{"id":"https://openalex.org/W4407592977","doi":"https://doi.org/10.1093/bib/bbaf058","title":"mmGEBLUP: an advanced genomic prediction scheme for genetic improvement of complex traits in crops through integrative analysis of major genes, polygenes, and genotype\u2013environment interactions","display_name":"mmGEBLUP: an advanced genomic prediction scheme for genetic improvement of complex traits in crops through integrative analysis of major genes, polygenes, and genotype\u2013environment interactions","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4407592977","doi":"https://doi.org/10.1093/bib/bbaf058","pmid":"https://pubmed.ncbi.nlm.nih.gov/39950744"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf058","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf058/61896947/bbaf058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf058/61896947/bbaf058.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053562044","display_name":"Qi-Xin Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125520","display_name":"Yunnan Academy of Agricultural Sciences","ror":"https://ror.org/02z2d6373","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125520"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210156466","display_name":"Institute of Crop Science","ror":"https://ror.org/053g6zg46","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210156466"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","IN","JP"],"is_corresponding":false,"raw_author_name":"Qi-Xin Zhang","raw_affiliation_strings":["Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,","Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210156466","https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,","institution_ids":["https://openalex.org/I4210125520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081835076","display_name":"Tianneng Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210156466","display_name":"Institute of Crop Science","ror":"https://ror.org/053g6zg46","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210156466"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","IN","JP"],"is_corresponding":false,"raw_author_name":"Tianneng Zhu","raw_affiliation_strings":["Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210156466","https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021542641","display_name":"Lin Feng","orcid":"https://orcid.org/0000-0002-4370-0846"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210156466","display_name":"Institute of Crop Science","ror":"https://ror.org/053g6zg46","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210156466"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","IN","JP"],"is_corresponding":false,"raw_author_name":"Feng Lin","raw_affiliation_strings":["Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210156466","https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018430127","display_name":"Dunhuang Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125520","display_name":"Yunnan Academy of Agricultural Sciences","ror":"https://ror.org/02z2d6373","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125520"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dunhuang Fang","raw_affiliation_strings":["Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,","institution_ids":["https://openalex.org/I4210125520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101478358","display_name":"Xuejun Chen","orcid":"https://orcid.org/0000-0002-7650-5756"},"institutions":[{"id":"https://openalex.org/I4210125520","display_name":"Yunnan Academy of Agricultural Sciences","ror":"https://ror.org/02z2d6373","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125520"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuejun Chen","raw_affiliation_strings":["Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,","institution_ids":["https://openalex.org/I4210125520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102329969","display_name":"Xiang-Yang Lou","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiangyang Lou","raw_affiliation_strings":["Department of Biostatistics, University of Florida , Gainesville, FL 32611 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, University of Florida , Gainesville, FL 32611 ,","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012373054","display_name":"Zhijun Tong","orcid":"https://orcid.org/0000-0001-9892-0443"},"institutions":[{"id":"https://openalex.org/I4210125520","display_name":"Yunnan Academy of Agricultural Sciences","ror":"https://ror.org/02z2d6373","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125520"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhijun Tong","raw_affiliation_strings":["Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,","institution_ids":["https://openalex.org/I4210125520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103155517","display_name":"Bingguang Xiao","orcid":"https://orcid.org/0000-0003-4823-727X"},"institutions":[{"id":"https://openalex.org/I4210125520","display_name":"Yunnan Academy of Agricultural Sciences","ror":"https://ror.org/02z2d6373","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125520"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingguang Xiao","raw_affiliation_strings":["Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tobacco Biotechnological Breeding, National Tobacco Genetic Engineering Research Center, Yunnan Academy of Tobacco