{"id":"https://openalex.org/W4409589127","doi":"https://doi.org/10.1093/bib/bbaf151","title":"A graph neural network approach for accurate prediction of pathogenicity in multi-type variants","display_name":"A graph neural network approach for accurate prediction of pathogenicity in multi-type variants","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4409589127","doi":"https://doi.org/10.1093/bib/bbaf151","pmid":"https://pubmed.ncbi.nlm.nih.gov/40251830"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf151","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf151/62955770/bbaf151.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf151/62955770/bbaf151.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Hongtao Yu","orcid":"https://orcid.org/0009-0006-4967-3515"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongtao Yu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":"https://orcid.org/0009-0006-4967-3515","affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004180738","display_name":"Guojing He","orcid":"https://orcid.org/0000-0003-0716-0464"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guojing He","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100757829","display_name":"Wei Wang","orcid":"https://orcid.org/0000-0002-8598-0831"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Wang","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]},{"raw_affiliation_string":"College of Computer Science and Technology, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Senbiao Qin","orcid":null},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Senbiao Qin","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445337","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0003-1253-7465"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048591796","display_name":"Mingze Bai","orcid":"https://orcid.org/0000-0002-9782-2056"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingze Bai","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072776409","display_name":"Kunxian Shu","orcid":"https://orcid.org/0000-0003-4487-2727"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kunxian Shu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":"https://orcid.org/0000-0003-4487-2727","affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101498650","display_name":"Dan Pu","orcid":"https://orcid.org/0000-0002-0156-898X"},"institutions":[{"id":"https://openalex.org/I10535382","display_name":"Chongqing University of Posts and Telecommunications","ror":"https://ror.org/03dgaqz26","country_code":"CN","type":"education","lineage":["https://openalex.org/I10535382"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Pu","raw_affiliation_strings":["Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chongqing Key Laboratory of Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications , No. 2 Chongwen Road, Nan'an District, Chongqing 400065 ,","institution_ids":["https://openalex.org/I10535382"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I10535382"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":10.5969,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.9838095,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.8574294447898865},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5780965089797974},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5438528656959534},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5390611886978149},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5300659537315369},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5152645111083984},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48659026622772217},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.45494934916496277},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.349953293800354},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2632625997066498},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1102544367313385}],"concepts":[{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.8574294447898865},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5780965089797974},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5438528656959534},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5390611886978149},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5300659537315369},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5152645111083984},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48659026622772217},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.45494934916496277},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.349953293800354},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2632625997066498},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1102544367313385},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf151","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf151/62955770/bbaf151.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40251830","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40251830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12008122","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12008122","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf151","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf151/62955770/bbaf151.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G4737017817","display_name":null,"funder_award_id":"CSTB2024NSCQ-KJFZMSX0036","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"},{"id":"https://openalex.org/G504305494","display_name":null,"funder_award_id":"CSTB2024NSCQ","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"}],"funders":[{"id":"https://openalex.org/F4320323172","display_name":"Natural Science Foundation of Chongqing","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327639","display_name":"Centre Scientifique et Technique du B\u00e2timent","ror":"https://ror.org/02fsd1928"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409589127.pdf","grobid_xml":"https://content.openalex.org/works/W4409589127.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1563940013","https://openalex.org/W1925054293","https://openalex.org/W1970413157","https://openalex.org/W1980740976","https://openalex.org/W1984068087","https://openalex.org/W1990725675","https://openalex.org/W2001280003","https://openalex.org/W2018363492","https://openalex.org/W2036887984","https://openalex.org/W2101234009","https://openalex.org/W2111326065","https://openalex.org/W2122111042","https://openalex.org/W2129952088","https://openalex.org/W2132312350","https://openalex.org/W2156555211","https://openalex.org/W2174602966","https://openalex.org/W2242464395","https://openalex.org/W2521967673","https://openalex.org/W2535426958","https://openalex.org/W2561976741","https://openalex.org/W2604078450","https://openalex.org/W2612196455","https://openalex.org/W2883972171","https://openalex.org/W2889284790","https://openalex.org/W2891643925","https://openalex.org/W2905452503","https://openalex.org/W2907492528","https://openalex.org/W2909194804","https://openalex.org/W2948505931","https://openalex.org/W2970119293","https://openalex.org/W2972317931","https://openalex.org/W3043450424","https://openalex.org/W3080696152","https://openalex.org/W3095866415","https://openalex.org/W3104285666","https://openalex.org/W3123287010","https://openalex.org/W3152893301","https://openalex.org/W3188579603","https://openalex.org/W3209435229","https://openalex.org/W3212244311","https://openalex.org/W3216782976","https://openalex.org/W4205278093","https://openalex.org/W4206693666","https://openalex.org/W4213149192","https://openalex.org/W4214674964","https://openalex.org/W4220920955","https://openalex.org/W4225982858","https://openalex.org/W4292449061","https://openalex.org/W4295312788","https://openalex.org/W4386861232","https://openalex.org/W4388921175","https://openalex.org/W4390279263","https://openalex.org/W4390655913","https://openalex.org/W4391964006","https://openalex.org/W4392747765","https://openalex.org/W4402126606","https://openalex.org/W6631190155","https://openalex.org/W6675354045","https://openalex.org/W6766978945","https://openalex.org/W6767288045","https://openalex.org/W6799923563","https://openalex.org/W7073753605"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W4405124681","https://openalex.org/W1533177136","https://openalex.org/W4380994516"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,40,89,108],"of":[2,28,61,90,93,109,128],"pathogenic":[3],"variants":[4,56,95],"in":[5,74,105,117,144],"human":[6],"disease-associated":[7],"genes":[8],"would":[9],"have":[10],"a":[11,20,42],"profound":[12],"effect":[13],"on":[14,65],"clinical":[15,147],"decision-making;":[16],"however,":[17],"it":[18,101],"remains":[19],"significant":[21,140],"challenge":[22],"due":[23],"to":[24,57,130],"the":[25,59,66,91,106,125],"overwhelming":[26],"number":[27],"these":[29],"variants.":[30,63],"We":[31],"propose":[32],"graph":[33],"neural":[34],"network":[35],"for":[36,142],"multimodal":[37,50],"annotation-based":[38],"pathogenicity":[39,60,92,107,132],"(GNN-MAP),":[41],"novel":[43],"deep":[44],"learning":[45],"framework":[46],"that":[47,124],"effectively":[48],"integrates":[49],"annotations":[51],"and":[52,77,96,137,146],"similarity":[53],"relationships":[54],"among":[55],"predict":[58,131],"multi-type":[62],"Trained":[64],"ClinVar":[67],"dataset,":[68],"GNN-MAP":[69,86,129],"exhibits":[70],"superior":[71],"predictive":[72],"performance":[73,104],"internal":[75],"validation":[76],"orthogonal":[78],"test":[79],"datasets,":[80],"accurately":[81],"predicting":[82],"variant":[83,119,135],"pathogenicity.":[84],"Notably,":[85],"enables":[87],"accurate":[88],"rare":[94],"highly":[97],"imbalanced":[98],"datasets.":[99],"Furthermore,":[100],"achieves":[102],"high":[103],"inherited":[110],"retinal":[111],"disease-specific":[112,118],"variants,":[113],"highlighting":[114],"its":[115],"effectiveness":[116],"prediction.":[120],"These":[121],"findings":[122],"suggest":[123],"robust":[126],"capability":[127],"across":[133],"multiple":[134],"types":[136],"datasets":[138],"holds":[139],"potential":[141],"applications":[143],"research":[145],"settings.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
