{"id":"https://openalex.org/W4409228901","doi":"https://doi.org/10.1093/bib/bbaf140","title":"MRAgent: an LLM-based automated agent for causal knowledge discovery in disease via Mendelian randomization","display_name":"MRAgent: an LLM-based automated agent for causal knowledge discovery in disease via Mendelian randomization","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4409228901","doi":"https://doi.org/10.1093/bib/bbaf140","pmid":"https://pubmed.ncbi.nlm.nih.gov/40194554"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf140","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf140/62885664/bbaf140.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf140/62885664/bbaf140.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100407947","display_name":"Wei Xu","orcid":"https://orcid.org/0000-0003-3708-6816"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":true,"raw_author_name":"Wei Xu","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040882970","display_name":"Gang Luo","orcid":"https://orcid.org/0000-0002-2234-6542"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Gang Luo","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101259632","display_name":"Weiyu Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Weiyu Meng","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051498469","display_name":"Xiaobing Zhai","orcid":"https://orcid.org/0000-0002-4575-7360"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Xiaobing Zhai","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015628309","display_name":"Keli Zheng","orcid":"https://orcid.org/0000-0003-4236-4227"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Keli Zheng","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","The State Key Laboratory of Computer Science , Institute of Software Chinese Academy of Sciences, No. 4, South 4th Street, Zhongguancun, Haidian District, Beijing 100190,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"The State Key Laboratory of Computer Science , Institute of Software Chinese Academy of Sciences, No. 4, South 4th Street, Zhongguancun, Haidian District, Beijing 100190,","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014958566","display_name":"Ji Wu","orcid":"https://orcid.org/0000-0001-6170-726X"},"institutions":[{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ji Wu","raw_affiliation_strings":["School of Computer Science , Zhuhai College of Science and Technology, No. 8, Anji East Road, Sanzao Town, Jinwan District, Zhuhai 519041,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science , Zhuhai College of Science and Technology, No. 8, Anji East Road, Sanzao Town, Jinwan District, Zhuhai 519041,","institution_ids":["https://openalex.org/I4210165204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108053776","display_name":"Yanrong Li","orcid":"https://orcid.org/0000-0002-0206-3473"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yanrong Li","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078323683","display_name":"Abao Xing","orcid":null},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Abao Xing","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104265497","display_name":"Junrong Li","orcid":null},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Junrong Li","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065035571","display_name":"Zhifan Li","orcid":null},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Zhifan Li","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034167545","display_name":"Ke Zheng","orcid":"https://orcid.org/0000-0002-4624-0881"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Ke Zheng","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","The State Key Laboratory of Computer Science , Institute of Software Chinese Academy of Sciences, No. 4, South 4th Street, Zhongguancun, Haidian District, Beijing 100190,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"The State Key Laboratory of Computer Science , Institute of Software Chinese Academy of Sciences, No. 4, South 4th Street, Zhongguancun, Haidian District, Beijing 100190,","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101629009","display_name":"Kefeng Li","orcid":"https://orcid.org/0000-0002-7233-4347"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Kefeng Li","raw_affiliation_strings":["Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,"],"affiliations":[{"raw_affiliation_string":"Centre for Artificial Intelligence Driven Drug Discovery, Macao Polytechnic University , R. de Lu\u00eds Gonzaga Gomes, Macao SAR 999078 ,","institution_ids":["https://openalex.org/I49835588"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100407947"],"corresponding_institution_ids":["https://openalex.org/I49835588"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":23.8935,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.9964916,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mendelian-randomization","display_name":"Mendelian randomization","score":0.8852099180221558},{"id":"https://openalex.org/keywords/causality","display_name":"Causality (physics)","score":0.7932038903236389},{"id":"https://openalex.org/keywords/causal-inference","display_name":"Causal inference","score":0.710120677947998},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6878129243850708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6437534689903259},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5352281928062439},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.527877688407898},{"id":"https://openalex.org/keywords/causation","display_name":"Causation","score":0.5082709193229675},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5074302554130554},{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.5012528896331787},{"id":"https://openalex.org/keywords/psychological-intervention","display_name":"Psychological intervention","score":0.4222680330276489},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4007669985294342},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36547374725341797},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.24182459712028503},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2396712303161621},{"id":"https://openalex.org/keywords/genetic-variants","display_name":"Genetic