{"id":"https://openalex.org/W4408129837","doi":"https://doi.org/10.1093/bib/bbaf079","title":"HSSPPI: hierarchical and spatial-sequential modeling for PPIs prediction","display_name":"HSSPPI: hierarchical and spatial-sequential modeling for PPIs prediction","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408129837","doi":"https://doi.org/10.1093/bib/bbaf079","pmid":"https://pubmed.ncbi.nlm.nih.gov/40037640"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf079","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf079/62262605/bbaf079.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf079/62262605/bbaf079.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039487617","display_name":"Yuguang Li","orcid":"https://orcid.org/0000-0002-8927-3536"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuguang Li","raw_affiliation_strings":["Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037131488","display_name":"Zhen Tian","orcid":"https://orcid.org/0000-0003-0945-8168"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Tian","raw_affiliation_strings":["University of Electronic Science and Technology of China Yangtze Delta Region Institute (Quzhou), , Quzhou 324003, Zhejiang,","Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324003, Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Electronic Science and Technology of China Yangtze Delta Region Institute (Quzhou), , Quzhou 324003, Zhejiang,","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]},{"raw_affiliation_string":"Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou 324003, Zhejiang, China","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038837906","display_name":"Xiaofei Nan","orcid":"https://orcid.org/0000-0001-9145-1111"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofei Nan","raw_affiliation_strings":["Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101478099","display_name":"Shoutao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shoutao Zhang","raw_affiliation_strings":["Zhengzhou University School of Life Sciences, , Zhengzhou 450001, Henan,","Zhongyuan Intelligent Medical Laboratory , Zhengzhou 450001, Henan,","School of Life Sciences, Zhengzhou University, Zhengzhou 450001, Henan, China","Zhongyuan Intelligent Medical Laboratory, Zhengzhou 450001, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhengzhou University School of Life Sciences, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"Zhongyuan Intelligent Medical Laboratory , Zhengzhou 450001, Henan,","institution_ids":[]},{"raw_affiliation_string":"School of Life Sciences, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"Zhongyuan Intelligent Medical Laboratory, Zhengzhou 450001, Henan, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091337485","display_name":"Qinglei Zhou","orcid":"https://orcid.org/0000-0002-1156-1108"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinglei Zhou","raw_affiliation_strings":["Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015725187","display_name":"Shuai Lu","orcid":"https://orcid.org/0000-0001-9489-0611"},"institutions":[{"id":"https://openalex.org/I38877650","display_name":"Zhengzhou University","ror":"https://ror.org/04ypx8c21","country_code":"CN","type":"education","lineage":["https://openalex.org/I38877650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Lu","raw_affiliation_strings":["Zhengzhou University National Supercomputing Center in Zhengzhou, , Zhengzhou 450001, Henan,","Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, Henan, China","School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhengzhou University National Supercomputing Center in Zhengzhou, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"Zhengzhou University School of Computer and Artificial Intelligence, , Zhengzhou 450001, Henan,","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]},{"raw_affiliation_string":"School of Computer and Artificial Intelligence, Zhengzhou University, Zhengzhou 450001, Henan, China","institution_ids":["https://openalex.org/I38877650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.1299,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7535981,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"26","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.629800021648407,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.629800021648407,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.24709999561309814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0471000000834465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6738578677177429},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3778076469898224},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3633137345314026}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6738578677177429},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3778076469898224},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3633137345314026}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf079","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf079/62262605/bbaf079.