{"id":"https://openalex.org/W4409444976","doi":"https://doi.org/10.1093/bib/bbaf150","title":"A comprehensive review of cancer survival prediction using multi-omics integration and clinical variables","display_name":"A comprehensive review of cancer survival prediction using multi-omics integration and clinical variables","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4409444976","doi":"https://doi.org/10.1093/bib/bbaf150","pmid":"https://pubmed.ncbi.nlm.nih.gov/40221959"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf150","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf150","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf150","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104131383","display_name":"Dao Tran","orcid":"https://orcid.org/0009-0005-8710-6426"},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dao Tran","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007403200","display_name":"Ha Nam Nguyen","orcid":"https://orcid.org/0000-0003-2338-3537"},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ha Nguyen","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108959190","display_name":"Van-Dung Pham","orcid":null},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Van-Dung Pham","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101916877","display_name":"Thi Ngoc Phuong Nguyen","orcid":"https://orcid.org/0000-0002-3615-0698"},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phuong Nguyen","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072644863","display_name":"Hung N. Luu","orcid":"https://orcid.org/0000-0002-2172-1849"},"institutions":[{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]},{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hung Nguyen Luu","raw_affiliation_strings":["Department of Epidemiology , School of Public Health, , 130 De Soto Street, Pittsburgh, PA 15261 ,","UPMC Hillman Cancer Center, University of Pittsburgh Medical Center , 5150 Centre Avenue, Pittsburgh, PA 15232 ,","University of Pittsburgh , School of Public Health, , 130 De Soto Street, Pittsburgh, PA 15261 ,"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology , School of Public Health, , 130 De Soto Street, Pittsburgh, PA 15261 ,","institution_ids":[]},{"raw_affiliation_string":"UPMC Hillman Cancer Center, University of Pittsburgh Medical Center , 5150 Centre Avenue, Pittsburgh, PA 15232 ,","institution_ids":["https://openalex.org/I4210134769","https://openalex.org/I4210128526"]},{"raw_affiliation_string":"University of Pittsburgh , School of Public Health, , 130 De Soto Street, Pittsburgh, PA 15261 ,","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081262245","display_name":"Liem Phan","orcid":"https://orcid.org/0000-0003-1194-216X"},"institutions":[{"id":"https://openalex.org/I2800250139","display_name":"Defense Health Agency","ror":"https://ror.org/03df8gj37","country_code":"US","type":"government","lineage":["https://openalex.org/I1330347796","https://openalex.org/I2800250139","https://openalex.org/I2800386880"]},{"id":"https://openalex.org/I2800811450","display_name":"David Grant USAF Medical Center","ror":"https://ror.org/05ya3ee02","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330347796","https://openalex.org/I1330347796","https://openalex.org/I2800250139","https://openalex.org/I2800386880","https://openalex.org/I2800811450","https://openalex.org/I4210089612","https://openalex.org/I4210102105"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liem Minh Phan","raw_affiliation_strings":["David Grant USAF Medical Center\u2014Clinical Investigation Facility, 60th Medical Group, Defense Health Agency , 101 Bodin Circle, Travis Air Force Base, CA 94535 ,"],"affiliations":[{"raw_affiliation_string":"David Grant USAF Medical Center\u2014Clinical Investigation Facility, 60th Medical Group, Defense Health Agency , 101 Bodin Circle, Travis Air Force Base, CA 94535 ,","institution_ids":["https://openalex.org/I2800250139","https://openalex.org/I2800811450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007480006","display_name":"Christin B. DeStefano","orcid":"https://orcid.org/0000-0002-8890-7760"},"institutions":[{"id":"https://openalex.org/I2800250139","display_name":"Defense Health Agency","ror":"https://ror.org/03df8gj37","country_code":"US","type":"government","lineage":["https://openalex.org/I1330347796","https://openalex.org/I2800250139","https://openalex.org/I2800386880"]},{"id":"https://openalex.org/I2800363604","display_name":"Walter Reed National Military Medical