{"id":"https://openalex.org/W4409483444","doi":"https://doi.org/10.1093/bib/bbaf168","title":"Assessing the impact of batch effect associated missing values on downstream analysis in high-throughput biomedical data","display_name":"Assessing the impact of batch effect associated missing values on downstream analysis in high-throughput biomedical data","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4409483444","doi":"https://doi.org/10.1093/bib/bbaf168","pmid":"https://pubmed.ncbi.nlm.nih.gov/40230039"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf168","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf168/62927483/bbaf168.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf168/62927483/bbaf168.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090984265","display_name":"Harvard Wai Hann Hui","orcid":"https://orcid.org/0000-0002-5345-3535"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","SG"],"is_corresponding":false,"raw_author_name":"Harvard Wai Hann Hui","raw_affiliation_strings":["Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005","https://openalex.org/I4210118524"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012445368","display_name":"Wei Xin Chan","orcid":"https://orcid.org/0009-0001-5721-8591"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]}],"countries":["FR","SG"],"is_corresponding":false,"raw_author_name":"Wei Xin Chan","raw_affiliation_strings":["Center for Biomedical Informatics, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","Center for Biomedical Informatics, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005","https://openalex.org/I4210118524"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054040512","display_name":"Wilson Wen Bin Goh","orcid":"https://orcid.org/0000-0003-3863-7501"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I2801748203","display_name":"Hammersmith Hospital","ror":"https://ror.org/05jg8yp15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I153355300","https://openalex.org/I2801748203"]},{"id":"https://openalex.org/I4210118524","display_name":"Universit\u00e9 Bourgogne Franche-Comt\u00e9","ror":"https://ror.org/02dn7x778","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210118524"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["FR","GB","SG"],"is_corresponding":false,"raw_author_name":"Wilson Wen Bin Goh","raw_affiliation_strings":["Center for Artificial Intelligence in Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","Center for Biomedical Informatics, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","Division of Neurology , Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, , Du Cane Road, London W12 0NN ,","Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","School of Biological Sciences, Nanyang Technological University , 60 Nanyang Drive, Singapore 637551 ,","The Hammersmith Hospital , Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, , Du Cane Road, London W12 0NN ,","Center for Artificial Intelligence in Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","Division of Neurology, Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, The Hammersmith Hospital, Du Cane Road, London W12 0NN, United Kingdom","Center for Biomedical Informatics, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence in Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Division of Neurology , Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, , Du Cane Road, London W12 0NN ,","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University , 59 Nanyang Drive, Singapore 636921 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University , 60 Nanyang Drive, Singapore 637551 ,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"The Hammersmith Hospital , Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, , Du Cane Road, London W12 0NN ,","institution_ids":["https://openalex.org/I2801748203"]},{"raw_affiliation_string":"Center for Artificial Intelligence in Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005","https://openalex.org/I4210118524"]},{"raw_affiliation_string":"Division of Neurology, Department of Brain Sciences, Faculty of Medicine, Imperial College London, Burlington Danes, The Hammersmith Hospital, Du Cane Road, London W12 0NN, United Kingdom","institution_ids":["https://openalex.org/I2801748203"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Nanyang Technological University, 59 Nanyang Drive, Singapore 636921, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":15.8429,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.98671712,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.7847999930381775,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.7847999930381775,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.7515000104904175,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7475000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/downstream","display_name":"Downstream (manufacturing)","score":0.7664519548416138},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.6986005902290344},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5896610021591187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5184842944145203},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3919283449649811},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3800792098045349},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19814404845237732},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12180769443511963},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10139763355255127},{"id":"https://openalex.org/keywords/operations-management","display_name":"Operations management","score":0.07765796780586243}],"concepts":[{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.7664519548416138},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.6986005902290344},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5896610021591187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5184842944145203},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3919283449649811},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3800792098045349},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19814404845237732},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12180769443511963},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10139763355255127},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.07765796780586243},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaf168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf168","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf168/62927483/bbaf168.