{"id":"https://openalex.org/W4408745389","doi":"https://doi.org/10.1093/bib/bbaf121","title":"Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data","display_name":"Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408745389","doi":"https://doi.org/10.1093/bib/bbaf121","pmid":"https://pubmed.ncbi.nlm.nih.gov/40116660"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf121","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf121/62519504/bbaf121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf121/62519504/bbaf121.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103072305","display_name":"Yongfei Hu","orcid":"https://orcid.org/0000-0002-9288-0994"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongfei Hu","raw_affiliation_strings":["Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China","institution_ids":["https://openalex.org/I58200834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406104","display_name":"Xinyu Li","orcid":"https://orcid.org/0000-0002-3730-0360"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyu Li","raw_affiliation_strings":["Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China","institution_ids":["https://openalex.org/I58200834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451652","display_name":"Ying Yi","orcid":"https://orcid.org/0000-0003-1434-1458"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Yi","raw_affiliation_strings":["Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China","institution_ids":["https://openalex.org/I58200834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037036377","display_name":"Yan Huang","orcid":"https://orcid.org/0000-0002-7940-8468"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Huang","raw_affiliation_strings":["Cancer Research Institute, School of Basic Medical Sciences, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","Cancer Research Institute, School of Basic Medical Sciences, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research Institute, School of Basic Medical Sciences, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Cancer Research Institute, School of Basic Medical Sciences, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China","institution_ids":["https://openalex.org/I58200834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100458578","display_name":"Guangyu Wang","orcid":"https://orcid.org/0000-0003-4094-7031"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210103956","display_name":"Third Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/01f77gp95","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210103956"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangyu Wang","raw_affiliation_strings":["Department of Gastrointestinal Medical Oncology, Harbin Medical University Cancer Hospital , No. 150 Haping Road, Nangang District, Harbin 150000 ,","Department of Gastrointestinal Medical Oncology, Harbin Medical University Cancer Hospital, No. 150 Haping Road, Nangang District, Harbin 150000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastrointestinal Medical Oncology, Harbin Medical University Cancer Hospital , No. 150 Haping Road, Nangang District, Harbin 150000 ,","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]},{"raw_affiliation_string":"Department of Gastrointestinal Medical Oncology, Harbin Medical University Cancer Hospital, No. 150 Haping Road, Nangang District, Harbin 150000, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100391492","display_name":"Dong Wang","orcid":"https://orcid.org/0000-0002-6860-6864"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Wang","raw_affiliation_strings":["Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China","Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China"],"raw_orcid":"https://orcid.org/0000-0002-6860-6864","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University , 1023 Shatai South Road, Baiyun District, Guangzhou 510515 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University , No. 2, Lujing Road, Yuexiu District, Guangzhou 510091 ,","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Dermatology Hospital, Southern Medical University, No. 2, Lujing Road, Yuexiu District, Guangzhou 510091, China","institution_ids":["https://openalex.org/I58200834"]},{"raw_affiliation_string":"Department of Bioinformatics, School of Basic Medical Sciences, Guangdong Province Key Laboratory of Molecular Tumor Pathology, Southern Medical University, 1023 Shatai South Road, Baiyun District, Guangzhou 510515, China","institution_ids":["https://openalex.org/I58200834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":18.236,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.99480612,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5213252902030945},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4928748607635498},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4475131034851074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4339447021484375},{"id":"https://openalex.org/keywords/multimodal-therapy","display_name":"Multimodal therapy","score":0.42560243606567383},{"id":"https://openalex.org/keywords/histology","display_name":"Histology","score":0.4243292808532715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35565119981765747},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30207693576812744},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15607699751853943},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12468788027763367},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12407663464546204}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5213252902030945},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4928748607635498},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4475131034851074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4339447021484375},{"id":"https://openalex.org/C4441509","wikidata":"https://www.wikidata.org/wiki/Q6418787","display_name":"Multimodal therapy","level":2,"score":0.42560243606567383},{"id":"https://openalex.org/C57742111","wikidata":"https://www.wikidata.org/wiki/Q7168","display_name":"Histology","level":2,"score":0.4243292808532715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35565119981765747},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30207693576812744},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15607699751853943},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12468788027763367},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12407663464546204}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf121","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf121/62519504/bbaf121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40116660","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40116660","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11926983","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11926983","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf121","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf121/62519504/bbaf121.