{"id":"https://openalex.org/W4408745432","doi":"https://doi.org/10.1093/bib/bbaf116","title":"Benchmarking ensemble machine learning algorithms for multi-class, multi-omics data integration in clinical outcome prediction","display_name":"Benchmarking ensemble machine learning algorithms for multi-class, multi-omics data integration in clinical outcome prediction","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408745432","doi":"https://doi.org/10.1093/bib/bbaf116","pmid":"https://pubmed.ncbi.nlm.nih.gov/40116658"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf116","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf116/62519410/bbaf116.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf116/62519410/bbaf116.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023792790","display_name":"Annette Spooner","orcid":"https://orcid.org/0000-0002-5705-0602"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Annette Spooner","raw_affiliation_strings":["School of Computer Science and Engineering, University of New South Wales , High St, Kensington, NSW 2052 ,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, University of New South Wales , High St, Kensington, NSW 2052 ,","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005208666","display_name":"Mohammad Karimi Moridani","orcid":"https://orcid.org/0000-0003-0793-3797"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mohammad Karimi Moridani","raw_affiliation_strings":["School of Biotechnology and Biomolecular Sciences, University of New South Wales , NSW 2052 ,"],"affiliations":[{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, University of New South Wales , NSW 2052 ,","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000791374","display_name":"B. Toplis","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293026","display_name":"Sutherland Hospital","ror":"https://ror.org/01xcx0382","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799293026"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Barbra Toplis","raw_affiliation_strings":["St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,"],"affiliations":[{"raw_affiliation_string":"St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I2799293026","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052360422","display_name":"Jason Behary","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293026","display_name":"Sutherland Hospital","ror":"https://ror.org/01xcx0382","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799293026"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123059","display_name":"St George Hospital","ror":"https://ror.org/02pk13h45","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123059"]},{"id":"https://openalex.org/I4210152189","display_name":"St. George Hospital","ror":"https://ror.org/05ghtc147","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I4210152189"]}],"countries":["AU","IN"],"is_corresponding":false,"raw_author_name":"Jason Behary","raw_affiliation_strings":["Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I4210152189","https://openalex.org/I4210123059"]},{"raw_affiliation_string":"St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I2799293026","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001525349","display_name":"Azadeh Safarchi","orcid":"https://orcid.org/0000-0002-9112-939X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210142128","display_name":"CSIRO Health and Biosecurity","ror":"https://ror.org/03jh4jw93","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210142128","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Azadeh Safarchi","raw_affiliation_strings":["Health and Biosecurity, Microbiome for One System Health, Commonwealth Scientific and Industrial Research Organisation , 160 Hawkesbury Rd, Westmead, NSW 2145 ,"],"affiliations":[{"raw_affiliation_string":"Health and Biosecurity, Microbiome for One System Health, Commonwealth Scientific and Industrial Research Organisation , 160 Hawkesbury Rd, Westmead, NSW 2145 ,","institution_ids":["https://openalex.org/I4210142128","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004735573","display_name":"Salim Maher","orcid":"https://orcid.org/0000-0002-2579-5925"},"institutions":[{"id":"https://openalex.org/I2799293026","display_name":"Sutherland Hospital","ror":"https://ror.org/01xcx0382","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799293026"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123059","display_name":"St George Hospital","ror":"https://ror.org/02pk13h45","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123059"]},{"id":"https://openalex.org/I4210152189","display_name":"St. George Hospital","ror":"https://ror.org/05ghtc147","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I4210152189"]}],"countries":["AU","IN"],"is_corresponding":false,"raw_author_name":"Salim Maher","raw_affiliation_strings":["Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I4210152189","https://openalex.org/I4210123059"]},{"raw_affiliation_string":"St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I2799293026","https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090363651","display_name":"Fatemeh