{"id":"https://openalex.org/W4410216721","doi":"https://doi.org/10.1093/bib/bbaf203","title":"SVHunter: long-read-based structural variation detection through the transformer model","display_name":"SVHunter: long-read-based structural variation detection through the transformer model","publication_year":2025,"publication_date":"2025-04-17","ids":{"openalex":"https://openalex.org/W4410216721","doi":"https://doi.org/10.1093/bib/bbaf203","pmid":"https://pubmed.ncbi.nlm.nih.gov/40341921"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf203","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf203/63131233/bbaf203.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf203/63131233/bbaf203.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075906577","display_name":"Runtian Gao","orcid":"https://orcid.org/0009-0009-0870-6693"},"institutions":[{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CA","CN"],"is_corresponding":true,"raw_author_name":"Runtian Gao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","College of Life Science, Northeast Forestry University , Harbin 150000 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"College of Life Science, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053942142","display_name":"Heng Hu","orcid":"https://orcid.org/0000-0002-9505-4049"},"institutions":[{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Heng Hu","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","College of Life Science, Northeast Forestry University , Harbin 150000 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"College of Life Science, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055263549","display_name":"Zhongjun Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zhongjun Jiang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","College of Life Science, Northeast Forestry University , Harbin 150000 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"College of Life Science, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066648855","display_name":"Shuqi Cao","orcid":"https://orcid.org/0000-0002-1163-2797"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuqi Cao","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100649978","display_name":"Guohua Wang","orcid":"https://orcid.org/0000-0001-7381-2374"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohua Wang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100599476","display_name":"Yuming Zhao","orcid":"https://orcid.org/0000-0001-7219-0999"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuming Zhao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , Harbin 150000 ,","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037643151","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0002-0673-8503"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 ,","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5075906577"],"corresponding_institution_ids":["https://openalex.org/I2802805919","https://openalex.org/I47689461"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.1004,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.96578062,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.777712345123291},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6642013192176819},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5357889533042908},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5108720660209656},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4869612157344818},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48338475823402405},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45470625162124634},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.4244411289691925},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3265853524208069},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09473976492881775}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.777712345123291},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6642013192176819},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5357889533042908},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5108720660209656},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4869612157344818},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48338475823402405},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45470625162124634},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.4244411289691925},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3265853524208069},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09473976492881775},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf203","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf203/63131233/bbaf203.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40341921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40341921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12062572","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12062572","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf203","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf203/63131233/bbaf203.