{"id":"https://openalex.org/W4406688388","doi":"https://doi.org/10.1093/bib/bbaf019","title":"Therapeutic gene target prediction using novel deep hypergraph representation learning","display_name":"Therapeutic gene target prediction using novel deep hypergraph representation learning","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4406688388","doi":"https://doi.org/10.1093/bib/bbaf019","pmid":"https://pubmed.ncbi.nlm.nih.gov/39841592"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf019","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbaf019","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046270910","display_name":"Ki-Beom Kim","orcid":"https://orcid.org/0000-0002-7791-6450"},"institutions":[{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kibeom Kim","raw_affiliation_strings":["Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002384612","display_name":"Juseong Kim","orcid":"https://orcid.org/0000-0002-0576-5956"},"institutions":[{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Juseong Kim","raw_affiliation_strings":["Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110056473","display_name":"Min-Wook Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minwook Kim","raw_affiliation_strings":["Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013469626","display_name":"Hyewon Lee","orcid":"https://orcid.org/0000-0002-5843-7737"},"institutions":[{"id":"https://openalex.org/I4210115854","display_name":"Pusan National University Hospital","ror":"https://ror.org/027zf7h57","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I4210115854","https://openalex.org/I4921948"]},{"id":"https://openalex.org/I4210144322","display_name":"Medical Research Institute","ror":"https://ror.org/0582gcw47","country_code":"LK","type":"healthcare","lineage":["https://openalex.org/I4210144322"]},{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR","LK"],"is_corresponding":false,"raw_author_name":"Hyewon Lee","raw_affiliation_strings":["College of Medicine, Pusan National University , 20 Geumo-ro, Yangsan 50612, Gyeongsangnam-do ,","Department of Cardiology , Medical Research Institute, , 179 Gudeok-ro, Busan 49241 ,","Pusan National University Hospital , Medical Research Institute, , 179 Gudeok-ro, Busan 49241 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, Pusan National University , 20 Geumo-ro, Yangsan 50612, Gyeongsangnam-do ,","institution_ids":["https://openalex.org/I4921948"]},{"raw_affiliation_string":"Department of Cardiology , Medical Research Institute, , 179 Gudeok-ro, Busan 49241 ,","institution_ids":["https://openalex.org/I4210144322"]},{"raw_affiliation_string":"Pusan National University Hospital , Medical Research Institute, , 179 Gudeok-ro, Busan 49241 ,","institution_ids":["https://openalex.org/I4210115854"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012853928","display_name":"Giltae Song","orcid":"https://orcid.org/0000-0001-8796-4678"},"institutions":[{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Giltae Song","raw_affiliation_strings":["Center for Artificial Intelligence Research, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","Department of Electrical and Computer Engineering , School of Computer Science and Engineering, , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","Pusan National University , School of Computer Science and Engineering, , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,"],"raw_orcid":"https://orcid.org/0000-0001-8796-4678","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Research, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering , School of Computer Science and Engineering, , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":[]},{"raw_affiliation_string":"Division of Artificial Intelligence, Pusan National University , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]},{"raw_affiliation_string":"Pusan National University , School of Computer Science and Engineering, , 2 Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 46241 ,","institution_ids":["https://openalex.org/I4921948"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2875672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.8962306380271912},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6027251482009888},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5624619126319885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5466237664222717},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5266014337539673},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49543917179107666},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.472125381231308},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4696114659309387},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.41087332367897034},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28017669916152954},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17024552822113037},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11139023303985596}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.8962306380271912},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6027251482009888},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5624619126319885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5466237664222717},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5266014337539673},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49543917179107666},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.472125381231308},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4696114659309387},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.41087332367897034},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28017669916152954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17024552822113037},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11139023303985596},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf019","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39841592","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39841592","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11752618","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11752618","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11752618/pdf/bbaf019.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf019","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2462963976","display_name":null,"funder_award_id":"2021R1A2C2010775","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G5318657654","display_name":null,"funder_award_id":"2022R1A4A1030189","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6276415885","display_name":null,"funder_award_id":"2021R1A2C2010775","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G7327041366","display_name":null,"funder_award_id":"2022R1A4A1030189","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"},{"id":"https://openalex.org/F4320335489","display_name":"Institute for Information and Communications Technology Promotion","ror":"https://ror.org/01g0hqq23"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1566050849","https://openalex.org/W2112750648","https://openalex.org/W2124045889","https://openalex.org/W2172252592","https://openalex.org/W2174849886","https://openalex.org/W2344476582","https://openalex.org/W2412521064","https://openalex.org/W2753633147","https://openalex.org/W2908510526","https://openalex.org/W2912672202","https://openalex.org/W2950777612","https://openalex.org/W2964015378","https://openalex.org/W2983166786","https://openalex.org/W3004781275","https://openalex.org/W3047127239","https://openalex.org/W3092790415","https://openalex.org/W3106811464","https://openalex.org/W3109772457","https://openalex.org/W3118828765","https://openalex.org/W3122449611","https://openalex.org/W3127556601","https://openalex.org/W3155404242","https://openalex.org/W3165133141","https://openalex.org/W3191147530","https://openalex.org/W3199622685","https://openalex.org/W3211778832","https://openalex.org/W4200546702","https://openalex.org/W4205843699","https://openalex.org/W4220672913","https://openalex.org/W4221048327","https://openalex.org/W4221128994","https://openalex.org/W4296640258","https://openalex.org/W4323036511","https://openalex.org/W4361278700","https://openalex.org/W4385245566","https://openalex.org/W4388633007","https://openalex.org/W4396955108","https://openalex.org/W6726873649","https://openalex.org/W6739901393","https://openalex.org/W6755340666","https://openalex.org/W6757817989","https://openalex.org/W6773834824"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W1948107826","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998","https://openalex.org/W2963081352","https://openalex.org/W4376608938","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Identifying":[0],"therapeutic":[1,31,63,101],"genes":[2,33],"is":[3],"crucial":[4],"for":[5],"developing":[6],"treatments":[7],"targeting":[8],"genetic":[9],"causes":[10],"of":[11,41,69,77],"diseases,":[12,80],"but":[13],"experimental":[14],"trials":[15],"are":[16],"costly":[17],"and":[18,81,96],"time-consuming.":[19],"Although":[20],"many":[21],"deep":[22,54],"learning":[23,57,85],"approaches":[24],"aim":[25],"to":[26,37,86,98],"identify":[27,99],"biomarker":[28,65],"genes,":[29,78],"predicting":[30],"target":[32],"remains":[34],"challenging":[35],"due":[36],"the":[38],"limited":[39],"number":[40],"known":[42],"targets.":[43,102],"To":[44],"address":[45],"this,":[46],"we":[47],"propose":[48],"HIT":[49,73],"(Hypergraph":[50],"Interaction":[51],"Transformer),":[52],"a":[53,61],"hypergraph":[55,75],"representation":[56],"model":[58],"that":[59],"identifies":[60],"gene's":[62],"potential,":[64],"status,":[66],"or":[67],"lack":[68],"association":[70],"with":[71],"diseases.":[72],"uses":[74],"structures":[76],"ontologies,":[79],"phenotypes,":[82],"employing":[83],"attention-based":[84],"capture":[87],"complex":[88],"relationships.":[89],"Experiments":[90],"demonstrate":[91],"HIT's":[92],"state-of-the-art":[93],"performance,":[94],"explainability,":[95],"ability":[97],"novel":[100]},"counts_by_year":[],"updated_date":"2026-06-14T07:44:22.658603","created_date":"2025-10-10T00:00:00"}