Vafaee","orcid":"https://orcid.org/0000-0002-7521-2417"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fatemeh Vafaee","raw_affiliation_strings":["School of Biotechnology and Biomolecular Sciences, University of New South Wales , NSW 2052 ,","UNSW Data Science Hub, University of New South Wales , High St, Kensington, NSW 2052 ,"],"affiliations":[{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, University of New South Wales , NSW 2052 ,","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"UNSW Data Science Hub, University of New South Wales , High St, Kensington, NSW 2052 ,","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045169514","display_name":"Amany Zekry","orcid":"https://orcid.org/0000-0002-5675-1810"},"institutions":[{"id":"https://openalex.org/I2799293026","display_name":"Sutherland Hospital","ror":"https://ror.org/01xcx0382","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799293026"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210123059","display_name":"St George Hospital","ror":"https://ror.org/02pk13h45","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210123059"]},{"id":"https://openalex.org/I4210152189","display_name":"St. George Hospital","ror":"https://ror.org/05ghtc147","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I4210152189"]}],"countries":["AU","IN"],"is_corresponding":false,"raw_author_name":"Amany Zekry","raw_affiliation_strings":["Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology and Hepatology, St George Hospital , Gray St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I4210152189","https://openalex.org/I4210123059"]},{"raw_affiliation_string":"St George and Sutherland Clinical Campuses, University of New South Wales , Short St, Kogarah, NSW 2217 ,","institution_ids":["https://openalex.org/I2799293026","https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055952724","display_name":"Arcot Sowmya","orcid":"https://orcid.org/0000-0001-9236-5063"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Arcot Sowmya","raw_affiliation_strings":["School of Computer Science and Engineering, University of New South Wales , High St, Kensington, NSW 2052 ,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, University of New South Wales , High St, Kensington, NSW 2052 ,","institution_ids":["https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5023792790"],"corresponding_institution_ids":["https://openalex.org/I31746571"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":10.4979,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.98613615,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7592577934265137},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7432286143302917},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.6438442468643188},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6149216294288635},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.6039580702781677},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5866236686706543},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.5698640942573547},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.5062150359153748},{"id":"https://openalex.org/keywords/adaboost","display_name":"AdaBoost","score":0.5012919902801514},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40611928701400757},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3201940655708313},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.207232266664505},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08729967474937439}],"concepts":[{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7592577934265137},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7432286143302917},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.6438442468643188},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6149216294288635},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.6039580702781677},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5866236686706543},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.5698640942573547},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.5062150359153748},{"id":"https://openalex.org/C141404830","wikidata":"https://www.wikidata.org/wiki/Q2823869","display_name":"AdaBoost","level":3,"score":0.5012919902801514},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40611928701400757},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3201940655708313},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.207232266664505},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08729967474937439},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006528","descriptor_name":"Carcinoma, Hepatocellular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf116","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf116/62519410/bbaf116.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40116658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40116658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11926982","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11926982","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf116","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf116/62519410/bbaf116.