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1719162086","display_name":null,"funder_award_id":"2022YFF1202101","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1856997825","display_name":null,"funder_award_id":"62472120","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1939021808","display_name":null,"funder_award_id":"62272094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3176249059","display_name":null,"funder_award_id":"62225109","funder_id":"https://openalex.org/F4320336125","funder_display_name":"National Science Fund for Distinguished Young Scholars"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3391339377","display_name":null,"funder_award_id":"62225109","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G615567536","display_name":"Transdisciplinary Research in Graduate Engineering Education","funder_award_id":"2225109","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8050651220","display_name":null,"funder_award_id":"202101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G870551797","display_name":null,"funder_award_id":"62225109","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336125","display_name":"National Science Fund for Distinguished Young Scholars","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410216721.pdf","grobid_xml":"https://content.openalex.org/works/W4410216721.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1980066896","https://openalex.org/W1984092261","https://openalex.org/W1985690171","https://openalex.org/W2067191022","https://openalex.org/W2099259774","https://openalex.org/W2116126626","https://openalex.org/W2119907069","https://openalex.org/W2195724570","https://openalex.org/W2235737683","https://openalex.org/W2582800429","https://openalex.org/W2779975541","https://openalex.org/W2801006204","https://openalex.org/W2807567209","https://openalex.org/W2950121474","https://openalex.org/W2951764279","https://openalex.org/W2963186762","https://openalex.org/W2990344913","https://openalex.org/W3007172120","https://openalex.org/W3022783334","https://openalex.org/W3033870872","https://openalex.org/W3034581902","https://openalex.org/W3046401484","https://openalex.org/W3088711112","https://openalex.org/W3099936900","https://openalex.org/W3112640289","https://openalex.org/W3124539583","https://openalex.org/W3128782210","https://openalex.org/W3134518262","https://openalex.org/W3160770927","https://openalex.org/W3175842380","https://openalex.org/W4213019189","https://openalex.org/W4225799922","https://openalex.org/W4229918239","https://openalex.org/W4289515190","https://openalex.org/W4295896785","https://openalex.org/W4311080873","https://openalex.org/W4323311619","https://openalex.org/W4386113054","https://openalex.org/W4391110654","https://openalex.org/W4392089907","https://openalex.org/W4392959248","https://openalex.org/W4403572576","https://openalex.org/W6873784801"],"related_works":["https://openalex.org/W4391621807","https://openalex.org/W4298130764","https://openalex.org/W2804364458","https://openalex.org/W2770593030","https://openalex.org/W4321487865","https://openalex.org/W3154990682","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W4313906399","https://openalex.org/W2090259340"],"abstract_inverted_index":{"Structural":[0],"variations":[1],"(SVs)":[2],"are":[3,11,19],"genomic":[4],"rearrangements":[5],"larger":[6],"than":[7],"50":[8],"bp,":[9],"that":[10,137],"widely":[12],"present":[13],"in":[14,150],"the":[15,41,101,151],"human":[16],"genome":[17],"and":[18,52,62,83,89,134,163],"associated":[20],"with":[21,146],"various":[22,142],"complex":[23],"diseases.":[24],"Existing":[25],"long-read-based":[26],"SV":[27,44,56,76,91],"detection":[28],"tools":[29],"often":[30],"rely":[31],"on":[32],"fixed":[33],"rules":[34],"or":[35],"heuristic":[36],"algorithms,":[37],"which":[38,106],"can":[39],"oversimplify":[40],"complexity":[42],"of":[43,96,115,122,144],"signatures.":[45],"Therefore,":[46],"these":[47,66],"methods":[48],"usually":[49],"lack":[50],"flexibility":[51],"cannot":[53],"fully":[54],"capture":[55,86],"signals,":[57],"leading":[58],"to":[59,85,111],"reduced":[60],"accuracy":[61],"robustness.":[63],"To":[64],"address":[65],"issues,":[67],"we":[68],"propose":[69],"SVHunter,":[70],"a":[71,119,147],"transformer-based":[72],"method":[73],"for":[74,160],"long-read":[75],"detection.":[77],"SVHunter":[78,99,138],"combines":[79],"convolutional":[80],"neural":[81],"networks":[82],"transformers":[84],"both":[87,161],"local":[88],"global":[90],"signatures,":[92],"enabling":[93],"accurate":[94],"identification":[95],"SVs.":[97],"Additionally,":[98],"employs":[100],"mean":[102],"shift":[103],"clustering":[104],"algorithm,":[105],"dynamically":[107],"adjusts":[108],"bandwidth":[109],"parameters":[110],"accommodate":[112],"different":[113],"types":[114,143],"SVs":[116],"without":[117],"requiring":[118],"preset":[120],"number":[121],"clusters,":[123],"thus":[124],"allowing":[125],"precise":[126],"breakpoint":[127],"clustering.":[128],"Validation":[129],"across":[130],"multiple":[131],"sequencing":[132],"platforms":[133],"datasets":[135],"demonstrates":[136],"excels":[139],"at":[140],"detecting":[141],"SVs,":[145],"notable":[148],"reduction":[149],"false":[152],"discovery":[153],"rate.":[154],"This":[155],"highlights":[156],"considerable":[157],"strong":[158],"potential":[159],"research":[162],"clinical":[164],"applications.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
