{"id":"https://openalex.org/W4407867706","doi":"https://doi.org/10.1093/bib/bbaf066","title":"ESM-BBB-Pred: a fine-tuned ESM 2.0 and deep neural networks for the identification of blood\u2013brain barrier peptides","display_name":"ESM-BBB-Pred: a fine-tuned ESM 2.0 and deep neural networks for the identification of blood\u2013brain barrier peptides","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4407867706","doi":"https://doi.org/10.1093/bib/bbaf066","pmid":"https://pubmed.ncbi.nlm.nih.gov/39987496"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf066","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf066/62054921/bbaf066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf066/62054921/bbaf066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021723060","display_name":"Ansar Naseem","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100043","display_name":"Superior University","ror":"https://ror.org/00yh88643","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210100043"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Ansar Naseem","raw_affiliation_strings":["Department of Software Engineering, Superior University , 17 KM Raiwind Road Lahore, Punjab 55150 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Superior University , 17 KM Raiwind Road Lahore, Punjab 55150 ,","institution_ids":["https://openalex.org/I4210100043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088232762","display_name":"Fahad Alturise","orcid":"https://orcid.org/0000-0001-9176-7984"},"institutions":[{"id":"https://openalex.org/I156216236","display_name":"Qassim University","ror":"https://ror.org/01wsfe280","country_code":"SA","type":"education","lineage":["https://openalex.org/I156216236"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Fahad Alturise","raw_affiliation_strings":["Department of Cybersecurity, College of Computer, Qassim University , Buraydah ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cybersecurity, College of Computer, Qassim University , Buraydah ,","institution_ids":["https://openalex.org/I156216236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016603327","display_name":"Tamim Alkhalifah","orcid":"https://orcid.org/0000-0001-8407-2068"},"institutions":[{"id":"https://openalex.org/I156216236","display_name":"Qassim University","ror":"https://ror.org/01wsfe280","country_code":"SA","type":"education","lineage":["https://openalex.org/I156216236"]},{"id":"https://openalex.org/I4210092650","display_name":"Buraydah Colleges","ror":"https://ror.org/00j0krs40","country_code":"SA","type":"education","lineage":["https://openalex.org/I4210092650"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Tamim Alkhalifah","raw_affiliation_strings":["Department of Computer Engineering, College of Computer, Qassim University , Buraydah ,"],"raw_orcid":"https://orcid.org/0000-0001-8407-2068","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, College of Computer, Qassim University , Buraydah ,","institution_ids":["https://openalex.org/I156216236","https://openalex.org/I4210092650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075858344","display_name":"Yaser Daanial Khan","orcid":"https://orcid.org/0000-0002-2482-275X"},"institutions":[{"id":"https://openalex.org/I87482320","display_name":"University of Management and Technology","ror":"https://ror.org/0095xcq10","country_code":"PK","type":"education","lineage":["https://openalex.org/I87482320"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Yaser Daanial Khan","raw_affiliation_strings":["Department of Computer Science, School of Systems and Technology, University of Management and Technology , Lahore ,"],"raw_orcid":"https://orcid.org/0000-0002-2482-275X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Systems and Technology, University of Management and Technology , Lahore ,","institution_ids":["https://openalex.org/I87482320"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016603327"],"corresponding_institution_ids":["https://openalex.org/I156216236","https://openalex.org/I4210092650"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.9441,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7438164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7794181108474731},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7519782781600952},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6291449069976807},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5669511556625366},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5538069605827332},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5038761496543884},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4762706458568573},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4654695689678192},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44458290934562683},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.41507506370544434}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7794181108474731},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7519782781600952},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6291449069976807},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5669511556625366},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5538069605827332},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5038761496543884},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4762706458568573},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4654695689678192},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44458290934562683},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.41507506370544434},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001812","descriptor_name":"Blood-Brain Barrier","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001812","descriptor_name":"Blood-Brain