{"id":"https://openalex.org/W4409609765","doi":"https://doi.org/10.1093/bib/bbaf174","title":"STForte: tissue context-specific encoding and consistency-aware spatial imputation for spatially resolved transcriptomics","display_name":"STForte: tissue context-specific encoding and consistency-aware spatial imputation for spatially resolved transcriptomics","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4409609765","doi":"https://doi.org/10.1093/bib/bbaf174","pmid":"https://pubmed.ncbi.nlm.nih.gov/40254832"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf174","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf174","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf174/62958281/bbaf174.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf174/62958281/bbaf174.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070743854","display_name":"Yuxuan Pang","orcid":"https://orcid.org/0000-0002-6778-7034"},"institutions":[{"id":"https://openalex.org/I2801663168","display_name":"Chinese National Human Genome Center","ror":"https://ror.org/01wq93z70","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2801663168"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["CN","JP"],"is_corresponding":true,"raw_author_name":"Yuxuan Pang","raw_affiliation_strings":["Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,"],"raw_orcid":"https://orcid.org/0000-0002-6778-7034","affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I2801663168"]},{"raw_affiliation_string":"The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031037247","display_name":"Chunxuan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunxuan Wang","raw_affiliation_strings":["School of Data Science, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data Science, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101711221","display_name":"Yaozhong Zhang","orcid":"https://orcid.org/0000-0001-5598-2521"},"institutions":[{"id":"https://openalex.org/I2801663168","display_name":"Chinese National Human Genome Center","ror":"https://ror.org/01wq93z70","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2801663168"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Yao-zhong Zhang","raw_affiliation_strings":["Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,"],"raw_orcid":"https://orcid.org/0000-0001-5598-2521","affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I2801663168"]},{"raw_affiliation_string":"The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100446592","display_name":"Zhuo Wang","orcid":"https://orcid.org/0000-0002-7076-8432"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zhuo Wang","raw_affiliation_strings":["School of Medicine, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","The Chinese University of Hong Kong , School of Medicine, , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","Warshel Institute for Computational Biology , School of Medicine, , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,"],"raw_orcid":"https://orcid.org/0000-0002-7076-8432","affiliations":[{"raw_affiliation_string":"School of Medicine, The Chinese University of Hong Kong , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"The Chinese University of Hong Kong , School of Medicine, , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Warshel Institute for Computational Biology , School of Medicine, , Shenzhen (CUHK-Shenzhen), 2001 Longxiang Road, Longgang, Shenzhen, 518172 ,","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090788230","display_name":"Seiya Imoto","orcid":"https://orcid.org/0000-0002-2989-308X"},"institutions":[{"id":"https://openalex.org/I2801663168","display_name":"Chinese National Human Genome Center","ror":"https://ror.org/01wq93z70","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2801663168"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Seiya Imoto","raw_affiliation_strings":["Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I2801663168"]},{"raw_affiliation_string":"The University of Tokyo , Human Genome Center, The Institute of Medical Science, , 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639 ,","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002567070","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0009-0002-0283-7712"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE","TW"],"is_corresponding":false,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University , No. 75 Bo-Ai Street, Hsinchu 300 ,"],"raw_orcid":"https://orcid.org/0009-0002-0283-7712","affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University , No. 75 Bo-Ai Street, Hsinchu 300 ,","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I4210100097"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070743854"],"corresponding_institution_ids":["https://openalex.org/I2801663168","https://openalex.org/I74801974"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06732619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7560158967971802},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5544605851173401},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5262657403945923},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4775168001651764},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.46720048785209656},{"id":"https://openalex.org/keywords/spatial-contextual-awareness","display_name":"Spatial