variants","score":0.09245264530181885}],"concepts":[{"id":"https://openalex.org/C2779901538","wikidata":"https://www.wikidata.org/wiki/Q6816584","display_name":"Mendelian randomization","level":5,"score":0.8852099180221558},{"id":"https://openalex.org/C64357122","wikidata":"https://www.wikidata.org/wiki/Q1149766","display_name":"Causality (physics)","level":2,"score":0.7932038903236389},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.710120677947998},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6878129243850708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6437534689903259},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5352281928062439},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.527877688407898},{"id":"https://openalex.org/C166151441","wikidata":"https://www.wikidata.org/wiki/Q4923601","display_name":"Causation","level":2,"score":0.5082709193229675},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5074302554130554},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.5012528896331787},{"id":"https://openalex.org/C27415008","wikidata":"https://www.wikidata.org/wiki/Q7256382","display_name":"Psychological intervention","level":2,"score":0.4222680330276489},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4007669985294342},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36547374725341797},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.24182459712028503},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2396712303161621},{"id":"https://openalex.org/C2993967602","wikidata":"https://www.wikidata.org/wiki/Q5532932","display_name":"Genetic variants","level":4,"score":0.09245264530181885},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057182","descriptor_name":"Mendelian Randomization Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057182","descriptor_name":"Mendelian Randomization Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057182","descriptor_name":"Mendelian Randomization Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D063369","descriptor_name":"Knowledge Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf140","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf140/62885664/bbaf140.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40194554","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40194554","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:10787906","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11975362","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf140","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf140/62885664/bbaf140.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409228901.pdf","grobid_xml":"https://content.openalex.org/works/W4409228901.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W2033176810","https://openalex.org/W2105161006","https://openalex.org/W2106036991","https://openalex.org/W2232207765","https://openalex.org/W2610930722","https://openalex.org/W2744463954","https://openalex.org/W2770598799","https://openalex.org/W2950796078","https://openalex.org/W2990138404","https://openalex.org/W3048245060","https://openalex.org/W3156636935","https://openalex.org/W3210570897","https://openalex.org/W4211103501","https://openalex.org/W4281557260","https://openalex.org/W4322718191","https://openalex.org/W4363646188","https://openalex.org/W4383605161","https://openalex.org/W4385965642","https://openalex.org/W4388890627","https://openalex.org/W4394989135","https://openalex.org/W4396718668","https://openalex.org/W4399849605","https://openalex.org/W4406800520","https://openalex.org/W6689392195","https://openalex.org/W6778883912","https://openalex.org/W6846254642","https://openalex.org/W6872778218"],"related_works":["https://openalex.org/W2901309888","https://openalex.org/W2169283889","https://openalex.org/W4293531535","https://openalex.org/W4306658544","https://openalex.org/W2129465958","https://openalex.org/W4253624503","https://openalex.org/W4255808401","https://openalex.org/W2574301230","https://openalex.org/W1547624382","https://openalex.org/W4320159092"],"abstract_inverted_index":{"Understanding":[0],"causality":[1,23],"in":[2,78,112,150],"medical":[3],"research":[4],"is":[5,17,155],"essential":[6],"for":[7,21,50,144],"developing":[8],"effective":[9],"interventions":[10],"and":[11,90,105,115,138,146],"diagnostic":[12],"tools.":[13],"Mendelian":[14],"Randomization":[15],"(MR)":[16],"a":[18,117,133,141],"pivotal":[19],"method":[20],"inferring":[22],"through":[24],"genetic":[25],"data.":[26,100],"However,":[27],"MR":[28,92],"analysis":[29],"often":[30],"requires":[31],"pre-identification":[32],"of":[33,55],"exposure-outcome":[34,88],"pairs":[35],"from":[36],"clinical":[37],"experience":[38],"or":[39],"literature,":[40,85],"which":[41],"can":[42],"be":[43],"challenging":[44],"to":[45,73,108,120,127],"obtain.":[46],"This":[47],"poses":[48],"difficulties":[49],"clinicians":[51,139],"investigating":[52],"causal":[53,75,93,130,148],"factors":[54],"specific":[56],"diseases.":[57,152],"To":[58],"address":[59],"this,":[60],"we":[61],"introduce":[62],"MRAgent,":[63],"an":[64],"innovative":[65],"automated":[66,104],"agent":[67],"leveraging":[68],"Large":[69],"Language":[70],"Models":[71],"(LLMs)":[72],"enhance":[74],"knowledge":[76],"discovery":[77],"disease":[79],"research.":[80],"MRAgent":[81,114],"autonomously":[82],"scans":[83],"scientific":[84],"discovers":[86],"potential":[87],"pairs,":[89],"performs":[91],"inference":[94],"using":[95],"extensive":[96],"Genome-Wide":[97],"Association":[98],"Study":[99],"We":[101],"conducted":[102],"both":[103],"human":[106],"evaluations":[107],"compare":[109],"different":[110],"LLMs":[111],"operating":[113],"provided":[116],"proof-of-concept":[118],"case":[119],"demonstrate":[121],"the":[122],"complete":[123],"workflow.":[124],"MRAgent's":[125],"capability":[126],"conduct":[128],"large-scale":[129],"analyses":[131],"represents":[132],"significant":[134],"advancement,":[135],"equipping":[136],"researchers":[137],"with":[140],"robust":[142],"tool":[143],"exploring":[145],"validating":[147],"relationships":[149],"complex":[151],"Our":[153],"code":[154],"public":[156],"at":[157],"https://github.com/xuwei1997/MRAgent.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