Agricultural Sciences , 33 Yuantong Road, Wuhua Distrct, Kunming, Yunnan 650021 ,","institution_ids":["https://openalex.org/I4210125520"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056079345","display_name":"Haiming Xu","orcid":"https://orcid.org/0000-0002-0675-4087"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210156466","display_name":"Institute of Crop Science","ror":"https://ror.org/053g6zg46","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I4210156466"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","IN","JP"],"is_corresponding":false,"raw_author_name":"Hai-Ming Xu","raw_affiliation_strings":["Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,"],"raw_orcid":"https://orcid.org/0000-0002-0675-4087","affiliations":[{"raw_affiliation_string":"Institute of Crop Science and Institute of Bioinformatics, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310058 ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210156466","https://openalex.org/I4210148697"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.9056,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.87543913,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polygene","display_name":"Polygene","score":0.8672467470169067},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.7509118318557739},{"id":"https://openalex.org/keywords/heritability","display_name":"Heritability","score":0.7014247179031372},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5704682469367981},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5221153497695923},{"id":"https://openalex.org/keywords/gene\u2013environment-interaction","display_name":"Gene\u2013environment interaction","score":0.5171808004379272},{"id":"https://openalex.org/keywords/genomic-selection","display_name":"Genomic selection","score":0.49845337867736816},{"id":"https://openalex.org/keywords/additive-genetic-effects","display_name":"Additive genetic effects","score":0.4903829097747803},{"id":"https://openalex.org/keywords/additive-model","display_name":"Additive model","score":0.48325854539871216},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.45738381147384644},{"id":"https://openalex.org/keywords/best-linear-unbiased-prediction","display_name":"Best linear unbiased prediction","score":0.4342670440673828},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41442131996154785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3978148102760315},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33322980999946594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2678603529930115},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.26253876090049744},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2346612513065338},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.1439940631389618}],"concepts":[{"id":"https://openalex.org/C84799019","wikidata":"https://www.wikidata.org/wiki/Q426365","display_name":"Polygene","level":4,"score":0.8672467470169067},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.7509118318557739},{"id":"https://openalex.org/C161890455","wikidata":"https://www.wikidata.org/wiki/Q1503548","display_name":"Heritability","level":2,"score":0.7014247179031372},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5704682469367981},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5221153497695923},{"id":"https://openalex.org/C130947863","wikidata":"https://www.wikidata.org/wiki/Q5533121","display_name":"Gene\u2013environment interaction","level":4,"score":0.5171808004379272},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.49845337867736816},{"id":"https://openalex.org/C104201883","wikidata":"https://www.wikidata.org/wiki/Q4681342","display_name":"Additive genetic effects","level":3,"score":0.4903829097747803},{"id":"https://openalex.org/C203223496","wikidata":"https://www.wikidata.org/wiki/Q4681344","display_name":"Additive model","level":2,"score":0.48325854539871216},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.45738381147384644},{"id":"https://openalex.org/C103545067","wikidata":"https://www.wikidata.org/wiki/Q796265","display_name":"Best linear unbiased prediction","level":3,"score":0.4342670440673828},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41442131996154785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3978148102760315},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33322980999946594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2678603529930115},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.26253876090049744},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2346612513065338},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.1439940631389618}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059647","descriptor_name":"Gene-Environment Interaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059647","descriptor_name":"Gene-Environment Interaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059647","descriptor_name":"Gene-Environment Interaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059647","descriptor_name":"Gene-Environment Interaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf058","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf058/61896947/bbaf058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39950744","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39950744","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11826347","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11826347","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf058","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf058/61896947/bbaf058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.75,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2070271254","display_name":null,"funder_award_id":"31871707","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3836111272","display_name":null,"funder_award_id":"31961143016","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5560478816","display_name":null,"funder_award_id":"2022C02032","funder_id":"https://openalex.org/F8142712028","funder_display_name":"Key Research and Development Program of Zhejiang Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F8142712028","display_name":"Key Research and Development Program of Zhejiang Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407592977.pdf","grobid_xml":"https://content.openalex.org/works/W4407592977.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W192766808","https://openalex.org/W1928998639","https://openalex.org/W1977950286","https://openalex.org/W1978369346","https://openalex.org/W2025865461","https://openalex.org/W2029579605","https://openalex.org/W2059503485","https://openalex.org/W2075417464","https://openalex.org/W2096808786","https://openalex.org/W2123523713","https://openalex.org/W2125066647","https://openalex.org/W2148306906","https://openalex.org/W2151391832","https://openalex.org/W2154522026","https://openalex.org/W2258788146","https://openalex.org/W2409433741","https://openalex.org/W2414852797","https://openalex.org/W2422205309","https://openalex.org/W2607207785","https://openalex.org/W2736745869","https://openalex.org/W2808987896","https://openalex.org/W2906430623","https://openalex.org/W2918389998","https://openalex.org/W2921751993","https://openalex.org/W2991624281","https://openalex.org/W3012909962","https://openalex.org/W3020100939","https://openalex.org/W3036465674","https://openalex.org/W3107232899","https://openalex.org/W4281990483","https://openalex.org/W4294904679","https://openalex.org/W4320917903","https://openalex.org/W4388616470","https://openalex.org/W4400314227","https://openalex.org/W4401338734","https://openalex.org/W6714323541"],"related_works":["https://openalex.org/W3042308140","https://openalex.org/W2246145449","https://openalex.org/W3022063148","https://openalex.org/W2361803969","https://openalex.org/W2921751993","https://openalex.org/W4391933109","https://openalex.org/W4296344154","https://openalex.org/W2157263348","https://openalex.org/W4390953265","https://openalex.org/W2565424144"],"abstract_inverted_index":{"Current":[0],"genomic":[1,224],"prediction":[2,138,233],"(GP)":[3],"models":[4,107],"often":[5],"fall":[6],"short":[7],"of":[8,14,47,115,149,153,162,214,239,247],"fully":[9,42],"capturing":[10],"the":[11,29,38,44,70,77,90,103,147,185,190,199,205,208,237,244],"genetic":[12,45,65,71,240,245],"architecture":[13,46],"complex":[15,48,248],"traits":[16,49,178,249],"and":[17,50,96,102,105,111,121,129,151,170,242],"providing":[18,144],"practical":[19,156],"breeding":[20,54],"guidance,":[21],"particularly":[22],"under":[23,252],"varying":[24],"environments.":[25,254],"Here,":[26],"we":[27,133,158,174],"propose":[28],"mmGEBLUP,":[30,143],"an":[31,231],"advanced":[32,232],"GP":[33],"scheme":[34,234],"designed":[35],"to":[36,51,68,123,142],"tackle":[37],"current":[39],"limitations":[40],"in":[41,127,131,137,183,207,250],"exploiting":[43],"predict":[52,159],"individual":[53],"value":[55],"(BV)":[56],"with":[57],"multi-environment":[58],"trial":[59],"data.":[60],"Our":[61],"approach":[62],"considers":[63,85],"four":[64,75,160],"structural":[66],"indicators":[67],"capture":[69],"architectures":[72,241],"stepwise":[73,135],"across":[74],"models:":[76],"Genomic":[78],"Best":[79],"Linear":[80],"Unbiased":[81],"Prediction":[82],"(GBLUP)":[83],"model":[84,92],"only":[86],"main":[87,95,110],"polygenic":[88,100],"effects;":[89,101],"GEBLUP":[91],"includes":[93],"both":[94],"genotype-by-environment":[97],"(GE)":[98],"interaction":[99,113],"mmGBLUP":[104],"mmGEBLUP":[106,229],"further":[108],"incorporate":[109],"GE":[112],"effects":[114],"major":[116,164,168,186],"genes.":[117],"Through":[118],"systematic":[119],"simulations":[120],"applications":[122],"nine":[124],"traits,":[125],"three":[126],"rice":[128],"six":[130],"tobacco,":[132,184],"show":[134],"increases":[136],"accuracy":[139],"from":[140],"GBLUP":[141],"evidence":[145],"on":[146],"scale":[148],"heritability":[150],"polygenicity":[152],"traits.":[154],"In":[155],"terms,":[157],"components":[161],"BV:":[163],"additive,":[165,167],"minor":[166,171,200],"interaction,":[169],"interaction.":[172],"Interestingly,":[173],"discover":[175],"that":[176,203,235],"for":[177,189],"like":[179],"natural":[180],"leaf":[181],"number":[182],"additive":[187,201,216],"BVs":[188,217],"top":[191],"20":[192],"individuals":[193],"are":[194],"substantially":[195],"equal;":[196],"it":[197],"is":[198,230],"BV":[202],"causes":[204],"difference":[206],"total":[209],"BV.":[210],"The":[211],"relative":[212],"size":[213],"major/minor":[215],"suggests":[218],"performing":[219],"either":[220],"marker-assisted":[221],"selection":[222,225],"or":[223,226],"both.":[227],"Overall,":[228],"enhances":[236],"understanding":[238],"facilitate":[243],"improvement":[246],"crops":[251],"diverse":[253]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