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40230039","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40230039","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/202126","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/202126","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12066825","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12066825","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf168","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf168","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf168/62927483/bbaf168.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1482925484","display_name":null,"funder_award_id":"Tier 1","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G5711554658","display_name":null,"funder_award_id":"RS08/21","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G70197230","display_name":null,"funder_award_id":"RS08/21 and RT11/21","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G8391161409","display_name":null,"funder_award_id":"RT11/21","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"}],"funders":[{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409483444.pdf","grobid_xml":"https://content.openalex.org/works/W4409483444.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W2000403772","https://openalex.org/W2079752406","https://openalex.org/W2096192437","https://openalex.org/W2107665951","https://openalex.org/W2116650193","https://openalex.org/W2125419939","https://openalex.org/W2146512944","https://openalex.org/W2169353806","https://openalex.org/W2278988761","https://openalex.org/W2515569507","https://openalex.org/W2562577192","https://openalex.org/W2593885388","https://openalex.org/W2603756957","https://openalex.org/W2619796081","https://openalex.org/W2792693509","https://openalex.org/W2794891507","https://openalex.org/W2951837249","https://openalex.org/W2963597305","https://openalex.org/W2979573534","https://openalex.org/W3013516198","https://openalex.org/W3032989484","https://openalex.org/W3087749616","https://openalex.org/W3088712245","https://openalex.org/W3124839450","https://openalex.org/W3196242974","https://openalex.org/W4285091020","https://openalex.org/W4308302978","https://openalex.org/W4308605043","https://openalex.org/W4321455337","https://openalex.org/W4367057034","https://openalex.org/W4386468546","https://openalex.org/W4386470877","https://openalex.org/W4386498759"],"related_works":["https://openalex.org/W4380150146","https://openalex.org/W3024870410","https://openalex.org/W2410652950","https://openalex.org/W1583765404","https://openalex.org/W4283773154","https://openalex.org/W3139174110","https://openalex.org/W4289597203","https://openalex.org/W2085630472","https://openalex.org/W4285201053","https://openalex.org/W2753779043"],"abstract_inverted_index":{"Batch":[0],"effect":[1,41,144],"associated":[2],"missing":[3,35],"values":[4],"(BEAMs)":[5],"are":[6],"batch-wide":[7],"missingness":[8],"induced":[9],"from":[10],"the":[11,54,90,142,154,159],"integration":[12],"of":[13,18,50,145,161,190],"data":[14,27,176],"with":[15,85,130,150],"different":[16],"coverage":[17],"biomedical":[19],"features.":[20],"BEAMs":[21,33,95,146,169],"can":[22],"present":[23],"substantial":[24],"challenges":[25],"in":[26,101,124,148,153,170],"analysis.":[28],"This":[29],"study":[30],"investigates":[31],"how":[32],"impact":[34],"value":[36],"imputation":[37,129],"(MVI)":[38],"and":[39,48,81,87,108,114,132,164,178,187],"batch":[40],"(BE)":[42],"correction":[43],"algorithms":[44],"(BECAs).":[45],"Through":[46],"simulations":[47,186],"analyses":[49],"real-world":[51],"datasets":[52,172],"including":[53],"Clinical":[55],"Proteomic":[56],"Tumour":[57],"Analysis":[58],"Consortium":[59],"(CPTAC),":[60],"we":[61],"evaluated":[62],"six":[63],"MVI":[64,98,192],"methods:":[65],"K-nearest":[66],"neighbors":[67],"(KNN),":[68],"Mean,":[69],"MinProb,":[70],"Singular":[71],"Value":[72],"Decomposition":[73],"(SVD),":[74],"Multivariate":[75],"Imputation":[76],"by":[77],"Chained":[78],"Equations":[79],"(MICE),":[80],"Random":[82],"Forest":[83],"(RF),":[84],"ComBat":[86],"limma":[88],"as":[89],"BECAs.":[91],"We":[92],"demonstrated":[93],"that":[94],"strongly":[96],"affect":[97],"performance,":[99],"resulting":[100,123],"inaccurate":[102],"imputed":[103],"values,":[104],"inflated":[105],"significant":[106],"P-values,":[107],"compromised":[109],"BE":[110],"correction.":[111],"KNN,":[112],"SVD,":[113],"RF":[115],"were":[116,134,138],"particularly":[117],"prone":[118],"to":[119,167,173,194],"propagating":[120],"random":[121],"signals,":[122],"false":[125],"statistical":[126],"confidence.":[127],"While":[128],"Mean":[131],"MinProb":[133],"less":[135],"detrimental,":[136],"artifacts":[137],"nonetheless":[139],"introduced.":[140],"Furthermore,":[141],"detrimental":[143],"increased":[147],"parallel":[149],"its":[151],"severity":[152],"data.":[155],"Our":[156],"findings":[157],"highlight":[158],"necessity":[160],"comprehensive":[162],"assessments":[163],"tailored":[165],"strategies":[166],"handle":[168],"multi-batch":[171],"ensure":[174],"reliable":[175],"analysis":[177],"interpretation.":[179],"Future":[180],"work":[181],"should":[182],"investigate":[183],"more":[184],"advanced":[185],"a":[188],"variety":[189],"dedicated":[191],"methods":[193],"robustly":[195],"address":[196],"BEAMs.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":3}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