Center","ror":"https://ror.org/025cem651","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330347796","https://openalex.org/I2800250139","https://openalex.org/I2800363604","https://openalex.org/I2800386880"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christin Blair DeStefano","raw_affiliation_strings":["Walter Reed National Military Medical Center, Defense Health Agency , 8901 Rockville Pike, Bethesda, MD 20889 ,"],"affiliations":[{"raw_affiliation_string":"Walter Reed National Military Medical Center, Defense Health Agency , 8901 Rockville Pike, Bethesda, MD 20889 ,","institution_ids":["https://openalex.org/I2800250139","https://openalex.org/I2800363604"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081791823","display_name":"Sai\u2010Ching J. Yeung","orcid":"https://orcid.org/0000-0001-5170-0822"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sai-Ching Jim Yeung","raw_affiliation_strings":["Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center , 1400 Pressler Street, Houston, TX 77030 ,"],"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center , 1400 Pressler Street, Houston, TX 77030 ,","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018043372","display_name":"Tin Nguyen","orcid":"https://orcid.org/0000-0001-8001-9470"},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tin Nguyen","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , 345 W Magnolia Avenue, Auburn, AL 36849 ,","institution_ids":["https://openalex.org/I82497590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5104131383"],"corresponding_institution_ids":["https://openalex.org/I82497590"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":13.6341,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.99190985,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.5800026655197144},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5590147376060486},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5375456809997559},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5022759437561035},{"id":"https://openalex.org/keywords/predictive-modelling","display_name":"Predictive modelling","score":0.4436178505420685},{"id":"https://openalex.org/keywords/metastasis","display_name":"Metastasis","score":0.4406946897506714},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4404979348182678},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.3809210956096649},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3655604124069214},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36304396390914917},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32556578516960144},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.25492483377456665},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.22949829697608948},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2211446464061737},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1836795210838318}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.5800026655197144},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5590147376060486},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5375456809997559},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5022759437561035},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.4436178505420685},{"id":"https://openalex.org/C2779013556","wikidata":"https://www.wikidata.org/wiki/Q181876","display_name":"Metastasis","level":3,"score":0.4406946897506714},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4404979348182678},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.3809210956096649},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3655604124069214},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36304396390914917},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32556578516960144},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.25492483377456665},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.22949829697608948},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2211446464061737},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1836795210838318}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf150","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf150","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40221959","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40221959","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11994034","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11994034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf150","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf150","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G231731041","display_name":null,"funder_award_id":"U01CA274573","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