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40037640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40037640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11879409","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11879409","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf079","pdf_url":"https://academic.oup.com/bib/article-pdf/26/2/bbaf079/62262605/bbaf079.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G319845400","display_name":null,"funder_award_id":"62371423 and 61572444","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6603390841","display_name":null,"funder_award_id":"232300421117","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4408129837.pdf"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W2018661561","https://openalex.org/W2076710572","https://openalex.org/W2141627824","https://openalex.org/W2155194485","https://openalex.org/W2192578595","https://openalex.org/W2264362083","https://openalex.org/W2283929195","https://openalex.org/W2570083522","https://openalex.org/W2944679105","https://openalex.org/W2955690154","https://openalex.org/W2962810718","https://openalex.org/W2971405760","https://openalex.org/W2990138404","https://openalex.org/W2992752586","https://openalex.org/W3009202743","https://openalex.org/W3045078359","https://openalex.org/W3080498684","https://openalex.org/W3094497296","https://openalex.org/W3156650687","https://openalex.org/W3172441129","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3197696221","https://openalex.org/W3202105508","https://openalex.org/W4206247924","https://openalex.org/W4210318145","https://openalex.org/W4213382600","https://openalex.org/W4226331246","https://openalex.org/W4281569605","https://openalex.org/W4284680380","https://openalex.org/W4290673792","https://openalex.org/W4296293027","https://openalex.org/W4296311649","https://openalex.org/W4309362167","https://openalex.org/W4309438076","https://openalex.org/W4309506674","https://openalex.org/W4317369987","https://openalex.org/W4318067710","https://openalex.org/W4321227311","https://openalex.org/W4321851522","https://openalex.org/W4323312158","https://openalex.org/W4323348775","https://openalex.org/W4362522229","https://openalex.org/W4366279959","https://openalex.org/W4382198799","https://openalex.org/W4383645566","https://openalex.org/W4384819481","https://openalex.org/W4385064136","https://openalex.org/W4386634093","https://openalex.org/W4388454562","https://openalex.org/W4388485703","https://openalex.org/W4388663283","https://openalex.org/W4389076414","https://openalex.org/W4390277796","https://openalex.org/W4390501271","https://openalex.org/W4390702381","https://openalex.org/W4392191288","https://openalex.org/W4392544734","https://openalex.org/W4392633820","https://openalex.org/W4404210051","https://openalex.org/W4406262333","https://openalex.org/W6720006811","https://openalex.org/W6726873649","https://openalex.org/W6738964360","https://openalex.org/W6797464607"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein-protein":[1],"interactions":[2],"play":[3],"a":[4,18,33,78,100,105,111,116,129,173],"fundamental":[5],"role":[6],"in":[7,103,107,118],"biological":[8,28],"systems.":[9],"Accurate":[10],"detection":[11],"of":[12,23,35,54,88,142,163,190],"protein-protein":[13],"interaction":[14,135],"sites":[15],"(PPIs)":[16],"remains":[17],"challenge.":[19],"And,":[20,64],"the":[21,65,108,119,152,156,161],"methods":[22,37,48],"PPIs":[24,91],"prediction":[25],"based":[26],"on":[27,51,147],"experiments":[29],"are":[30],"expensive.":[31],"Recently,":[32],"lot":[34],"computation-based":[36],"have":[38],"been":[39],"developed":[40],"and":[41,85,115,139,151,167,181],"made":[42],"great":[43],"progress.":[44],"However,":[45],"current":[46],"computational":[47],"only":[49,57],"focus":[50],"one":[52],"form":[53],"protein,":[55],"using":[56],"protein":[58,89,98,109,165],"spatial":[59,138,180],"conformation":[60],"or":[61],"primary":[62],"sequence.":[63],"protein's":[66],"natural":[67],"hierarchical":[68,84,101,164],"structure":[69],"is":[70,110,121,192],"ignored.":[71],"RESULTS:":[72],"In":[73,93],"this":[74,94],"study,":[75],"we":[76,96,127],"propose":[77],"novel":[79],"network":[80],"architecture,":[81],"HSSPPI,":[82],"through":[83],"spatial-sequential":[86,130],"modeling":[87,166],"for":[90,132],"prediction.":[92],"network,":[95],"represent":[97],"as":[99],"graph,":[102],"which":[104],"node":[106,117],"residue":[112,120],"(residue-level":[113],"graph)":[114],"an":[122],"atom":[123],"(atom-level":[124],"graph).":[125],"Moreover,":[126],"design":[128],"block":[131],"capturing":[133],"complex":[134],"relationships":[136],"from":[137],"sequential":[140,182],"forms":[141],"protein.":[143],"We":[144],"evaluate":[145],"HSSPPI":[146,171,191],"public":[148],"benchmark":[149],"datasets":[150],"predicting":[153],"results":[154],"outperform":[155],"comparative":[157],"models.":[158],"This":[159],"indicates":[160],"effectiveness":[162],"also":[168],"illustrates":[169],"that":[170],"has":[172],"strong":[174],"feature":[175],"extraction":[176],"ability":[177],"by":[178],"considering":[179],"information":[183],"simultaneously.":[184],"AVAILABILITY":[185],"AND":[186],"IMPLEMENTATION:":[187],"The":[188],"code":[189],"available":[193],"at":[194],"https://github.com/biolushuai/Hierarchical-Spatial-Sequential-Modeling-of-Protein.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
