{"id":"https://openalex.org/W4406298409","doi":"https://doi.org/10.1093/bib/bbaf004","title":"TRIAGE: an R package for regulatory gene analysis","display_name":"TRIAGE: an R package for regulatory gene analysis","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4406298409","doi":"https://doi.org/10.1093/bib/bbaf004","pmid":"https://pubmed.ncbi.nlm.nih.gov/39800877"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf004","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf004/61416201/bbaf004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf004/61416201/bbaf004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039106985","display_name":"Qiongyi Zhao","orcid":"https://orcid.org/0000-0002-6341-0416"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Qiongyi Zhao","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089744693","display_name":"Woo Jun Shim","orcid":"https://orcid.org/0000-0001-9446-7821"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Woo Jun Shim","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000570545","display_name":"Yuliangzi Sun","orcid":"https://orcid.org/0000-0001-9785-4261"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuliangzi Sun","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036222939","display_name":"Enakshi Sinniah","orcid":"https://orcid.org/0000-0002-3403-3658"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Enakshi Sinniah","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074980786","display_name":"Sophie Shen","orcid":"https://orcid.org/0000-0002-1867-050X"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sophie Shen","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045279138","display_name":"Mikael Bod\u00e9n","orcid":"https://orcid.org/0000-0003-3548-268X"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mikael Boden","raw_affiliation_strings":["School of Chemistry and Molecular Biosciences, The University of Queensland , 68 Cooper Rd, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, The University of Queensland , 68 Cooper Rd, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087836581","display_name":"Nathan J. Palpant","orcid":"https://orcid.org/0000-0002-9334-8107"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nathan J Palpant","raw_affiliation_strings":["Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,"],"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, The University of Queensland , 306 Carmody Road, St Lucia, Brisbane, QLD 4072 ,","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039106985"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.6826,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.71469523,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.717184841632843},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49211663007736206},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4797978699207306},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4662315845489502},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4421626925468445},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.3523736894130707},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27908265590667725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24302786588668823},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.23756608366966248},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20661064982414246},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10250928997993469}],"concepts":[{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.717184841632843},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49211663007736206},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4797978699207306},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4662315845489502},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4421626925468445},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.3523736894130707},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27908265590667725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24302786588668823},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.23756608366966248},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20661064982414246},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10250928997993469}],"mesh":[{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005809","descriptor_name":"Genes, Regulator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf004","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf004/61416201/bbaf004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39800877","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39800877","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11725390","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11725390","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11725390/pdf/bbaf004.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf004","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbaf004/61416201/bbaf004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1010488065","display_name":null,"funder_award_id":"106721","funder_id":"https://openalex.org/F4320320442","funder_display_name":"National Heart Foundation of Australia"}],"funders":[{"id":"https://openalex.org/F4320320442","display_name":"National Heart Foundation of Australia","ror":"https://ror.org/039d9wr27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406298409.pdf","grobid_xml":"https://content.openalex.org/works/W4406298409.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1501760102","https://openalex.org/W1586857541","https://openalex.org/W1969790984","https://openalex.org/W2007758222","https://openalex.org/W2045949302","https://openalex.org/W2076154138","https://openalex.org/W2076513103","https://openalex.org/W2114104545","https://openalex.org/W2123454830","https://openalex.org/W2145825942","https://openalex.org/W2154201149","https://openalex.org/W2156564520","https://openalex.org/W2158948118","https://openalex.org/W2170637386","https://openalex.org/W2177534613","https://openalex.org/W2179438025","https://openalex.org/W2237684570","https://openalex.org/W2537679995","https://openalex.org/W2729948611","https://openalex.org/W2738643992","https://openalex.org/W2770092353","https://openalex.org/W2774307122","https://openalex.org/W2900569176","https://openalex.org/W2901292166","https://openalex.org/W2924745911","https://openalex.org/W2940597536","https://openalex.org/W2949177718","https://openalex.org/W2968999944","https://openalex.org/W3007397831","https://openalex.org/W3049348349","https://openalex.org/W3056694453","https://openalex.org/W3083855890","https://openalex.org/W3110611551","https://openalex.org/W3127556601","https://openalex.org/W3162847608","https://openalex.org/W3175752499","https://openalex.org/W3199635667","https://openalex.org/W4220985590","https://openalex.org/W4280569279","https://openalex.org/W4295750961","https://openalex.org/W4307034884","https://openalex.org/W4312018745","https://openalex.org/W4313568307","https://openalex.org/W4367598485","https://openalex.org/W4384198561","https://openalex.org/W4387129163","https://openalex.org/W4389379124","https://openalex.org/W4389614286","https://openalex.org/W4391775935","https://openalex.org/W4403876550"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4394761728","https://openalex.org/W1975091423","https://openalex.org/W2144451503","https://openalex.org/W2033023095","https://openalex.org/W125325933","https://openalex.org/W2941176721","https://openalex.org/W2051773733","https://openalex.org/W3015660457","https://openalex.org/W2909333182"],"abstract_inverted_index":{"Regulatory":[0],"genes":[1],"are":[2],"critical":[3],"determinants":[4],"of":[5,32,84,107],"cellular":[6],"responses":[7],"in":[8,27,55],"development":[9],"and":[10,35,58,86,93],"disease,":[11],"but":[12],"standard":[13,121],"RNA":[14],"sequencing":[15],"(RNA-seq)":[16],"analysis":[17,92,122],"workflows,":[18],"such":[19],"as":[20],"differential":[21],"expression":[22],"analysis,":[23],"have":[24],"significant":[25],"limitations":[26],"revealing":[28,99],"the":[29,43,82,105,108],"regulatory":[30,53,78,100,126],"basis":[31],"cell":[33],"identity":[34],"function.":[36],"To":[37],"address":[38],"this":[39],"challenge,":[40],"we":[41],"present":[42],"TRIAGE":[44,67,109,133],"R":[45,110,134],"package,":[46],"a":[47,96],"toolkit":[48],"specifically":[49],"designed":[50],"to":[51,74],"analyze":[52],"elements":[54],"both":[56],"bulk":[57],"single-cell":[59],"RNA-seq":[60],"datasets.":[61],"The":[62,132],"package":[63,111,135],"is":[64,136],"built":[65],"upon":[66],"methods,":[68],"which":[69],"leverage":[70],"consortium-level":[71],"H3K27me3":[72],"data":[73,91],"enrich":[75],"for":[76,89,124],"cell-type-specific":[77],"regions.":[79],"It":[80],"facilitates":[81],"construction":[83],"efficient":[85],"adaptable":[87],"pipelines":[88],"transcriptomic":[90,115],"visualization,":[94],"with":[95],"focus":[97],"on":[98,138],"gene":[101],"networks.":[102],"We":[103],"demonstrate":[104],"utility":[106],"using":[112],"three":[113],"independent":[114],"datasets,":[116],"showcasing":[117],"its":[118],"integration":[119],"into":[120],"workflows":[123],"examining":[125],"mechanisms":[127],"across":[128],"diverse":[129],"biological":[130],"contexts.":[131],"available":[137],"GitHub":[139],"at":[140],"https://github.com/palpant-comp/TRIAGE_R_Package.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