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408745432.pdf","grobid_xml":"https://content.openalex.org/works/W4408745432.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1580036490","https://openalex.org/W1700449338","https://openalex.org/W1968969471","https://openalex.org/W1988790447","https://openalex.org/W2068238590","https://openalex.org/W2120199131","https://openalex.org/W2145949183","https://openalex.org/W2146194630","https://openalex.org/W2148143831","https://openalex.org/W2156647247","https://openalex.org/W2250935806","https://openalex.org/W2330219538","https://openalex.org/W2582743722","https://openalex.org/W2590019597","https://openalex.org/W2898692146","https://openalex.org/W2903406988","https://openalex.org/W2955502047","https://openalex.org/W2963827865","https://openalex.org/W3046858608","https://openalex.org/W3104755560","https://openalex.org/W3112212292","https://openalex.org/W3120427380","https://openalex.org/W3137962378","https://openalex.org/W3154788907","https://openalex.org/W3173875945","https://openalex.org/W3174085703","https://openalex.org/W3201518044","https://openalex.org/W3216448540","https://openalex.org/W4213237113","https://openalex.org/W4224264808","https://openalex.org/W4246312812","https://openalex.org/W4289236186","https://openalex.org/W4295903888","https://openalex.org/W4296301762","https://openalex.org/W4304165944","https://openalex.org/W4308885870","https://openalex.org/W4308902683","https://openalex.org/W4310170873","https://openalex.org/W4311693052","https://openalex.org/W4321611584","https://openalex.org/W4383340501","https://openalex.org/W4392853342","https://openalex.org/W4399584394","https://openalex.org/W4400074174","https://openalex.org/W6691572049","https://openalex.org/W6728933153","https://openalex.org/W6855554506","https://openalex.org/W6889636728"],"related_works":["https://openalex.org/W2327035729","https://openalex.org/W2348748958","https://openalex.org/W3039673966","https://openalex.org/W1538046993","https://openalex.org/W1570592793","https://openalex.org/W1525436954","https://openalex.org/W2385662756","https://openalex.org/W2585372724","https://openalex.org/W2241444561","https://openalex.org/W1502951582"],"abstract_inverted_index":{"The":[0,71],"complementary":[1,211],"information":[2],"found":[3],"in":[4,12,223],"different":[5,69],"modalities":[6,109,215,236],"of":[7,16,25,30,36,50,53,62,65,121,124,170,196,202,246],"patient":[8],"data":[9,39,67,138,214],"can":[10],"aid":[11],"more":[13,230],"accurate":[14],"modelling":[15],"a":[17,22,31,51,80,89,94,118,122],"patient's":[18],"disease":[19],"state":[20],"and":[21,74,85,92,103,117,154,174,181,199,213,228],"better":[23],"understanding":[24],"the":[26,34,48,108,114,166,187,194,200,203,244],"underlying":[27],"biological":[28],"processes":[29],"disease.":[32,157],"However,":[33],"analysis":[35],"multi-modal,":[37],"multi-omics":[38],"presents":[40],"many":[41],"challenges.":[42],"In":[43],"this":[44],"work,":[45],"we":[46],"compare":[47],"performance":[49],"variety":[52],"ensemble":[54,72,218],"machine":[55],"learning":[56],"(ML)":[57],"algorithms":[58],"that":[59,161,176,209],"are":[60],"capable":[61],"late":[63],"integration":[64,245],"multi-class":[66,224,248],"from":[68,139,151],"modalities.":[70],"methods":[73,136],"their":[75],"variations":[76],"tested":[77],"were":[78,128,186],"(i)":[79],"voting":[81],"ensemble,":[82],"with":[83,183,216],"hard":[84,99],"soft":[86,101,184],"vote,":[87,100,102],"(ii)":[88],"meta":[90,104],"learner,":[91],"(iii)":[93],"multi-modal":[95,247],"AdaBoost":[96,182],"model":[97,116],"using":[98,137],"learner":[105],"to":[106,130,172],"integrate":[107],"on":[110,143,149],"each":[111],"boosting":[112],"round,":[113],"PB-MVBoost":[115,180],"novel":[119],"application":[120],"mixture":[123],"expert's":[125],"model.":[126],"These":[127],"compared":[129],"simple":[131,238],"concatenation.":[132,239],"We":[133,158,191,240],"examine":[134,193],"these":[135],"an":[140,163],"in-house":[141],"study":[142],"hepatocellular":[144],"carcinoma,":[145],"plus":[146],"validation":[147],"datasets":[148],"studies":[150],"breast":[152],"cancer":[153],"irritable":[155],"bowel":[156],"develop":[159],"models":[160,220],"achieve":[162],"area":[164],"under":[165],"receiver":[167],"operating":[168],"curve":[169],"up":[171],"0.85":[173],"find":[175],"two":[177],"boosted":[178],"methods,":[179],"vote":[185],"best":[188],"performing":[189],"models.":[190],"also":[192],"stability":[195],"features":[197,233],"selected":[198],"size":[201],"clinical":[204,225],"signature.":[205],"Our":[206],"work":[207],"shows":[208],"integrating":[210],"omics":[212],"effective":[217],"ML":[219],"enhances":[221],"accuracy":[222],"outcome":[226],"predictions":[227],"produces":[229],"stable":[231],"predictive":[232],"than":[234],"individual":[235],"or":[237],"provide":[241],"recommendations":[242],"for":[243],"data.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":9}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
