{"id":"https://openalex.org/W4408667162","doi":"https://doi.org/10.1093/bib/bbaf117","title":"GiGs: graph-based integrated Gaussian kernel similarity for virus\u2013drug association prediction","display_name":"GiGs: graph-based integrated Gaussian kernel similarity for virus\u2013drug association prediction","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408667162","doi":"https://doi.org/10.1093/bib/bbaf117","pmid":"https://pubmed.ncbi.nlm.nih.gov/40112339"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf117","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf117/62491990/bbaf117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf117/62491990/bbaf117.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101324092","display_name":"Yixuan Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixuan Jin","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101486984","display_name":"Juanjuan Huang","orcid":"https://orcid.org/0000-0003-0385-3263"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juanjuan Huang","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012,","State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Basic Medicine, Jilin University , No. 126 Xinmin Street, Changchun 130021,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Basic Medicine, Jilin University , No. 126 Xinmin Street, Changchun 130021,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100506871","display_name":"Xu Sun","orcid":"https://orcid.org/0009-0006-9153-6880"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Sun","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045633850","display_name":"Yabo Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yabo Fang","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111355773","display_name":"Jiageng Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiageng Wu","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084071369","display_name":"Jianshi Du","orcid":null},"institutions":[{"id":"https://openalex.org/I1318643470","display_name":"Union Hospital","ror":"https://ror.org/01j7r2734","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I1318643470"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianshi Du","raw_affiliation_strings":["China-Japan Union Hospital of Jilin University , Key Laboratory and Engineering Laboratory of Lymphatic Surgery Jilin Province, No. 126 Sendai Street, Changchun 130033 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China-Japan Union Hospital of Jilin University , Key Laboratory and Engineering Laboratory of Lymphatic Surgery Jilin Province, No. 126 Sendai Street, Changchun 130033 ,","institution_ids":["https://openalex.org/I1318643470","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060185581","display_name":"Jiwei Jia","orcid":"https://orcid.org/0000-0001-9055-7627"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiwei Jia","raw_affiliation_strings":["Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","Jilin National Applied Mathematical Center, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Mathematics, School of Mathematics, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Jilin National Applied Mathematical Center, Jilin University , No. 2699 Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":null,"display_name":"Guoqing Wang","orcid":"https://orcid.org/0000-0001-9326-3755"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoqing Wang","raw_affiliation_strings":["State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Basic Medicine, Jilin University , No. 126 Xinmin Street, Changchun 130021 ,"],"raw_orcid":"https://orcid.org/0000-0001-9326-3755","affiliations":[{"raw_affiliation_string":"State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Basic Medicine, Jilin University , No. 126 Xinmin Street, Changchun 130021 ,","institution_ids":["https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.3441,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88521838,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9610000252723694,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5680772066116333},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.5371596813201904},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.500558614730835},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49510374665260315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47812405228614807},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4427950978279114},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3726358711719513},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3287220001220703},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27934810519218445},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1650506854057312},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07405880093574524}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5680772066116333},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.5371596813201904},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.500558614730835},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49510374665260315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47812405228614807},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4427950978279114},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3726358711719513},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3287220001220703},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27934810519218445},