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4424223039","display_name":null,"funder_award_id":"2024A1515011769","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G5973695744","display_name":null,"funder_award_id":"82370106","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408745389.pdf","grobid_xml":"https://content.openalex.org/works/W4408745389.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1966455406","https://openalex.org/W1987012261","https://openalex.org/W2020628257","https://openalex.org/W2334527906","https://openalex.org/W2573152477","https://openalex.org/W2791015340","https://openalex.org/W2796448036","https://openalex.org/W2944548074","https://openalex.org/W2951209146","https://openalex.org/W2964962196","https://openalex.org/W2974825848","https://openalex.org/W2996092187","https://openalex.org/W3003192283","https://openalex.org/W3007100994","https://openalex.org/W3043535018","https://openalex.org/W3046305306","https://openalex.org/W3137675974","https://openalex.org/W3165439041","https://openalex.org/W3176465542","https://openalex.org/W3178324441","https://openalex.org/W3204312334","https://openalex.org/W4206042814","https://openalex.org/W4206402984","https://openalex.org/W4213164367","https://openalex.org/W4229049871","https://openalex.org/W4288809219","https://openalex.org/W4289712293","https://openalex.org/W4291021272","https://openalex.org/W4296120150","https://openalex.org/W4304084212","https://openalex.org/W4306767432","https://openalex.org/W4311031872","https://openalex.org/W4315928876","https://openalex.org/W4319025410","https://openalex.org/W4365446445","https://openalex.org/W4378838672","https://openalex.org/W4380269519","https://openalex.org/W4384615843","https://openalex.org/W4385948838","https://openalex.org/W4392387789","https://openalex.org/W4393935425","https://openalex.org/W4398201291","https://openalex.org/W4400038286","https://openalex.org/W4400602122","https://openalex.org/W4401455022","https://openalex.org/W6682081665","https://openalex.org/W6865906831","https://openalex.org/W6870228314","https://openalex.org/W6872951305"],"related_works":["https://openalex.org/W2399181824","https://openalex.org/W4375867731","https://openalex.org/W1497328854","https://openalex.org/W4407908359","https://openalex.org/W2611989081","https://openalex.org/W4292630483","https://openalex.org/W4292002379","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W2312694297"],"abstract_inverted_index":{"Accurate":[0],"cancer":[1,58,118,202],"prognosis":[2],"is":[3,132,178],"essential":[4],"for":[5,56,68,181],"personalized":[6,182],"clinical":[7],"management,":[8],"guiding":[9],"treatment":[10,186],"strategies":[11],"and":[12,31,71,91,129,138,152,160],"predicting":[13],"patient":[14,99],"survival.":[15],"Conventional":[16],"methods,":[17],"which":[18,122],"depend":[19],"on":[20],"the":[21,111,136,164,198],"subjective":[22],"evaluation":[23],"of":[24,140,201],"histopathological":[25,92],"features,":[26],"exhibit":[27],"significant":[28],"inter-observer":[29],"variability":[30],"limited":[32],"predictive":[33,148],"power.":[34],"To":[35],"overcome":[36],"these":[37],"limitations,":[38],"we":[39],"developed":[40],"cross-attention":[41,73],"transformer-based":[42],"multimodal":[43,53,126],"fusion":[44],"network":[45],"(CATfusion),":[46],"a":[47,124,179,208],"deep":[48],"learning":[49,64,137],"framework":[50],"that":[51],"integrates":[52],"histology-genomic":[54],"data":[55,78,114],"comprehensive":[57],"survival":[59,106,161],"prediction.":[60],"By":[61,94],"employing":[62],"self-supervised":[63],"strategy":[65],"with":[66],"TabAE":[67],"feature":[69],"extraction":[70],"utilizing":[72],"mechanisms":[74],"to":[75,109],"fuse":[76],"diverse":[77,113],"types,":[79],"including":[80],"mRNA-seq,":[81],"miRNA-seq,":[82],"copy":[83],"number":[84],"variation,":[85,88],"DNA":[86],"methylation":[87],"mutation":[89],"data,":[90],"images.":[93],"successfully":[95],"integrating":[96],"this":[97],"multi-tiered":[98],"information,":[100],"CATfusion":[101,145],"has":[102],"become":[103],"an":[104],"advanced":[105],"prediction":[107],"model":[108],"utilize":[110],"most":[112],"types":[115],"across":[116],"various":[117,143],"types.":[119],"CATfusion's":[120,189],"architecture,":[121],"includes":[123],"bidirectional":[125],"attention":[127],"mechanism":[128],"self-attention":[130],"block,":[131],"adept":[133],"at":[134],"synchronizing":[135],"integration":[139],"representations":[141],"from":[142],"modalities.":[144],"achieves":[146],"superior":[147],"performance":[149],"over":[150],"traditional":[151],"unimodal":[153],"models,":[154],"as":[155,207],"demonstrated":[156],"by":[157,192],"enhanced":[158],"C-index":[159],"area":[162],"under":[163],"curve":[165],"scores.":[166],"The":[167],"model's":[168],"high":[169],"accuracy":[170],"in":[171,211],"stratifying":[172],"patients":[173],"into":[174,197],"distinct":[175],"risk":[176],"groups":[177],"boon":[180],"medicine,":[183],"enabling":[184],"tailored":[185],"plans.":[187],"Moreover,":[188],"interpretability,":[190],"enabled":[191],"attention-based":[193],"visualization,":[194],"offers":[195],"insights":[196],"biological":[199],"underpinnings":[200],"prognosis,":[203],"underscoring":[204],"its":[205],"potential":[206],"transformative":[209],"tool":[210],"oncology.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":6}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
