinjiannan Road, Yingze District, Taiyuan 030001 ,","institution_ids":["https://openalex.org/I17721919"]},{"raw_affiliation_string":"BGI Research, No. 9, Yunhua Road, Yantian District , , Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"State Key Laboratory of Genome and Multi-omics Technologies , , Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210126929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445858","display_name":"Xue Zhang","orcid":"https://orcid.org/0000-0002-8297-9931"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Xue Zhang","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016529100","display_name":"Min Jian","orcid":"https://orcid.org/0000-0003-4985-5520"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Min Jian","raw_affiliation_strings":["BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045828187","display_name":"Mei Li","orcid":"https://orcid.org/0000-0003-3310-2911"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Mei Li","raw_affiliation_strings":["BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055323092","display_name":"Feng Xi","orcid":"https://orcid.org/0000-0002-4170-3023"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Feng Xi","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001823045","display_name":"Guibo Li","orcid":"https://orcid.org/0000-0002-6141-4931"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Guibo Li","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009235827","display_name":"Sha Liao","orcid":"https://orcid.org/0000-0001-5825-5514"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Sha Liao","raw_affiliation_strings":["BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326792","display_name":"Ao Chen","orcid":"https://orcid.org/0000-0002-9699-8340"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Ao Chen","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015449777","display_name":"Weimiao Yu","orcid":"https://orcid.org/0000-0001-5092-1009"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Weimiao Yu","raw_affiliation_strings":["School of Biological Science, Nanyang Technological University , 60 Nanyang Drive, Singapore 637551 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Science, Nanyang Technological University , 60 Nanyang Drive, Singapore 637551 ,","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451926","display_name":"Xun Xu","orcid":"https://orcid.org/0000-0002-5338-5173"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Xun Xu","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Hangzhou, No. 203, Zhenzhong Road, Xihu District, Hangzhou 310030 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Hangzhou, No. 203, Zhenzhong Road, Xihu District, Hangzhou 310030 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5115597273","display_name":"Jiajun Zhang","orcid":"https://orcid.org/0009-0005-7336-992X"},"institutions":[{"id":"https://openalex.org/I4210127782","display_name":"Botswana Geoscience Institute","ror":"https://ror.org/038fqq280","country_code":"BW","type":"other","lineage":["https://openalex.org/I4210127782"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["BW","CN"],"is_corresponding":false,"raw_author_name":"Jiajun Zhang","raw_affiliation_strings":["BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research , Chongqing, No. 313, Jinyue road, Jiulongpo District, Chongqing 401329 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]},{"raw_affiliation_string":"BGI Research , Shenzhen, No. 9, Yunhua Road, Yantian District, Shenzhen 518083 ,","institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":22,"corresponding_author_ids":["https://openalex.org/A5072927923"],"corresponding_institution_ids":["https://openalex.org/I4210127782","https://openalex.org/I4387153646"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.7528,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.93235651,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.700761616230011},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5116201043128967},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5015208721160889},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4567568898200989},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.45038866996765137},{"id":"https://openalex.org/keywords/toolchain","display_name":"Toolchain","score":0.4408799111843109},{"id":"https://openalex.org/keywords/sensor-fusion","display_name":"Sensor fusion","score":0.4327068328857422},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4137912690639496},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37680742144584656},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.27635687589645386},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.10038790106773376}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.700761616230011},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5116201043128967},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5015208721160889},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4567568898200989},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.45038866996765137},{"id":"https://openalex.org/C2777062904","wikidata":"https://www.wikidata.org/wiki/Q545406","display_name":"Toolchain","level":3,"score":0.4408799111843109},{"id":"https://openalex.org/C33954974","wikidata":"https://www.wikidata.org/wiki/Q486494","display_name":"Sensor fusion","level":2,"score":0.4327068328857422},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4137912690639496},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37680742144584656},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.27635687589645386},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.10038790106773376},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf210","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf210/63308337/bbaf210.