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1650506854057312},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07405880093574524},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016011","descriptor_name":"Normal Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf117","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf117/62491990/bbaf117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40112339","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40112339","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11924387","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11924387","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf117","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf117/62491990/bbaf117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G4527287718","display_name":null,"funder_award_id":"20210101481JC","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"},{"id":"https://openalex.org/G5022040672","display_name":null,"funder_award_id":"2022YFF1203204","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5806181325","display_name":null,"funder_award_id":"U23A20269","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6102733610","display_name":null,"funder_award_id":"22341302","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310121","display_name":"Natural Science Foundation of Jilin Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322174","display_name":"People's Government of Jilin Province","ror":"https://ror.org/02fzqav45"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408667162.pdf","grobid_xml":"https://content.openalex.org/works/W4408667162.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W324102958","https://openalex.org/W1976400886","https://openalex.org/W1997232062","https://openalex.org/W2027866365","https://openalex.org/W2087007556","https://openalex.org/W2127774996","https://openalex.org/W2152630148","https://openalex.org/W2171353131","https://openalex.org/W2809363952","https://openalex.org/W2903136030","https://openalex.org/W2945027804","https://openalex.org/W2980655992","https://openalex.org/W3021970168","https://openalex.org/W3037489518","https://openalex.org/W3046615517","https://openalex.org/W3087156149","https://openalex.org/W3105441017","https://openalex.org/W3107779681","https://openalex.org/W3108752854","https://openalex.org/W3122083218","https://openalex.org/W3125008742","https://openalex.org/W3176638751","https://openalex.org/W3178949169","https://openalex.org/W3202924793","https://openalex.org/W4205478771","https://openalex.org/W4226049216","https://openalex.org/W4230401516","https://openalex.org/W4230700885","https://openalex.org/W4281617515","https://openalex.org/W4282921483","https://openalex.org/W4302577104","https://openalex.org/W4317951595","https://openalex.org/W4372337801","https://openalex.org/W4386068068","https://openalex.org/W4389753265","https://openalex.org/W4390331481","https://openalex.org/W4390666516","https://openalex.org/W4400932431","https://openalex.org/W4403218259","https://openalex.org/W6839405933"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2377121353","https://openalex.org/W2350529538","https://openalex.org/W2076713575","https://openalex.org/W2014996787"],"abstract_inverted_index":{"The":[0,39,96],"prediction":[1,140],"of":[2,15,47,66,85,106],"virus-drug":[3],"associations":[4],"(VDAs)":[5],"is":[6],"crucial":[7],"for":[8,32,148],"drug":[9,37,56,60],"repositioning,":[10],"contributing":[11],"to":[12,92],"the":[13,73,104,132,160],"identification":[14],"latent":[16],"antiviral":[17,94],"drugs.":[18,95],"In":[19],"this":[20],"study,":[21],"we":[22],"developed":[23],"a":[24],"graph-based":[25],"integrated":[26],"Gaussian":[27,77],"kernel":[28,80],"similarity":[29,70,113],"(GiGs)":[30],"method":[31],"predicting":[33],"potential":[34],"VDAs":[35],"in":[36],"repositioning.":[38],"GiGs":[40,97,133],"model":[41,98,134],"comprises":[42],"three":[43],"components:":[44],"(i)":[45],"collection":[46],"experimentally":[48],"validated":[49],"VDA":[50],"information":[51,75],"and":[52,59,68,76,82,115,118],"calculation":[53],"virus":[54],"sequence,":[55],"chemical":[57],"structure,":[58],"side":[61],"effect":[62],"similarity;":[63],"(ii)":[64],"integration":[65,105],"viruses":[67],"drugs":[69,147],"based":[71],"on":[72],"above":[74],"interaction":[78],"profile":[79],"(GIPK);":[81],"(iii)":[83],"utilization":[84],"similarity-constrained":[86],"weight":[87],"graph":[88,125],"normalization":[89],"matrix":[90,101],"factorization":[91],"predict":[93],"enhances":[99],"correlation":[100],"quality":[102],"through":[103,124],"multiple":[107],"biological":[108],"data,":[109],"improves":[110],"performance":[111],"via":[112],"constraints,":[114],"prevents":[116],"overfitting":[117],"predicts":[119],"missing":[120],"data":[121],"more":[122],"accurately":[123],"regularization.":[126],"Extensive":[127],"experimental":[128],"results":[129],"indicated":[130],"that":[131],"outperforms":[135],"five":[136],"other":[137],"advanced":[138],"association":[139],"methods.":[141],"A":[142],"case":[143],"study":[144],"identified":[145],"broad-spectrum":[146],"treating":[149],"highly":[150],"pathogenic":[151],"human":[152],"coronavirus":[153],"infections,":[154],"with":[155],"molecular":[156],"docking":[157],"experiments":[158],"confirming":[159],"model's":[161],"accuracy.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-21T08:15:58.654021","created_date":"2025-10-10T00:00:00"}