contextual awareness","score":0.46072816848754883},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4310700297355652},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41941338777542114},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4119792580604553},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.4101225733757019},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37747812271118164},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.15402761101722717},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10091280937194824}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7560158967971802},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5544605851173401},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5262657403945923},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4775168001651764},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.46720048785209656},{"id":"https://openalex.org/C64754055","wikidata":"https://www.wikidata.org/wiki/Q7574053","display_name":"Spatial contextual awareness","level":2,"score":0.46072816848754883},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4310700297355652},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41941338777542114},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4119792580604553},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.4101225733757019},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37747812271118164},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.15402761101722717},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10091280937194824},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf174","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf174","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf174/62958281/bbaf174.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40254832","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40254832","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12009714","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12009714","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf174","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf174","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf174/62958281/bbaf174.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1634587307","display_name":null,"funder_award_id":"113-2634-F-039-001","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G3196369261","display_name":null,"funder_award_id":"113-2321-B-A49-025","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G3250728813","display_name":null,"funder_award_id":"113-2221-E-A49-160-MY3","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G480505638","display_name":null,"funder_award_id":"NSTC 113-2740-B-400-005","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G7024535418","display_name":null,"funder_award_id":"NHRI-EX113-11320BI","funder_id":"https://openalex.org/F4320322845","funder_display_name":"National Health Research Institutes"},{"id":"https://openalex.org/G774430042","display_name":null,"funder_award_id":"113-2634-F-039-001","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G902987778","display_name":null,"funder_award_id":"NHRI-EX114-11320BI","funder_id":"https://openalex.org/F4320322845","funder_display_name":"National Health Research Institutes"}],"funders":[{"id":"https://openalex.org/F2461203286","display_name":"National Science and Technology Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320311039","display_name":"Ministry of Higher Education and Scientific Research","ror":"https://ror.org/00kab6t91"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320322845","display_name":"National Health Research Institutes","ror":"https://ror.org/02r6fpx29"},{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409609765.pdf","grobid_xml":"https://content.openalex.org/works/W4409609765.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W1544225130","https://openalex.org/W1892430921","https://openalex.org/W1929849064","https://openalex.org/W1966183396","https://openalex.org/W1969272808","https://openalex.org/W1973993279","https://openalex.org/W1974565082","https://openalex.org/W1974881805","https://openalex.org/W1984653140","https://openalex.org/W1988216749","https://openalex.org/W1989398031","https://openalex.org/W1992187118","https://openalex.org/W1993652778","https://openalex.org/W1997874433","https://openalex.org/W2000354287","https://openalex.org/W2003936872","https://openalex.org/W2007187686","https://openalex.org/W2009963071","https://openalex.org/W2019054423","https://openalex.org/W2021850762","https://openalex.org/W2023273195","https://openalex.org/W2030926202","https://openalex.org/W2031215175","https://openalex.org/W2035025978","https://openalex.org/W2046485522","https://openalex.org/W2062506147","https://openalex.org/W2070868766","https://openalex.org/W2074660641","https://openalex.org/W2095555940","https://openalex.org/W2104678674","https://openalex.org/W2118