2405032565","display_name":null,"funder_award_id":"2203236","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4739292480","display_name":null,"funder_award_id":"R44GM152152","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G778032529","display_name":null,"funder_award_id":"2023-67022-40041","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G8244293504","display_name":null,"funder_award_id":"2343019","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":151,"referenced_works":["https://openalex.org/W1498436455","https://openalex.org/W1975130349","https://openalex.org/W1980179199","https://openalex.org/W1998712640","https://openalex.org/W2000703258","https://openalex.org/W2004864119","https://openalex.org/W2005655839","https://openalex.org/W2022401242","https://openalex.org/W2028388552","https://openalex.org/W2031821463","https://openalex.org/W2043398720","https://openalex.org/W2052464909","https://openalex.org/W2052692777","https://openalex.org/W2079187345","https://openalex.org/W2084139018","https://openalex.org/W2085107973","https://openalex.org/W2096863518","https://openalex.org/W2100495367","https://openalex.org/W2100697281","https://openalex.org/W2102140136","https://openalex.org/W2108138101","https://openalex.org/W2111094216","https://openalex.org/W2114031931","https://openalex.org/W2116085973","https://openalex.org/W2118883481","https://openalex.org/W2119910794","https://openalex.org/W2120579447","https://openalex.org/W2120985611","https://openalex.org/W2130186848","https://openalex.org/W2130448611","https://openalex.org/W2131241448","https://openalex.org/W2131856634","https://openalex.org/W2132165198","https://openalex.org/W2143273269","https://openalex.org/W2154981570","https://openalex.org/W2157852151","https://openalex.org/W2167292344","https://openalex.org/W2169353806","https://openalex.org/W2170280274","https://openalex.org/W2225109326","https://openalex.org/W2258675270","https://openalex.org/W2285093314","https://openalex.org/W2317700552","https://openalex.org/W2419587273","https://openalex.org/W2464880876","https://openalex.org/W2488022192","https://openalex.org/W2509134444","https://openalex.org/W2521492299","https://openalex.org/W2551829638","https://openalex.org/W2559537906","https://openalex.org/W2561201516","https://openalex.org/W2567080747","https://openalex.org/W2591862054","https://openalex.org/W2611463039","https://openalex.org/W2727328964","https://openalex.org/W2747329762","https://openalex.org/W2771041964","https://openalex.org/W2791015340","https://openalex.org/W2793750436","https://openalex.org/W2797883881","https://openalex.org/W2804413675","https://openalex.org/W2884724578","https://openalex.org/W2894847707","https://openalex.org/W2898789672","https://openalex.org/W2906317964","https://openalex.org/W2909364225","https://openalex.org/W2909472027","https://openalex.org/W2912414418","https://openalex.org/W2921485464","https://openalex.org/W2922815614","https://openalex.org/W2942746533","https://openalex.org/W2944727022","https://openalex.org/W2944869129","https://openalex.org/W2946202501","https://openalex.org/W2949273159","https://openalex.org/W2950517073","https://openalex.org/W2950878899","https://openalex.org/W2951209146","https://openalex.org/W2952294938","https://openalex.org/W2952648465","https://openalex.org/W2953073515","https://openalex.org/W2955502047","https://openalex.org/W2963016155","https://openalex.org/W2980286138","https://openalex.org/W2990138404","https://openalex.org/W2991023348","https://openalex.org/W2996480032","https://openalex.org/W2998556046","https://openalex.org/W3000659041","https://openalex.org/W3001475835","https://openalex.org/W3003192283","https://openalex.org/W3005087874","https://openalex.org/W3010245316","https://openalex.org/W3011403448","https://openalex.org/W3011821385","https://openalex.org/W3013381886","https://openalex.org/W3013462789","https://openalex.org/W3015030919","https://openalex.org/W3020873385","https://openalex.org/W3030286867","https://openalex.org/W3034503810","https://openalex.org/W3038272954","https://openalex.org/W3040723250","https://openalex.org/W3049084893","https://openalex.org/W3094386380","https://openalex.org/W3112653481","https://openalex.org/W3124379712","https://openalex.org/W3133824676","https://openalex.org/W3139023757","https://openalex.org/W3147894994","https://openalex.org/W3156270925","https://openalex.org/W3173875945","https://openalex.org/W3176966473","https://openalex.org/W3177547797","https://openalex.org/W3195971125","https://openalex.org/W3202588279","https://openalex.org/W3202929943","https://openalex.org/W3203084907","https://