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40407386","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40407386","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/207026","is_oa":false,"landing_page_url":"https://hdl.handle.net/10356/207026","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12100622","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12100622","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf210","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf210/63308337/bbaf210.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327639","display_name":"Centre Scientifique et Technique du B\u00e2timent","ror":"https://ror.org/02fsd1928"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410661600.pdf","grobid_xml":"https://content.openalex.org/works/W4410661600.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W2041756868","https://openalex.org/W2123491442","https://openalex.org/W2591514928","https://openalex.org/W2788862846","https://openalex.org/W2800392236","https://openalex.org/W2883806089","https://openalex.org/W2979085806","https://openalex.org/W3002480603","https://openalex.org/W3042080296","https://openalex.org/W3092434283","https://openalex.org/W3108118546","https://openalex.org/W3126958162","https://openalex.org/W3171746194","https://openalex.org/W3190202966","https://openalex.org/W3204312334","https://openalex.org/W3205213119","https://openalex.org/W3205594709","https://openalex.org/W4205541212","https://openalex.org/W4205900565","https://openalex.org/W4207066074","https://openalex.org/W4220675433","https://openalex.org/W4221064218","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4283704002","https://openalex.org/W4289637826","https://openalex.org/W4289956737","https://openalex.org/W4290960388","https://openalex.org/W4294052977","https://openalex.org/W4313557154","https://openalex.org/W4322768301","https://openalex.org/W4385515928","https://openalex.org/W4386194035","https://openalex.org/W4386697749","https://openalex.org/W4388997570","https://openalex.org/W4389068207","https://openalex.org/W4390814844","https://openalex.org/W4396781237","https://openalex.org/W4399201860","https://openalex.org/W4402220065"],"related_works":["https://openalex.org/W2013037783","https://openalex.org/W2891286602","https://openalex.org/W2062592733","https://openalex.org/W8795902","https://openalex.org/W2085627709","https://openalex.org/W2150355991","https://openalex.org/W2381518157","https://openalex.org/W2128228838","https://openalex.org/W2081383551","https://openalex.org/W2282571455"],"abstract_inverted_index":{"Spatial":[0],"omics":[1,47,64,76],"technologies,":[2],"generating":[3],"high-throughput":[4],"and":[5,21,55,67,75,88,105,117,126,144],"multimodal":[6,138],"data,":[7],"have":[8],"necessitated":[9],"the":[10,27],"development":[11],"of":[12,128,136],"advanced":[13],"data":[14,48,65,77],"integration":[15,125],"methods":[16],"to":[17,71,132],"facilitate":[18],"comprehensive":[19,123],"biological":[20],"clinical":[22],"treatment":[23],"discoveries.":[24],"Based":[25],"on":[26],"cross-attention":[28],"concept,":[29],"we":[30],"developed":[31],"an":[32,60],"AI":[33],"learning":[34],"based":[35,41],"toolchain":[36],"called":[37],"StereoMM,":[38],"a":[39,68,79],"graph":[40,69],"fusion":[42],"model":[43],"that":[44],"can":[45],"incorporate":[46],"such":[49],"as":[50],"gene":[51],"expression,":[52],"histological":[53],"images,":[54],"spatial":[56,73,100,134],"location.":[57],"StereoMM":[58,83,95,129],"uses":[59],"attention":[61],"module":[62],"for":[63],"interaction":[66],"autoencoder":[70],"integrate":[72],"positions":[74],"in":[78,98,108],"self-supervised":[80],"manner.":[81],"Applying":[82],"across":[84],"various":[85],"cancer":[86,111],"types":[87],"platforms":[89],"has":[90],"demonstrated":[91],"its":[92],"robust":[93],"capability.":[94],"outperforms":[96],"competitors":[97],"identifying":[99],"regions":[101],"reflecting":[102],"tumour":[103],"progression":[104],"shows":[106],"promise":[107],"classifying":[109],"colorectal":[110],"patients":[112],"into":[113],"deficient":[114],"mismatch":[115,119],"repair":[116,120],"proficient":[118],"groups.":[121],"The":[122],"inter-modal":[124],"efficiency":[127],"enable":[130],"researchers":[131],"construct":[133],"views":[135],"integrated":[137],"features":[139],"efficiently,":[140],"advancing":[141],"thorough":[142],"tissue":[143],"patient":[145],"characterization.":[146]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