717853","https://openalex.org/W2122268197","https://openalex.org/W2123003185","https://openalex.org/W2129977027","https://openalex.org/W2131681506","https://openalex.org/W2149639441","https://openalex.org/W2165011857","https://openalex.org/W2178232667","https://openalex.org/W2295598076","https://openalex.org/W2471536144","https://openalex.org/W2479420012","https://openalex.org/W2519132385","https://openalex.org/W2608064877","https://openalex.org/W2616263591","https://openalex.org/W2755050428","https://openalex.org/W2808189115","https://openalex.org/W2896334009","https://openalex.org/W2896715898","https://openalex.org/W2897249806","https://openalex.org/W2899235059","https://openalex.org/W2911796814","https://openalex.org/W2915848182","https://openalex.org/W2945057866","https://openalex.org/W2966961260","https://openalex.org/W2972983657","https://openalex.org/W2984472267","https://openalex.org/W3081332038","https://openalex.org/W3092835783","https://openalex.org/W3099768174","https://openalex.org/W3106188259","https://openalex.org/W3108118546","https://openalex.org/W3119379269","https://openalex.org/W3154147113","https://openalex.org/W3165120573","https://openalex.org/W3165959565","https://openalex.org/W3190202966","https://openalex.org/W3217269355","https://openalex.org/W4205611713","https://openalex.org/W4206359416","https://openalex.org/W4206978722","https://openalex.org/W4206982763","https://openalex.org/W4210853280","https://openalex.org/W4220765701","https://openalex.org/W4224282976","https://openalex.org/W4225376662","https://openalex.org/W4226192560","https://openalex.org/W4226255823","https://openalex.org/W4229033508","https://openalex.org/W4284885575","https://openalex.org/W4306406844","https://openalex.org/W4309918428","https://openalex.org/W4317478285","https://openalex.org/W4317655932","https://openalex.org/W4317757307","https://openalex.org/W4320013936","https://openalex.org/W4322738920","https://openalex.org/W4327680958","https://openalex.org/W4385651019","https://openalex.org/W4385987383","https://openalex.org/W4387245505","https://openalex.org/W4390500930","https://openalex.org/W4390814844","https://openalex.org/W4392868645","https://openalex.org/W4399970333","https://openalex.org/W6685777803","https://openalex.org/W6855051669"],"related_works":["https://openalex.org/W3148227991","https://openalex.org/W1486593826","https://openalex.org/W2771174107","https://openalex.org/W1536965844","https://openalex.org/W2344941099","https://openalex.org/W4322212724","https://openalex.org/W2106788855","https://openalex.org/W3081561710","https://openalex.org/W2477413883","https://openalex.org/W2463773089"],"abstract_inverted_index":{"Encoding":[0],"spatially":[1],"resolved":[2],"transcriptomics":[3],"(SRT)":[4],"data":[5,188],"serves":[6],"to":[7,84,109,143,158],"identify":[8],"the":[9,16,24,65,111,145,160],"biological":[10,146],"semantics":[11],"of":[12,34,64,80,117,148,165],"RNA":[13],"expression":[14,55,115],"within":[15],"tissue":[17,66,132],"while":[18,48],"preserving":[19],"spatial":[20,46,59,112,137,141,187],"characteristics.":[21],"Depending":[22],"on":[23,30,45],"analytical":[25],"scenario,":[26],"one":[27],"may":[28],"focus":[29],"different":[31,168],"contextual":[32],"structures":[33],"tissues.":[35],"For":[36],"instance,":[37],"anatomical":[38],"regions":[39],"reveal":[40],"consistent":[41],"patterns":[42,79,147],"by":[43,128],"focusing":[44],"homogeneity,":[47],"elucidating":[49],"complex":[50],"tumor":[51],"micro-environments":[52],"requires":[53],"more":[54],"heterogeneity.":[56],"However,":[57],"current":[58],"encoding":[60],"methods":[61],"lack":[62],"consideration":[63],"context.":[67],"Meanwhile,":[68],"most":[69],"developed":[70],"SRT":[71,118,161,171],"technologies":[72],"are":[73],"still":[74],"limited":[75],"in":[76],"providing":[77,155,183],"exact":[78],"intact":[81],"tissues":[82],"due":[83],"limitations":[85],"such":[86],"as":[87],"low":[88],"resolution":[89],"or":[90,151],"missed":[91],"measurements.":[92],"Here,":[93],"we":[94],"propose":[95],"STForte,":[96],"a":[97,177],"novel":[98],"pairwise":[99],"graph":[100],"autoencoder-based":[101],"approach":[102],"with":[103],"cross-reconstruction":[104],"and":[105,114,170,179],"adversarial":[106],"distribution":[107],"matching,":[108],"model":[110],"homogeneity":[113],"heterogeneity":[116],"data.":[119],"STForte":[120,135,175],"extracts":[121],"interpretable":[122],"latent":[123],"encodings,":[124],"enabling":[125],"downstream":[126],"analysis":[127],"accurately":[129],"portraying":[130],"various":[131],"contexts.":[133],"Moreover,":[134],"allows":[136],"imputation":[138],"using":[139],"only":[140],"consistency":[142],"restore":[144],"unobserved":[149],"locations":[150],"low-quality":[152],"cells,":[153],"thereby":[154],"fine-grained":[156],"views":[157],"enhance":[159],"analysis.":[162,189],"Extensive":[163],"evaluations":[164],"datasets":[166],"under":[167],"scenarios":[169],"platforms":[172],"demonstrate":[173],"that":[174],"is":[176],"scalable":[178],"versatile":[180],"tool":[181],"for":[182],"enhanced":[184],"insights":[185],"into":[186]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