Barrier","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001812","descriptor_name":"Blood-Brain Barrier","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001812","descriptor_name":"Blood-Brain Barrier","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001812","descriptor_name":"Blood-Brain Barrier","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf066","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf066/62054921/bbaf066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39987496","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39987496","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12079436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12079436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf066","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf066/62054921/bbaf066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G92618698","display_name":null,"funder_award_id":"(QU-APC 2025).","funder_id":"https://openalex.org/F4320324403","funder_display_name":"Qassim University"}],"funders":[{"id":"https://openalex.org/F4320324403","display_name":"Qassim University","ror":"https://ror.org/01wsfe280"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407867706.pdf","grobid_xml":"https://content.openalex.org/works/W4407867706.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1983472437","https://openalex.org/W1993640941","https://openalex.org/W2015541518","https://openalex.org/W2052087267","https://openalex.org/W2069050425","https://openalex.org/W2101099825","https://openalex.org/W2159821105","https://openalex.org/W2744385871","https://openalex.org/W2923709640","https://openalex.org/W2947912105","https://openalex.org/W2969438243","https://openalex.org/W2974377739","https://openalex.org/W2982150996","https://openalex.org/W2998167402","https://openalex.org/W3001586597","https://openalex.org/W3018838420","https://openalex.org/W3019617034","https://openalex.org/W3119003488","https://openalex.org/W3135794967","https://openalex.org/W3152539471","https://openalex.org/W3181450985","https://openalex.org/W3188948283","https://openalex.org/W3190208036","https://openalex.org/W3193542455","https://openalex.org/W3203395656","https://openalex.org/W3209675702","https://openalex.org/W3214112664","https://openalex.org/W4206110562","https://openalex.org/W4206336919","https://openalex.org/W4224130789","https://openalex.org/W4240121760","https://openalex.org/W4280654348","https://openalex.org/W4285807029","https://openalex.org/W4306362420","https://openalex.org/W4318476344","https://openalex.org/W4318561805","https://openalex.org/W4319056893","https://openalex.org/W4327550249","https://openalex.org/W4388798297","https://openalex.org/W4397039738"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W4225394202","https://openalex.org/W2130974462","https://openalex.org/W4226493464","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3008584592"],"abstract_inverted_index":{"Blood-brain":[0],"barrier":[1],"peptides":[2,65],"(BBBP)":[3],"could":[4],"significantly":[5],"improve":[6],"the":[7,12,15,35,42,59,103,142,145,208,219,223],"delivery":[8],"of":[9,46,144,226],"drugs":[10,49,55],"to":[11,57,87,140,203],"brain,":[13],"paving":[14],"way":[16],"for":[17,20,68,161,178],"new":[18],"treatments":[19],"central":[21],"nervous":[22],"system":[23,213],"(CNS)":[24],"disorders.":[25],"The":[26,90,192],"primary":[27],"challenge":[28],"in":[29,34,40,70,222],"treating":[30],"CNS":[31],"disorders":[32],"lies":[33],"difficulty":[36],"pharmaceutical":[37],"agent's":[38],"face":[39],"crossing":[41],"BBB.":[43],"Almost":[44],"98%":[45],"small":[47],"molecule":[48,54],"and":[50,95,131,172,188,206,218],"nearly":[51],"all":[52],"large":[53],"fail":[56],"penetrate":[58],"BBB":[60],"effectively.":[61],"Thus,":[62],"identifying":[63],"these":[64],"is":[66],"vital":[67],"advancements":[69],"healthcare.":[71],"This":[72,212],"study":[73],"introduces":[74],"an":[75],"enhanced":[76],"intelligent":[77],"computational":[78,224],"model":[79,151,194],"called":[80],"BBB-PEP-":[81],"Evolutionary":[82],"Scale":[83],"Modeling":[84],"(ESM),":[85],"designed":[86],"identify":[88],"BBBP.":[89,227],"relative":[91],"positions,":[92],"reverse":[93],"position":[94],"statistical":[96],"moment-based":[97],"features":[98],"have":[99,135,175],"been":[100,136,155,176],"utilized":[101,177],"on":[102,157],"existing":[104,209],"benchmark":[105,159,210],"dataset.":[106],"For":[107],"classification":[108],"purpose,":[109],"six":[110],"deep":[111],"classifiers":[112,205],"such":[113,166],"as":[114,167,201],"fully":[115],"connected":[116],"networks,":[117,124],"convolutional":[118],"neural":[119,123],"network,":[120],"simple":[121],"recurrent":[122,133],"long":[125],"short-term":[126],"memory":[127],"(LSTM),":[128],"bidirectional":[129],"LSTM,":[130],"gated":[132],"unit":[134],"utilized.":[137],"In":[138],"addition":[139],"harnessing":[141],"effectiveness":[143],"pre-trained":[146],"model,":[147],"a":[148,158],"protein":[149],"language":[150],"ESM":[152,195],"2.0":[153,196],"has":[154,197],"fine-tuned":[156,193],"dataset":[160],"BBBP":[162],"classification.":[163],"Three":[164],"tests":[165],"self-consistency,":[168],"independent":[169],"set":[170],"testing,":[171],"five-fold":[173],"cross-validation":[174],"evaluation":[179,182],"purposes":[180],"with":[181],"metrics":[183],"includes":[184],"accuracy,":[185],"specificity,":[186],"sensitivity,":[187],"Matthews":[189],"correlation":[190],"coefficient.":[191],"shown":[198],"superior":[199],"results":[200],"compared":[202],"employed":[204],"surpasses":[207],"studies.":[211],"will":[214],"support":[215],"future":[216],"research":[217],"scientific":[220],"community":[221],"identification":[225]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