openalex.org/W3213224786","https://openalex.org/W3216448540","https://openalex.org/W4224289048","https://openalex.org/W4233019352","https://openalex.org/W4244009405","https://openalex.org/W4287981142","https://openalex.org/W4288770119","https://openalex.org/W4292641742","https://openalex.org/W4293241248","https://openalex.org/W4306640162","https://openalex.org/W4312194384","https://openalex.org/W4317805349","https://openalex.org/W4318047381","https://openalex.org/W4318979782","https://openalex.org/W4323036825","https://openalex.org/W4323294508","https://openalex.org/W4323782838","https://openalex.org/W4382462992","https://openalex.org/W4385406244","https://openalex.org/W4386945091","https://openalex.org/W4390613477","https://openalex.org/W4406262333","https://openalex.org/W6604653223","https://openalex.org/W6626481562","https://openalex.org/W6678911119","https://openalex.org/W6722521067","https://openalex.org/W6725881205","https://openalex.org/W6730091202","https://openalex.org/W6731476941","https://openalex.org/W6731743345","https://openalex.org/W6736057607","https://openalex.org/W6756633684","https://openalex.org/W6802001723"],"related_works":["https://openalex.org/W177137871","https://openalex.org/W4292302930","https://openalex.org/W2924366642","https://openalex.org/W4392558563","https://openalex.org/W3159101980","https://openalex.org/W3173875945","https://openalex.org/W2966125521","https://openalex.org/W3003192283","https://openalex.org/W2996736193","https://openalex.org/W3195112886"],"abstract_inverted_index":{"Cancer":[0],"is":[1,47,57,199],"an":[2],"umbrella":[3],"term":[4],"that":[5,15,56,141,241],"includes":[6],"a":[7,210],"wide":[8],"spectrum":[9],"of":[10,41,63,105,164,186,204,213,231],"disease":[11],"severity,":[12],"from":[13],"those":[14],"are":[16],"malignant,":[17],"metastatic,":[18],"and":[19,91,113,128,144,160,167,174,194,207,229,234],"aggressive":[20],"to":[21,34,49,116,147,178,200,208,243],"benign":[22],"lesions":[23],"with":[24,59,180],"very":[25],"low":[26],"potential":[27],"for":[28,84,155],"progression":[29],"or":[30],"death.":[31],"The":[32,197],"ability":[33],"prognosticate":[35],"patient":[36,119,149,182],"outcomes":[37],"would":[38,52],"facilitate":[39],"management":[40],"various":[42],"malignancies:":[43],"patients":[44],"whose":[45],"cancer":[46,75],"likely":[48],"advance":[50],"quickly":[51],"receive":[53],"necessary":[54],"treatment":[55],"commensurate":[58],"the":[60,64,103,162,184,221,227,238],"predicted":[61],"biology":[62],"disease.":[65],"Former":[66],"prognostic":[67,98],"models":[68,99,172],"based":[69],"on":[70],"clinical":[71,114,145,168],"variables":[72,115,169],"(age,":[73],"gender,":[74],"stage,":[76],"tumor":[77,89],"grade,":[78],"etc.),":[79],"though":[80],"helpful,":[81],"cannot":[82],"account":[83],"genetic":[85],"differences,":[86],"molecular":[87,111,165],"etiology,":[88],"heterogeneity,":[90],"important":[92,214],"host":[93],"biological":[94],"mechanisms.":[95],"Therefore,":[96],"recent":[97],"have":[100],"shifted":[101],"toward":[102],"integration":[104,188],"complementary":[106],"information":[107],"available":[108,205],"in":[109,217,236,246],"both":[110],"data":[112,146,187],"better":[117],"predict":[118,148],"outcomes:":[120],"vital":[121],"status":[122],"(overall":[123],"survival),":[124,127],"metastasis":[125],"(metastasis-free":[126],"recurrence":[129],"(progression-free":[130],"survival).":[131],"In":[132],"this":[133],"article,":[134],"we":[135,224],"review":[136,212],"20":[137],"survival":[138,157,218],"prediction":[139,190],"approaches":[140],"integrate":[142],"multi-omics":[143,175],"outcomes.":[150],"We":[151],"discuss":[152,235],"their":[153],"strategies":[154],"modeling":[156],"time":[158],"(continuous":[159],"discrete),":[161],"incorporation":[163],"measurements":[166],"into":[170],"risk":[171],"(clinical":[173],"data),":[176],"how":[177],"cope":[179],"censored":[181],"records,":[183],"effectiveness":[185],"techniques,":[189],"methodologies,":[191],"model":[192],"validation,":[193],"assessment":[195],"metrics.":[196],"goal":[198],"inform":[201],"life":[202],"scientists":[203],"resources,":[206],"provide":[209],"complete":[211],"building":[215],"blocks":[216],"prediction.":[219],"At":[220],"same":[222],"time,":[223],"thoroughly":[225],"describe":[226],"pros":[228],"cons":[230],"each":[232],"methodology,":[233],"depth":[237],"outstanding":[239],"challenges":[240],"need":[242],"be":[244],"addressed":[245],"future":[247],"method":[248],"development.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11}],"updated_date":"2025-12-19T19:40:27.379048","created_date":"2025-10-10T00:00:00"}
